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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
20.4
nTPM
HPA Brain:
39.8
nTPM
GTEx:
20.4
nTPM
FANTOM5:
1.1
Scaled Tags Per Million
Pig:
0.7
nTPM
Mouse:
0.7
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
39.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 27.3
2828
Female, age 72, unknown
48.4
2219
Male, age 76, both hemispheres
44.5
2586
Male, age 75, left hemisphere
36.5
1827
Male, age 72, unknown
25.1
2019
Male, age 18, unknown
24.9
2666
Male, age 74, left hemisphere
23.2
1870
Female, age 42, unknown
22.1
1830
Male, age 51, unknown
17.4
2411
Female, age 72, unknown
15.6
1833
Male, age 53, unknown
14.9
Dorsal raphe nucleus nTPM: 21.2
2047
Male, age 72, unknown
27.9
2750
Male, age 76, both hemispheres
27.2
2298
Female, age 72, unknown
19.4
1828
Male, age 53, unknown
17.5
2016
Female, age 72, unknown
14.2
Inferior colliculus nTPM: 23.9
2097
Female, age 72, unknown
26.9
1890
Male, age 53, unknown
26.7
2849
Male, age 72, unknown
22.0
1848
Female, age 42, unknown
20.0
Median raphe nucleus nTPM: 27.9
2220
Male, age 76, midline
27.9
Periaquaductal grey, anterior nTPM: 39.8
1795
Male, age 51, unknown
59.1
2502
Female, age 75, unknown
40.0
1947
Male, age 18, unknown
20.4
Periaquaductal grey, dorsal nTPM: 17.1
2464
Female, age 72, unknown
20.5
1831
Male, age 72, unknown
18.9
2850
Male, age 76, both hemispheres
18.1
1840
Male, age 53, unknown
10.9
Periaquaductal grey, lateral nTPM: 24.3
2140
Male, age 76, both hemispheres
28.1
2272
Male, age 74, both hemispheres
23.4
2053
Male, age 18, unknown
21.5
Pretectal area nTPM: 33.2
1944
Female, age 72, unknown
56.9
2007
Male, age 72, unknown
45.9
1816
Male, age 51, unknown
43.6
1817
Female, age 42, unknown
35.8
1815
Male, age 53, unknown
33.9
2667
Female, age 75, unknown
32.7
2316
Male, age 76, right hemisphere
30.4
2224
Female, age 72, unknown
29.6
2273
Male, age 74, both hemispheres
22.8
2825
Male, age 18, unknown
18.1
2407
Male, age 75, both hemispheres
15.8
Red nucleus nTPM: 16.3
2785
Male, age 18, unknown
35.5
2588
Male, age 74, left hemisphere
21.3
2584
Male, age 75, left hemisphere
21.2
2227
Male, age 72, unknown
19.5
2503
Female, age 72, unknown
17.1
1904
Male, age 53, unknown
16.2
2769
Male, age 72, unknown
15.6
1954
Female, age 42, unknown
14.1
2725
Female, age 75, unknown
11.5
1865
Male, age 51, unknown
10.4
2823
Male, age 76, right hemisphere
8.1
1821
Female, age 72, unknown
5.3
Substantia nigra nTPM: 19.4
1889
Female, age 72, unknown
29.5
1916
Female, age 42, unknown
28.6
2665
Male, age 74, both hemispheres
26.2
1941
Male, age 53, unknown
26.0
2590
Female, age 75, unknown
19.0
1851
Male, age 51, unknown
15.5
2583
Male, age 75, right hemisphere
15.4
2699
Male, age 18, unknown
14.0
2409
Female, age 72, unknown
13.0
2241
Male, age 72, unknown
6.6
Superior colliculus nTPM: 27.3
2261
Male, age 18, unknown
47.8
1796
Male, age 53, unknown
41.3
1913
Female, age 42, unknown
29.7
2668
Female, age 75, unknown
26.7
2087
Female, age 72, unknown
26.4
2664
Male, age 75, both hemispheres
25.7
1995
Male, age 72, unknown
22.7
1839
Male, age 51, unknown
20.5
2587
Male, age 74, left hemisphere
19.5
1895
Male, age 76, right hemisphere
12.5
Ventral tegmental area nTPM: 22.0
1942
Male, age 51, unknown
27.5
1915
Female, age 42, unknown
25.3
2218
Male, age 76, both hemispheres
24.1
2021
Male, age 53, unknown
20.7
2223
Female, age 72, unknown
18.3
2410
Female, age 72, unknown
16.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 20.4
Samples: 139
Max nTPM: 55.8
Min nTPM: 1.7
Std nTPM: 9.8
Median nTPM: 20.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
55.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
45.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
43.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
41.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
39.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
39.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
39.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
37.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
36.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
35.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
34.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
34.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
34.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
33.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
33.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
33.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
33.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
32.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
31.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
31.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
31.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
30.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
30.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
29.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
29.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
29.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
28.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
28.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
28.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
28.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
28.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
28.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
28.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
27.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
27.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
27.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
26.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
26.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
25.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
25.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
25.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
24.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
24.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
24.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
24.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
24.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
24.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
23.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
23.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
23.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
23.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
22.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
22.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
22.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
22.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
22.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
22.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
22.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
21.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
21.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
21.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
21.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
20.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
20.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
20.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
20.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
20.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
20.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
20.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
20.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
19.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
18.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
18.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
18.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
18.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
17.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
17.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
17.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
17.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
17.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
17.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
17.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
17.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
16.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
16.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
16.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
16.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
16.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
16.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
16.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
15.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
15.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
15.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
14.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
14.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
14.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
14.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
14.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
14.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
14.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
13.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
13.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
13.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
13.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
12.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
12.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
12.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
12.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
12.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
11.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
11.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
11.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
11.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
11.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
11.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
10.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
10.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
10.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
10.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
9.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
9.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
9.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
8.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
8.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
7.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
7.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
7.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
7.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
7.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
7.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
6.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
6.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
5.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
5.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
5.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
4.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
4.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
2.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 0.7
Samples: 4
Max nTPM: 1.0
Min nTPM: 0.4
Sample A
Male
1.0
Sample B
Male
0.5
Sample C
Female
0.9
Sample D
Female
0.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.