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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSEN15 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
45.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
43.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
36.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
35.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
32.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
28.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
28.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
27.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
26.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
25.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
25.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
23.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
19.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
18.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
13.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSEN15 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
44.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
37.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
35.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
24.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
171
Tumor
0.8
563
Tumor
0.8
1013
Tumor
0.7
123
Tumor
0.7
185
Tumor
0.7
724
Normal
0.7
186
Normal
0.7
351
Tumor
0.7
172
Normal
0.7
433
Tumor
0.7
283
Tumor
0.7
497
Tumor
0.6
127
Tumor
0.6
375
Tumor
0.6
877
Tumor
0.6
222
Normal
0.6
196
Normal
0.6
161
Tumor
0.6
191
Tumor
0.6
391
Tumor
0.6
147
Tumor
0.6
217
Tumor
0.6
745
Tumor
0.6
387
Tumor
0.6
218
Normal
0.6
533
Tumor
0.5
965
Tumor
0.5
573
Tumor
0.5
951
Tumor
0.5
635
Tumor
0.5
545
Tumor
0.5
567
Tumor
0.5
162
Normal
0.4
192
Normal
0.4
124
Normal
0.4
977
Tumor
0.4
443
Tumor
0.4
983
Tumor
0.4
777
Tumor
0.4
214
Normal
0.4
917
Tumor
0.4
1015
Tumor
0.4
148
Normal
0.4
367
Tumor
0.4
415
Tumor
0.4
368
Normal
0.4
213
Tumor
0.4
188
Normal
0.4
221
Tumor
0.4
525
Tumor
0.3
195
Tumor
0.3
741
Tumor
0.3
393
Tumor
0.3
944
Normal
0.3
873
Tumor
0.3
517
Tumor
0.3
665
Tumor
0.3
814
Normal
0.3
388
Normal
0.3
938
Normal
0.3
647
Tumor
0.3
954
Normal
0.3
366
Normal
0.3
355
Tumor
0.3
211
Tumor
0.3
957
Tumor
0.3
434
Normal
0.2
376
Normal
0.2
865
Tumor
0.2
444
Normal
0.2
297
Tumor
0.2
881
Tumor
0.2
564
Normal
0.2
666
Normal
0.2
671
Tumor
0.2
813
Tumor
0.2
746
Normal
0.2
574
Normal
0.2
341
Tumor
0.2
357
Tumor
0.2
187
Tumor
0.2
916
Normal
0.2
672
Normal
0.2
918
Normal
0.2
943
Tumor
0.2
911
Tumor
0.2
863
Tumor
0.2
537
Tumor
0.2
515
Tumor
0.2
964
Normal
0.2
737
Tumor
0.2
311
Tumor
0.2
331
Tumor
0.2
514
Normal
0.1
362
Normal
0.1
513
Tumor
0.1
361
Tumor
0.1
395
Tumor
0.1
723
Tumor
0.1
412
Normal
0.1
648
Normal
0.1
958
Normal
0.1
663
Tumor
0.1
128
Normal
0.1
664
Normal
0.1
921
Tumor
0.1
363
Tumor
0.1
662
Normal
0.1
111
Normal
0.1
365
Tumor
0.1
313
Tumor
0.1
396
Normal
0.1
524
Normal
0.1
112
Tumor
0.1
526
Normal
0.1
481
Tumor
0.1
953
Tumor
0.1
636
Normal
0.1
298
Normal
0.0
527
Tumor
0.0
411
Tumor
0.0
314
Normal
0.0
224
Normal
0.0
742
Normal
0.0
394
Normal
0.0
874
Normal
0.0
483
Tumor
0.0
278
Normal
0.0
416
Normal
0.0
967
Tumor
0.0
617
Tumor
0.0
445
Tumor
0.0
114
Normal
0.0
926
Normal
0.0
113
Tumor
0.0
755
Tumor
0.0
728
Normal
0.0
327
Tumor
0.0
978
Normal
0.0
756
Normal
0.0
976
Normal
0.0
546
Normal
0.0
228
Normal
0.0
883
Tumor
0.0
126
Normal
0.0
952
Normal
0.0
516
Normal
-0.1
493
Tumor
-0.1
955
Tumor
-0.1
482
Normal
-0.1
956
Normal
-0.1
125
Tumor
-0.1
981
Tumor
-0.1
963
Tumor
-0.1
743
Tumor
-0.1
568
Normal
-0.1
968
Normal
-0.1
285
Tumor
-0.1
915
Tumor
-0.1
966
Normal
-0.1
744
Normal
-0.1
312
Normal
-0.1
924
Normal
-0.1
922
Normal
-0.1
477
Tumor
-0.1
277
Tumor
-0.1
461
Tumor
-0.2
642
Normal
-0.2
727
Tumor
-0.2
227
Tumor
-0.2
332
Normal
-0.2
462
Normal
-0.2
864
Normal
-0.2
284
Normal
-0.2
975
Tumor
-0.2
912
Normal
-0.2
286
Normal
-0.2
328
Normal
-0.2
534
Normal
-0.2
982
Normal
-0.2
518
Normal
-0.2
618
Normal
-0.2
553
Tumor
-0.2
1014
Normal
-0.2
446
Normal
-0.2
923
Tumor
-0.2
778
Normal
-0.2
392
Normal
-0.2
431
Tumor
-0.2
498
Normal
-0.2
937
Tumor
-0.3
661
Tumor
-0.3
785
Tumor
-0.3
523
Tumor
-0.3
432
Normal
-0.3
383
Tumor
-0.3
554
Normal
-0.3
212
Normal
-0.3
1016
Normal
-0.3
472
Normal
-0.3
884
Normal
-0.3
786
Normal
-0.3
353
Tumor
-0.3
528
Normal
-0.3
343
Tumor
-0.3
364
Normal
-0.3
641
Tumor
-0.3
984
Normal
-0.3
882
Normal
-0.3
356
Normal
-0.3
878
Normal
-0.3
385
Tumor
-0.4
474
Normal
-0.4
817
Tumor
-0.4
738
Normal
-0.4
384
Normal
-0.4
223
Tumor
-0.4
478
Normal
-0.4
386
Normal
-0.4
358
Normal
-0.4
354
Normal
-0.4
925
Tumor
-0.4
484
Normal
-0.4
436
Normal
-0.4
344
Normal
-0.4
866
Normal
-0.4
538
Normal
-0.5
342
Normal
-0.5
571
Tumor
-0.5
435
Tumor
-0.5
572
Normal
-0.5
913
Tumor
-0.5
352
Normal
-0.5
818
Normal
-0.5
471
Tumor
-0.5
914
Normal
-0.5
558
Normal
-0.6
857
Tumor
-0.6
852
Normal
-0.6
494
Normal
-0.6
488
Normal
-0.6
858
Normal
-0.7
487
Tumor
-0.8
862
Normal
-0.8
815
Tumor
-0.8
823
Tumor
-0.9
868
Normal
-0.9
816
Normal
-0.9
824
Normal
-0.9
851
Tumor
-1.0
627
Tumor
-1.1
615
Tumor
-1.2
557
Tumor
-1.2
616
Normal
-1.2
861
Tumor
-1.2
492
Normal
-1.3
473
Tumor
-1.3
628
Normal
-1.3
491
Tumor
-1.3
867
Tumor
-1.3
231
Tumor
N/A
232
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
271
Tumor
N/A
272
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
722
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
1046
Normal
N/A
1045
Tumor
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
455
Tumor
N/A
697
Tumor
N/A
456
Normal
N/A
698
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
