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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATG9A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
63.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
60.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
59.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
49.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
46.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
43.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
42.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
41.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
40.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
40.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
39.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
39.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
36.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
34.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
34.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
34.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
34.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
33.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
32.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
32.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
32.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
28.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
28.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
27.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
25.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
24.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
23.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
23.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
22.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
19.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
19.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATG9A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.6
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
38.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
30.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
30.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
28.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.8
567
Tumor
1.5
331
Tumor
1.3
573
Tumor
1.2
351
Tumor
1.2
517
Tumor
1.2
131
Tumor
1.1
635
Tumor
1.1
147
Tumor
1.1
951
Tumor
1.1
367
Tumor
1.1
967
Tumor
1.0
171
Tumor
1.0
455
Tumor
0.9
297
Tumor
0.9
1021
Tumor
0.9
925
Tumor
0.9
1013
Tumor
0.8
445
Tumor
0.8
425
Tumor
0.8
983
Tumor
0.8
463
Tumor
0.8
977
Tumor
0.7
745
Tumor
0.7
525
Tumor
0.7
285
Tumor
0.7
923
Tumor
0.6
1031
Tumor
0.6
477
Tumor
0.6
387
Tumor
0.6
447
Tumor
0.6
533
Tumor
0.6
863
Tumor
0.5
1025
Tumor
0.5
375
Tumor
0.5
433
Tumor
0.5
277
Tumor
0.5
527
Tumor
0.4
357
Tumor
0.4
963
Tumor
0.4
671
Tumor
0.4
813
Tumor
0.4
123
Tumor
0.4
471
Tumor
0.4
343
Tumor
0.4
435
Tumor
0.4
537
Tumor
0.4
571
Tumor
0.4
465
Tumor
0.4
965
Tumor
0.4
127
Tumor
0.4
1027
Tumor
0.4
227
Tumor
0.3
313
Tumor
0.3
365
Tumor
0.3
431
Tumor
0.3
815
Tumor
0.3
427
Tumor
0.3
883
Tumor
0.3
271
Tumor
0.3
137
Tumor
0.3
443
Tumor
0.3
257
Tumor
0.3
221
Tumor
0.3
535
Tumor
0.3
391
Tumor
0.3
737
Tumor
0.2
125
Tumor
0.2
213
Tumor
0.2
515
Tumor
0.2
361
Tumor
0.2
217
Tumor
0.2
641
Tumor
0.2
627
Tumor
0.2
363
Tumor
0.2
473
Tumor
0.2
785
Tumor
0.2
975
Tumor
0.2
724
Normal
0.2
383
Tumor
0.1
953
Tumor
0.1
283
Tumor
0.1
311
Tumor
0.1
395
Tumor
0.1
421
Tumor
0.1
661
Tumor
0.1
523
Tumor
0.1
741
Tumor
0.1
545
Tumor
0.1
877
Tumor
0.1
413
Tumor
0.1
553
Tumor
0.1
817
Tumor
0.1
921
Tumor
0.1
135
Tumor
0.1
615
Tumor
0.0
483
Tumor
0.0
881
Tumor
0.0
568
Normal
0.0
491
Tumor
