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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.3
Number of samples
231
Samples
Sample
Description
TPM
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.3
217
Tumor
1.2
477
Tumor
1.2
574
Normal
1.1
222
Normal
1.1
383
Tumor
1.1
568
Normal
1.1
617
Tumor
1.0
877
Tumor
0.9
727
Tumor
0.9
214
Normal
0.8
283
Tumor
0.7
444
Normal
0.7
221
Tumor
0.7
191
Tumor
0.7
384
Normal
0.7
816
Normal
0.7
873
Tumor
0.6
368
Normal
0.6
884
Normal
0.6
341
Tumor
0.6
823
Tumor
0.6
641
Tumor
0.6
353
Tumor
0.6
713
Tumor
0.6
328
Normal
0.6
196
Normal
0.6
213
Tumor
0.5
863
Tumor
0.5
1021
Tumor
0.5
471
Tumor
0.5
513
Tumor
0.5
627
Tumor
0.5
1031
Tumor
0.5
361
Tumor
0.5
363
Tumor
0.5
851
Tumor
0.5
1025
Tumor
0.5
171
Tumor
0.5
344
Normal
0.5
433
Tumor
0.5
553
Tumor
0.5
452
Normal
0.5
665
Tumor
0.5
976
Normal
0.5
742
Normal
0.5
343
Tumor
0.4
434
Normal
0.4
881
Tumor
0.4
912
Normal
0.4
865
Tumor
0.4
867
Tumor
0.4
357
Tumor
0.4
866
Normal
0.4
358
Normal
0.4
526
Normal
0.3
1032
Normal
0.3
187
Tumor
0.3
883
Tumor
0.3
366
Normal
0.3
362
Normal
0.3
493
Tumor
0.3
472
Normal
0.3
365
Tumor
0.3
778
Normal
0.3
982
Normal
0.3
983
Tumor
0.3
572
Normal
0.3
858
Normal
0.3
563
Tumor
0.3
721
Tumor
0.3
483
Tumor
0.3
478
Normal
0.3
396
Normal
0.3
218
Normal
0.3
488
Normal
0.3
1041
Tumor
0.3
537
Tumor
0.3
864
Normal
0.3
355
Tumor
0.3
862
Normal
0.3
671
Tumor
0.3
818
Normal
0.3
185
Tumor
0.3
352
Normal
0.3
697
Tumor
0.3
981
Tumor
0.3
672
Normal
0.3
464
Normal
0.2
1026
Normal
0.2
861
Tumor
0.2
395
Tumor
0.2
958
Normal
0.2
744
Normal
0.2
394
Normal
0.2
824
Normal
0.2
188
Normal
0.2
386
Normal
0.2
492
Normal
0.2
388
Normal
0.2
868
Normal
0.2
467
Tumor
0.2
431
Tumor
0.2
648
Normal
0.2
538
Normal
0.2
636
Normal
0.2
376
Normal
0.2
455
Tumor
0.2
554
Normal
0.2
327
Tumor
0.2
1016
Normal
0.2
518
Normal
0.2
1022
Normal
0.2
392
Normal
0.2
874
Normal
0.2
186
Normal
0.2
1028
Normal
0.2
443
Tumor
0.2
817
Tumor
0.2
878
Normal
0.2
723
Tumor
0.2
162
Normal
0.2
738
Normal
0.2
984
Normal
0.2
951
Tumor
0.2
172
Normal
0.2
662
Normal
0.2
461
Tumor
0.2
975
Tumor
0.2
415
Tumor
0.2
387
Tumor
0.1
498
Normal
0.1
354
Normal
0.1
814
Normal
0.1
642
Normal
0.1
741
Tumor
0.1
545
Tumor
0.1
664
Normal
0.1
786
Normal
0.1
342
Normal
0.1
161
Tumor
0.1
813
Tumor
0.1
484
Normal
0.1
351
Tumor
0.1
391
Tumor
0.1
137
Tumor
0.1
852
Normal
0.1
224
Normal
0.1
