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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
R3HDM4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
94.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
82.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
76.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
68.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
67.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
65.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
63.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
62.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
62.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
58.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
57.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
57.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
57.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
57.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
55.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
54.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
53.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
53.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
53.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
52.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
52.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
51.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
51.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
50.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
50.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
49.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
48.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
47.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
47.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
46.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
46.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
46.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
45.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
44.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
43.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
43.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
43.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
43.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
43.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
42.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
42.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
42.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
42.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
42.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
42.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
41.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
41.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
40.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
40.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
40.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
39.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
39.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
39.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
39.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
38.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
37.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
37.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
37.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
36.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
36.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
36.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
36.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
36.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
36.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
36.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
36.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
36.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
35.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
35.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
34.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
33.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
33.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
32.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
32.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
31.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
31.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
31.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
30.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
30.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
30.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
29.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
29.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
29.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
29.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
28.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
28.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
27.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
26.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
26.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
26.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
24.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
23.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
21.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
20.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
20.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
1.9
137
Tumor
1.6
395
Tumor
1.5
427
Tumor
1.4
414
Normal
1.4
426
Normal
1.3
423
Tumor
1.3
375
Tumor
1.3
331
Tumor
1.2
421
Tumor
1.2
478
Normal
1.2
424
Normal
1.1
422
Normal
1.1
428
Normal
1.1
477
Tumor
1.0
1042
Normal
0.8
785
Tumor
0.8
1028
Normal
0.8
351
Tumor
0.8
482
Normal
0.8
473
Tumor
0.8
697
Tumor
0.7
481
Tumor
0.7
425
Tumor
0.7
1026
Normal
0.7
951
Tumor
0.6
913
Tumor
0.6
327
Tumor
0.6
1015
Tumor
0.6
567
Tumor
0.6
221
Tumor
0.6
915
Tumor
0.6
368
Normal
0.6
953
Tumor
0.6
171
Tumor
0.5
413
Tumor
0.5
672
Normal
0.5
671
Tumor
0.5
851
Tumor
0.5
743
Tumor
0.5
412
Normal
0.5
217
Tumor
0.5
664
Normal
0.4
722
Normal
0.4
472
Normal
0.4
648
Normal
0.4
721
Tumor
0.4
665
Tumor
0.4
666
Normal
0.4
513
Tumor
0.4
474
Normal
0.4
696
Normal
0.4
911
Tumor
0.4
817
Tumor
0.4
223
Tumor
0.4
415
Tumor
0.3
328
Normal
0.3
713
Tumor
0.3
524
Normal
0.3
462
Normal
0.3
416
Normal
0.3
557
Tumor
0.3
516
Normal
0.3
968
Normal
0.3
452
Normal
0.3
483
Tumor
0.3
714
Normal
0.3
466
Normal
0.3
755
Tumor
0.3
356
Normal
0.3
867
Tumor
0.3
955
Tumor
0.3
981
Tumor
0.3
964
Normal
0.2
1014
Normal
0.2
353
Tumor
0.2
271
Tumor
0.2
447
Tumor
0.2
444
Normal
0.2
627
Tumor
0.2
912
Normal
0.2
1016
Normal
0.2
642
Normal
0.2
436
Normal
0.2
741
Tumor
0.2
515
Tumor
0.2
526
Normal
0.2
823
Tumor
0.2
211
Tumor
0.2
916
Normal
0.2
465
Tumor
0.2
518
Normal
0.2
435
Tumor
0.2
364
Normal
0.1
958
Normal
0.1
388
Normal
0.1
446
Normal
0.1
471
Tumor
0.1
387
Tumor
0.1
132
Normal
0.1
366
Normal
0.1
494
Normal
0.1
546
Normal
0.1
857
Tumor
0.1
976
Normal
0.1
1046
Normal
0.1
432
Normal
0.1
218
Normal
0.1
484
Normal
0.1
431
Tumor
0.1
956
Normal
0.1
433
Tumor
0.1
881
Tumor
0.1
186
Normal
0.1
877
Tumor
0.1
222
Normal
0.1
1032
Normal
0.1
488
Normal
0.1
468
Normal
0.1
618
Normal
0.1
192
Normal
0.1
456
Normal
0.1
716
Normal
0.1
1045
Tumor
0.1
982
Normal
0.1
187
Tumor
0.1
922
Normal
0.0
574
Normal
0.0
514
Normal
0.0
815
Tumor
0.0
411
Tumor
0.0
272
Normal
0.0
145
Tumor
0.0
564
Normal
0.0
148
Normal
0.0
383
Tumor
0.0
362
Normal
0.0
695
Tumor
0.0
497
Tumor
0.0
172
Normal
0.0
461
Tumor
0.0
963
Tumor
0.0
662
Normal
0.0
863
Tumor
0.0
455
Tumor
0.0
367
Tumor
0.0
572
Normal
0.0
261
Tumor
0.0
923
Tumor
0.0
394
Normal
0.0
162
Normal
0.0
214
Normal
0.0
141
Tumor
0.0
686
Normal
0.0
1044
Normal
0.0
361
Tumor
0.0
636
Normal
0.0
568
Normal
0.0
396
Normal
0.0
663
Tumor
0.0
136
Normal
0.0
884
Normal
0.0
445
Tumor
0.0
975
Tumor
0.0
647
Tumor
0.0
213
Tumor
0.0
978
Normal
0.0
724
Normal
0.0
563
Tumor
-0.1
944
Normal
-0.1
392
Normal
-0.1
268
Normal
-0.1
443
Tumor
-0.1
615
Tumor
-0.1
864
Normal
-0.1
553
Tumor
-0.1
212
Normal
-0.1
535
Tumor
-0.1
354
Normal
-0.1
538
Normal
-0.1
492
Normal
-0.1
882
Normal
-0.1
873
Tumor
-0.1
386
Normal
-0.1
312
Normal
-0.1
728
Normal
-0.1
185
Tumor
-0.1
661
Tumor
-0.1
756
Normal
-0.1
434
Normal
-0.1
344
Normal
-0.1
628
Normal
-0.1
852
Normal
-0.1
984
Normal
-0.1
527
Tumor
-0.1
464
Normal
-0.1
278
Normal
-0.1
451
Tumor
-0.1
341
Tumor
-0.1
698
Normal
-0.1
616
Normal
-0.1
977
Tumor
-0.1
914
Normal
-0.1
952
Normal
-0.1
861
Tumor
-0.1
448
Normal
-0.1
358
Normal
-0.1
188
Normal
-0.1
357
Tumor
-0.1
571
Tumor
-0.1
1043
Tumor
-0.1
195
Tumor
-0.2
191
Tumor
-0.2
925
Tumor
-0.2
573
Tumor
-0.2
924
Normal
-0.2
286
Normal
-0.2
558
Normal
-0.2
883
Tumor
-0.2
196
Normal
-0.2
926
Normal
-0.2
385
Tumor
-0.2
1013
Tumor
-0.2
554
Normal
-0.2
858
Normal
-0.2
142
Normal
-0.2
874
Normal
-0.2
816
Normal
-0.2
393
Tumor
-0.2
641
Tumor
-0.2
384
Normal
-0.2
918
Normal
-0.2
746
Normal
-0.2
523
Tumor
-0.3
391
Tumor
-0.3
498
Normal
-0.3
363
Tumor
-0.3
284
Normal
-0.3
965
Tumor
-0.3
352
Normal
-0.3
966
Normal
-0.3
723
Tumor
-0.3
866
Normal
-0.3
534
Normal
-0.3
258
Normal
-0.3
744
Normal
-0.3
232
Normal
-0.3
262
Normal
-0.3
528
Normal
-0.3
525
Tumor
-0.3
135
Tumor
-0.3
138
Normal
-0.3
131
Tumor
-0.3
355
Tumor
-0.3
617
Tumor
-0.3
537
Tumor
-0.3
868
Normal
-0.3
467
Tumor
-0.4
938
Normal
-0.4
342
Normal
-0.4
161
Tumor
-0.4
983
Tumor
-0.4
865
Tumor
-0.4
267
Tumor
-0.4
862
Normal
-0.4
231
Tumor
-0.4
954
Normal
-0.4
365
Tumor
-0.4
493
Tumor
-0.4
917
Tumor
-0.4
967
Tumor
-0.4
545
Tumor
-0.4
491
Tumor
-0.4
536
Normal
-0.4
228
Normal
-0.4
715
Tumor
-0.4
517
Tumor
-0.4
738
Normal
-0.4
376
Normal
-0.4
778
Normal
-0.4
487
Tumor
-0.4
297
Tumor
-0.4
147
Tumor
-0.4
921
Tumor
-0.5
742
Normal
-0.5
878
Normal
-0.5
786
Normal
-0.5
937
Tumor
-0.5
298
Normal
-0.5
824
Normal
-0.5
224
Normal
-0.5
533
Tumor
-0.5
311
Tumor
-0.5
283
Tumor
-0.6
277
Tumor
-0.6
814
Normal
-0.6
146
Normal
-0.6
1041
Tumor
-0.6
943
Tumor
-0.6
314
Normal
-0.6
818
Normal
-0.6
727
Tumor
-0.6
332
Normal
-0.6
1022
Normal
-0.6
463
Tumor
-0.6
813
Tumor
-0.6
1031
Tumor
-0.7
745
Tumor
-0.7
635
Tumor
-0.7
343
Tumor
-0.8
1025
Tumor
-0.8
737
Tumor
-0.8
313
Tumor
-0.8
777
Tumor
-0.8
957
Tumor
-0.8
285
Tumor
-0.9
1027
Tumor
-1.0
227
Tumor
-1.0
257
Tumor
-1.1
1021
Tumor
-1.2
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