0.0
355
Tumor
0.0
917
Tumor
0.0
713
Tumor
0.0
563
Tumor
0.0
697
Tumor
0.0
385
Tumor
0.0
1043
Tumor
0.0
327
Tumor
0.0
231
Tumor
0.0
665
Tumor
-0.1
497
Tumor
-0.1
618
Normal
-0.1
446
Normal
-0.1
786
Normal
-0.1
564
Normal
-0.1
727
Tumor
-0.1
436
Normal
-0.1
574
Normal
-0.1
915
Tumor
-0.1
572
Normal
-0.1
777
Tumor
-0.1
818
Normal
-0.1
1014
Normal
-0.1
1016
Normal
-0.1
642
Normal
-0.1
861
Tumor
-0.1
145
Tumor
-0.1
981
Tumor
-0.1
744
Normal
-0.1
824
Normal
-0.1
964
Normal
-0.1
1041
Tumor
-0.2
746
Normal
-0.2
461
Tumor
-0.2
187
Tumor
-0.2
432
Normal
-0.2
647
Tumor
-0.2
823
Tumor
-0.2
984
Normal
-0.2
298
Normal
-0.2
636
Normal
-0.2
867
Tumor
-0.2
976
Normal
-0.2
982
Normal
-0.2
756
Normal
-0.2
1045
Tumor
-0.2
341
Tumor
-0.2
328
Normal
-0.2
462
Normal
-0.2
444
Normal
-0.2
968
Normal
-0.2
191
Tumor
-0.2
954
Normal
-0.2
723
Tumor
-0.2
617
Tumor
-0.2
858
Normal
-0.2
142
Normal
-0.2
212
Normal
-0.2
616
Normal
-0.2
423
Tumor
-0.2
755
Tumor
-0.2
558
Normal
-0.2
284
Normal
-0.2
332
Normal
-0.2
957
Tumor
-0.2
1028
Normal
-0.2
778
Normal
-0.2
314
Normal
-0.2
816
Normal
-0.3
312
Normal
-0.3
498
Normal
-0.3
466
Normal
-0.3
228
Normal
-0.3
958
Normal
-0.3
222
Normal
-0.3
342
Normal
-0.3
742
Normal
-0.3
224
Normal
-0.3
672
Normal
-0.3
396
Normal
-0.3
852
Normal
-0.3
132
Normal
-0.3
938
Normal
-0.3
536
Normal
-0.3
493
Tumor
-0.3
721
Tumor
-0.3
698
Normal
-0.3
195
Tumor
-0.3
452
Normal
-0.3
1046
Normal
-0.3
864
Normal
-0.3
528
Normal
-0.3
526
Normal
-0.3
662
Normal
-0.3
882
Normal
-0.3
943
Tumor
-0.3
944
Normal
-0.3
211
Tumor
-0.3
353
Tumor
-0.3
141
Tumor
-0.3
426
Normal
-0.3
663
Tumor
-0.3
918
Normal
-0.3
628
Normal
-0.3
814
Normal
-0.3
484
Normal
-0.3
978
Normal
-0.3
356
Normal
-0.3
392
Normal
-0.3
966
Normal
-0.3
451
Tumor
-0.3
136
Normal
-0.3
464
Normal
-0.3
448
Normal
-0.3
912
Normal
-0.3
286
Normal
-0.3
124
Normal
-0.3
482
Normal
-0.3
113
Tumor
-0.3
666
Normal
-0.3
722
Normal
-0.3
478
Normal
-0.3
546
Normal
-0.3
1032
Normal
-0.3
112
Tumor
-0.3
472
Normal
-0.3
456
Normal
-0.3
664
Normal
-0.3
868
Normal
-0.4
481
Tumor
-0.4
728
Normal
-0.4
857
Tumor
-0.4
185
Tumor
-0.4
926
Normal
-0.4
534
Normal
-0.4
411
Tumor
-0.4
952
Normal
-0.4
368
Normal
-0.4
474
Normal
-0.4
422
Normal
-0.4
924
Normal
-0.4
862
Normal
-0.4
1022
Normal
-0.4
922
Normal
-0.4
434
Normal
-0.4
393
Tumor
-0.4
1015
Tumor
-0.4
428
Normal
-0.4
874
Normal
-0.4
468
Normal
-0.4
494
Normal
-0.4
1042
Normal
-0.4
352
Normal
-0.4
278
Normal
-0.4
415
Tumor
-0.4
394
Normal
-0.4
487
Tumor
-0.4
866
Normal
-0.4
1026
Normal
-0.4
196
Normal
-0.4
388
Normal
-0.4
192
Normal
-0.4
412
Normal
-0.4
223
Tumor
-0.4
384
Normal
-0.4
557
Tumor
-0.4
685
Tumor
-0.4
648
Normal
-0.4
878
Normal
-0.4
261
Tumor
-0.4
738
Normal
-0.4
884
Normal
-0.4
916
Normal
-0.4
126
Normal
-0.4
138
Normal
-0.4
714
Normal
-0.4
111
Normal
-0.4
1044
Normal
-0.4
695
Tumor
-0.4
488
Normal
-0.4
416
Normal
-0.4
686
Normal
-0.4
414
Normal
-0.4
114
Normal
-0.4
232
Normal
-0.5
424
Normal
-0.5
851
Tumor
-0.5
214
Normal
-0.5
344
Normal
-0.5
386
Normal
-0.5
513
Tumor
-0.5
538
Normal
-0.5
376
Normal
-0.5
518
Normal
-0.5
354
Normal
-0.5
516
Normal
-0.5
218
Normal
-0.5
364
Normal
-0.5
128
Normal
-0.5
873
Tumor
-0.5
162
Normal
-0.5
492
Normal
-0.5
146
Normal
-0.5
358
Normal
-0.5
554
Normal
-0.5
188
Normal
-0.5
148
Normal
-0.5
514
Normal
-0.5
913
Tumor
-0.5
524
Normal
-0.5
715
Tumor
-0.5
956
Normal
-0.5
161
Tumor
-0.5
172
Normal
-0.5
267
Tumor
-0.5
911
Tumor
-0.6
914
Normal
-0.6
362
Normal
-0.6
865
Tumor
-0.6
716
Normal
-0.6
366
Normal
-0.6
467
Tumor
-0.6
696
Normal
-0.7
186
Normal
-0.7
955
Tumor
-0.7
937
Tumor
-0.7
268
Normal
-0.7
262
Normal
-0.7
258
Normal
-0.8
272
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.