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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
94592.2
nTPM
HPA Brain:
52429.3
nTPM
GTEx:
94592.2
nTPM
Pig:
49449.4
nTPM
Mouse:
28656.2
nTPM
Allen mouse:
23.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52429.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 38449.2
2586
Male, age 75, left hemisphere
70897.3
2666
Male, age 74, left hemisphere
52989.7
2219
Male, age 76, both hemispheres
48541.6
2828
Female, age 72, unknown
45635.6
1870
Female, age 42, unknown
34199.3
1833
Male, age 53, unknown
33094.5
1830
Male, age 51, unknown
28323.1
1827
Male, age 72, unknown
27677.0
2019
Male, age 18, unknown
26833.1
2411
Female, age 72, unknown
16301.0
Dorsal raphe nucleus nTPM: 25132.0
1828
Male, age 53, unknown
34053.7
2047
Male, age 72, unknown
29663.3
2750
Male, age 76, both hemispheres
25887.7
2016
Female, age 72, unknown
23029.6
2298
Female, age 72, unknown
13025.6
Inferior colliculus nTPM: 28514.0
2849
Male, age 72, unknown
39604.1
1890
Male, age 53, unknown
31370.3
1848
Female, age 42, unknown
26702.8
2097
Female, age 72, unknown
16379.0
Median raphe nucleus nTPM: 52429.3
2220
Male, age 76, midline
52429.3
Periaquaductal grey, anterior nTPM: 25064.9
2502
Female, age 75, unknown
29993.8
1795
Male, age 51, unknown
24418.5
1947
Male, age 18, unknown
20782.5
Periaquaductal grey, dorsal nTPM: 30022.6
2850
Male, age 76, both hemispheres
45696.3
1831
Male, age 72, unknown
27149.8
1840
Male, age 53, unknown
24799.0
2464
Female, age 72, unknown
22445.3
Periaquaductal grey, lateral nTPM: 19254.9
2140
Male, age 76, both hemispheres
22957.6
2053
Male, age 18, unknown
22017.2
2272
Male, age 74, both hemispheres
12789.9
Pretectal area nTPM: 34067.1
2667
Female, age 75, unknown
51599.2
1816
Male, age 51, unknown
49568.5
1817
Female, age 42, unknown
48557.2
1944
Female, age 72, unknown
48184.6
2007
Male, age 72, unknown
41708.2
1815
Male, age 53, unknown
40146.6
2825
Male, age 18, unknown
27970.0
2407
Male, age 75, both hemispheres
22862.0
2224
Female, age 72, unknown
18321.7
2316
Male, age 76, right hemisphere
15087.4
2273
Male, age 74, both hemispheres
10732.7
Red nucleus nTPM: 31436.5
2584
Male, age 75, left hemisphere
48012.0
2588
Male, age 74, left hemisphere
39030.7
2503
Female, age 72, unknown
34896.4
2785
Male, age 18, unknown
34602.8
1954
Female, age 42, unknown
32384.5
1865
Male, age 51, unknown
31012.6
2823
Male, age 76, right hemisphere
28400.6
2227
Male, age 72, unknown
26654.7
1904
Male, age 53, unknown
26643.3
1821
Female, age 72, unknown
26506.1
2769
Male, age 72, unknown
26483.6
2725
Female, age 75, unknown
22610.7
Substantia nigra nTPM: 41731.9
2665
Male, age 74, both hemispheres
81441.9
1916
Female, age 42, unknown
56865.1
2699
Male, age 18, unknown
56714.4
1941
Male, age 53, unknown
37705.9
1889
Female, age 72, unknown
37636.6
2241
Male, age 72, unknown
36110.6
2583
Male, age 75, right hemisphere
35214.4
1851
Male, age 51, unknown
31440.7
2590
Female, age 75, unknown
25405.0
2409
Female, age 72, unknown
18784.8
Superior colliculus nTPM: 31678.0
2664
Male, age 75, both hemispheres
58938.7
2087
Female, age 72, unknown
39944.1
2587
Male, age 74, left hemisphere
33817.1
2668
Female, age 75, unknown
30326.3
1913
Female, age 42, unknown
28461.1
2261
Male, age 18, unknown
26497.3
1839
Male, age 51, unknown
25759.8
1796
Male, age 53, unknown
25403.0
1895
Male, age 76, right hemisphere
23863.3
1995
Male, age 72, unknown
23769.6
Ventral tegmental area nTPM: 32213.1
2218
Male, age 76, both hemispheres
49272.0
1942
Male, age 51, unknown
34340.6
2223
Female, age 72, unknown
33009.6
1915
Female, age 42, unknown
32985.5
2021
Male, age 53, unknown
24876.2
2410
Female, age 72, unknown
18794.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
94592.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 94592.2
Samples: 139
Max nTPM: 349232.0
Min nTPM: 6471.1
Std nTPM: 64609.3
Median nTPM: 72246.7
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28656.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 28656.3
Samples: 4
Max nTPM: 29173.3
Min nTPM: 28246.0
Sample A
Male
29173.3
Sample B
Male
28246.0
Sample C
Female
28673.9
Sample D
Female
28531.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
