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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZDHHC18 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
37.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZDHHC18 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
69.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
38.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
36.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
35.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
28.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
415
Tumor
1.4
343
Tumor
1.2
554
Normal
1.2
978
Normal
1.1
451
Tumor
1.0
524
Normal
1.0
966
Normal
1.0
434
Normal
1.0
534
Normal
1.0
573
Tumor
0.9
661
Tumor
0.9
528
Normal
0.9
917
Tumor
0.9
916
Normal
0.8
311
Tumor
0.8
362
Normal
0.8
391
Tumor
0.7
914
Normal
0.7
368
Normal
0.7
384
Normal
0.7
538
Normal
0.7
516
Normal
0.7
976
Normal
0.7
383
Tumor
0.7
874
Normal
0.6
387
Tumor
0.6
375
Tumor
0.6
344
Normal
0.6
662
Normal
0.6
395
Tumor
0.6
617
Tumor
0.6
352
Normal
0.6
366
Normal
0.6
328
Normal
0.5
518
Normal
0.5
195
Tumor
0.5
1045
Tumor
0.5
396
Normal
0.5
778
Normal
0.5
1043
Tumor
0.5
713
Tumor
0.5
386
Normal
0.5
217
Tumor
0.5
365
Tumor
0.5
664
Normal
0.5
721
Tumor
0.5
866
Normal
0.4
984
Normal
0.4
672
Normal
0.4
447
Tumor
0.4
666
Normal
0.4
814
Normal
0.4
514
Normal
0.4
616
Normal
0.4
722
Normal
0.4
124
Normal
0.4
536
Normal
0.4
356
Normal
0.4
385
Tumor
0.4
213
Tumor
0.4
392
Normal
0.4
526
Normal
0.4
192
Normal
0.4
884
Normal
0.4
975
Tumor
0.4
937
Tumor
0.4
361
Tumor
0.4
364
Normal
0.4
376
Normal
0.3
367
Tumor
0.3
958
Normal
0.3
188
Normal
0.3
218
Normal
0.3
968
Normal
0.3
444
Normal
0.3
468
Normal
0.3
1046
Normal
0.3
567
Tumor
0.3
963
Tumor
0.3
852
Normal
0.3
354
Normal
0.3
922
Normal
0.3
964
Normal
0.3
262
Normal
0.3
467
Tumor
0.3
816
Normal
0.3
714
Normal
0.3
388
Normal
0.3
943
Tumor
0.3
114
Normal
0.3
641
Tumor
0.3
574
Normal
0.3
535
Tumor
0.3
878
Normal
0.3
851
Tumor
0.3
818
Normal
0.3
862
Normal
0.3
412
Normal
0.3
926
Normal
0.3
648
Normal
0.3
161
Tumor
0.2
628
Normal
0.2
858
Normal
0.2
312
Normal
0.2
636
Normal
0.2
394
Normal
0.2
868
Normal
0.2
824
Normal
0.2
696
Normal
0.2
756
Normal
0.2
185
Tumor
0.2
618
Normal
0.2
332
Normal
0.2
918
Normal
0.2
125
Tumor
0.2
426
Normal
0.2
191
Tumor
0.2
546
Normal
0.2
342
Normal
0.2
111
Normal
0.2
697
Tumor
0.2
1016
Normal
0.2
126
Normal
0.2
882
Normal
0.2
1044
Normal
0.2
424
Normal
0.2
146
Normal
0.2
525
Tumor
0.2
671
Tumor
0.2
698
Normal
0.2
358
Normal
0.2
1031
Tumor
0.2
642
Normal
0.2
113
Tumor
0.2
416
Normal
0.2
686
Normal