911
Tumor
0.1
857
Tumor
0.1
528
Normal
0.1
516
Normal
0.1
223
Tumor
0.1
482
Normal
0.1
635
Tumor
0.1
364
Normal
0.1
463
Tumor
0.1
494
Normal
0.1
432
Normal
0.1
965
Tumor
0.1
456
Normal
0.1
298
Normal
0.1
666
Normal
0.1
1014
Normal
0.1
978
Normal
0.1
696
Normal
0.1
332
Normal
0.1
1046
Normal
0.1
446
Normal
0.1
534
Normal
0.1
558
Normal
0.1
466
Normal
0.1
628
Normal
0.1
146
Normal
0.1
227
Tumor
0.1
882
Normal
0.1
141
Tumor
0.1
468
Normal
0.1
425
Tumor
0.1
743
Tumor
0.1
963
Tumor
0.0
1042
Normal
0.0
686
Normal
0.0
1045
Tumor
0.0
525
Tumor
0.0
785
Tumor
0.0
148
Normal
0.0
546
Normal
0.0
473
Tumor
0.0
968
Normal
0.0
278
Normal
0.0
937
Tumor
0.0
724
Normal
0.0
615
Tumor
0.0
132
Normal
0.0
491
Tumor
0.0
746
Normal
0.0
136
Normal
0.0
715
Tumor
0.0
954
Normal
0.0
311
Tumor
0.0
533
Tumor
0.0
964
Normal
0.0
571
Tumor
0.0
447
Tumor
0.0
618
Normal
0.0
436
Normal
0.0
977
Tumor
0.0
616
Normal
0.0
716
Normal
0.0
913
Tumor
0.0
914
Normal
-0.1
412
Normal
-0.1
944
Normal
-0.1
356
Normal
-0.1
435
Tumor
-0.1
698
Normal
-0.1
212
Normal
-0.1
367
Tumor
-0.1
777
Tumor
-0.1
523
Tumor
-0.1
474
Normal
-0.1
756
Normal
-0.1
938
Normal
-0.1
515
Tumor
-0.1
314
Normal
-0.1
385
Tumor
-0.1
514
Normal
-0.1
481
Tumor
-0.1
1015
Tumor
-0.1
451
Tumor
-0.1
195
Tumor
-0.1
535
Tumor
-0.1
413
Tumor
-0.2
524
Normal
-0.2
147
Tumor
-0.2
312
Normal
-0.2
462
Normal
-0.2
445
Tumor
-0.2
755
Tumor
-0.2
943
Tumor
-0.2
426
Normal
-0.2
536
Normal
-0.2
1044
Normal
-0.2
647
Tumor
-0.2
745
Tumor
-0.2
685
Tumor
-0.2
497
Tumor
-0.2
1027
Tumor
-0.2
138
Normal
-0.2
393
Tumor
-0.2
284
Normal
-0.2
142
Normal
-0.2
1013
Tumor
-0.2
728
Normal
-0.2
815
Tumor
-0.2
737
Tumor
-0.2
416
Normal
-0.2
423
Tumor
-0.2
465
Tumor
-0.3
427
Tumor
-0.3
1043
Tumor
-0.3
966
Normal
-0.3
953
Tumor
-0.3
714
Normal
-0.3
277
Tumor
-0.3
695
Tumor
-0.3
722
Normal
-0.3
145
Tumor
-0.3
448
Normal
-0.3
421
Tumor
-0.3
487
Tumor
-0.3
375
Tumor
-0.3
955
Tumor
-0.3
424
Normal
-0.3
422
Normal
-0.3
228
Normal
-0.3
428
Normal
-0.3
567
Tumor
-0.3
952
Normal
-0.4
957
Tumor
-0.4
564
Normal
-0.4
192
Normal
-0.4
414
Normal
-0.4
286
Normal
-0.4
517
Tumor
-0.4
135
Tumor
-0.4
297
Tumor
-0.5
956
Normal
-0.5
663
Tumor
-0.5
411
Tumor
-0.5
331
Tumor
-0.5
661
Tumor
-0.5
967
Tumor
-0.5
557
Tumor
-0.6
573
Tumor
-0.6
527
Tumor
-0.7
313
Tumor
-0.8
131
Tumor
-1.0
285
Tumor
-1.1
231
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