0.2
863
Tumor
0.2
1014
Normal
0.2
663
Tumor
0.2
857
Tumor
0.2
272
Normal
0.1
1028
Normal
0.1
881
Tumor
0.1
716
Normal
0.1
268
Normal
0.1
138
Normal
0.1
635
Tumor
0.1
913
Tumor
0.1
298
Normal
0.1
448
Normal
0.1
1042
Normal
0.1
141
Tumor
0.1
432
Normal
0.1
1025
Tumor
0.1
142
Normal
0.1
278
Normal
0.1
446
Normal
0.1
864
Normal
0.1
954
Normal
0.1
912
Normal
0.1
232
Normal
0.1
1026
Normal
0.1
956
Normal
0.1
214
Normal
0.1
136
Normal
0.1
571
Tumor
0.1
951
Tumor
0.1
786
Normal
0.1
421
Tumor
0.0
1022
Normal
0.0
297
Tumor
0.0
258
Normal
0.0
428
Normal
0.0
1032
Normal
0.0
196
Normal
0.0
427
Tumor
0.0
627
Tumor
0.0
955
Tumor
0.0
877
Tumor
0.0
952
Normal
0.0
222
Normal
0.0
145
Tumor
0.0
615
Tumor
0.0
924
Normal
0.0
187
Tumor
0.0
1015
Tumor
0.0
817
Tumor
0.0
865
Tumor
-0.1
938
Normal
-0.1
925
Tumor
-0.1
466
Normal
-0.1
413
Tumor
-0.1
563
Tumor
-0.1
393
Tumor
-0.1
456
Normal
-0.1
665
Tumor
-0.1
746
Normal
-0.1
422
Normal
-0.1
423
Tumor
-0.1
353
Tumor
-0.1
558
Normal
-0.1
823
Tumor
-0.1
172
Normal
-0.1
944
Normal
-0.1
883
Tumor
-0.1
463
Tumor
-0.1
221
Tumor
-0.1
568
Normal
-0.1
132
Normal
-0.1
564
Normal
-0.1
341
Tumor
-0.1
162
Normal
-0.2
861
Tumor
-0.2
128
Normal
-0.2
148
Normal
-0.2
873
Tumor
-0.2
685
Tumor
-0.2
572
Normal
-0.2
452
Normal
-0.2
965
Tumor
-0.2
186
Normal
-0.2
983
Tumor
-0.2
557
Tumor
-0.2
915
Tumor
-0.2
695
Tumor
-0.2
815
Tumor
-0.3
363
Tumor
-0.3
953
Tumor
-0.3
982
Normal
-0.3
351
Tumor
-0.3
464
Normal
-0.3
414
Normal
-0.3
271
Tumor
-0.3
867
Tumor
-0.3
1021
Tumor
-0.3
147
Tumor
-0.3
755
Tumor
-0.3
314
Normal
-0.3
331
Tumor
-0.3
1027
Tumor
-0.3
443
Tumor
-0.4
785
Tumor
-0.4
813
Tumor
-0.4
425
Tumor
-0.4
231
Tumor
-0.4
977
Tumor
-0.4
647
Tumor
-0.4
327
Tumor
-0.4
436
Normal
-0.4
112
Tumor
-0.4
715
Tumor
-0.4
921
Tumor
-0.4
135
Tumor
-0.5
137
Tumor
-0.5
355
Tumor
-0.5
545
Tumor
-0.5
257
Tumor
-0.5
967
Tumor
-0.5
277
Tumor
-0.5
465
Tumor
-0.5
433
Tumor
-0.5
261
Tumor
-0.5
445
Tumor
-0.5
267
Tumor
-0.5
553
Tumor
-0.6
127
Tumor
-0.6
957
Tumor
-0.6
455
Tumor
-0.6
911
Tumor
-0.6
171
Tumor
-0.7
123
Tumor
-0.7
981
Tumor
-0.7
923
Tumor
-0.7
777
Tumor
-0.7
515
Tumor
-0.8
1041
Tumor
-0.8
431
Tumor
-0.8
745
Tumor
-0.8
537
Tumor
-0.9
131
Tumor
-0.9
411
Tumor
-0.9
435
Tumor
-1.0
313
Tumor
-1.0
357
Tumor
-1.0
523
Tumor
-1.1
517
Tumor
-1.1
513
Tumor
-1.1
1013
Tumor
-1.2
533
Tumor
-1.3
527
Tumor
-1.3
471
Tumor
N/A
472
Normal
N/A
473
Tumor
N/A
474
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
211
Tumor
N/A
212
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
223
Tumor
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
