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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SELENOT is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
86.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
86.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
78.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
75.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
74.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
74.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
67.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
67.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
67.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
64.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
64.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
63.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
63.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
61.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
60.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
60.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
60.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
58.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
57.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
54.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
54.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
54.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
54.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
54.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
54.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
51.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
51.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
51.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
49.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
49.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
49.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
48.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
47.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
47.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
47.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
46.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
46.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
46.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
46.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
46.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
46.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
44.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
44.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
44.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
44.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
44.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
43.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
43.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
43.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
43.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
43.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
43.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
43.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
43.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
42.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
42.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
42.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
42.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
41.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
41.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
41.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
41.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
40.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
40.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
40.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
40.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
40.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
39.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
39.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
39.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
38.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
38.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
38.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
38.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
38.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
38.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
38.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
37.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
37.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
37.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
37.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
36.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
36.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
35.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
35.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
35.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
34.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
34.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
34.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
34.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
34.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
33.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
32.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
32.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
32.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
32.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
32.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
31.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
31.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
31.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
31.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
30.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
29.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
29.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
29.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
29.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
29.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
28.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
28.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
28.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
26.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
25.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
24.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
24.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
21.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
20.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
20.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1014
Normal
0.7
745
Tumor
0.7
915
Tumor
0.7
1043
Tumor
0.6
911
Tumor
0.6
983
Tumor
0.6
648
Normal
0.6
863
Tumor
0.6
435
Tumor
0.6
524
Normal
0.5
445
Tumor
0.5
857
Tumor
0.5
1041
Tumor
0.5
912
Normal
0.5
1032
Normal
0.5
554
Normal
0.5
926
Normal
0.5
514
Normal
0.5
954
Normal
0.5
921
Tumor
0.5
1044
Normal
0.5
1022
Normal
0.5
518
Normal
0.4
968
Normal
0.4
862
Normal
0.4
698
Normal
0.4
744
Normal
0.4
616
Normal
0.4
466
Normal
0.4
882
Normal
0.4
938
Normal
0.4
978
Normal
0.4
714
Normal
0.4
967
Tumor
0.4
1046
Normal
0.4
615
Tumor
0.4
963
Tumor
0.4
884
Normal
0.4
1028
Normal
0.4
448
Normal
0.4
364
Normal
0.4
724
Normal
0.4
482
Normal
0.4
1015
Tumor
0.4
112
Tumor
0.4
727
Tumor
0.4
665
Tumor
0.4
742
Normal
0.3
955
Tumor
0.3
232
Normal
0.3
356
Normal
0.3
964
Normal
0.3
481
Tumor
0.3
868
Normal
0.3
478
Normal
0.3
984
Normal
0.3
534
Normal
0.3
696
Normal
0.3
866
Normal
0.3
568
Normal
0.3
142
Normal
0.3
817
Tumor
0.3
816
Normal
0.3
914
Normal
0.3
636
Normal
0.3
526
Normal
0.3
944
Normal
0.3
376
Normal
0.3
666
Normal
0.3
462
Normal
0.3
864
Normal
0.3
564
Normal
0.3
738
Normal
0.3
558
Normal
0.3
922
Normal
0.3
468
Normal
0.3
573
Tumor
0.3
982
Normal
0.3
1026
Normal
0.3
314
Normal
0.3
525
Tumor
0.3
867
Tumor
0.2
148
Normal
0.2
878
Normal
0.2
484
Normal
0.2
1025
Tumor
0.2
1016
Normal
0.2
494
Normal
0.2
916
Normal
0.2
516
Normal
0.2
572
Normal
0.2
977
Tumor
0.2
362
Normal
0.2
298
Normal
0.2
662
Normal
0.2
354
Normal
0.2
1042
Normal
0.2
327
Tumor
0.2
852
Normal
0.2
412
Normal
0.2
824
Normal
0.2
858
Normal
0.2
672
Normal
0.2
536
Normal
0.2
474
Normal
0.2
723
Tumor
0.2
488
Normal
0.2
966
Normal
0.2
958
Normal
0.2
426
Normal
0.2
538
Normal
0.2
128
Normal
0.2
756
Normal
0.2
546
Normal
0.2
222
Normal
0.2
392
Normal
0.2
741
Tumor
0.2
162
Normal
0.2
135
Tumor
0.2
728
Normal
0.2
574
Normal
0.2
628
Normal
0.2
976
Normal
0.2
452
Normal
0.2
492
Normal
0.2
328
Normal
0.2
1045
Tumor
0.2
342
Normal
0.2
498
Normal
0.2
778
Normal
0.2
661
Tumor
0.2
535
Tumor
0.2
715
Tumor
0.2
642
Normal
0.2
262
Normal
0.2
436
Normal
0.2
368
Normal
0.1
464
Normal
0.1
472
Normal
0.1
388
Normal
0.1
384
Normal
0.1
523
Tumor
0.1
365
Tumor
0.1
618
Normal
0.1
567
Tumor
0.1
686
Normal
0.1
416
Normal
0.1
664
Normal
0.1
172
Normal
0.1
721
Tumor
0.1
212
Normal
0.1
722
Normal
0.1
528
Normal
0.1
228
Normal
0.1
284
Normal
0.1
746
Normal
0.1
483
Tumor
0.1
186
Normal
0.1
874
Normal
0.1
456
Normal
0.1
617
Tumor
0.1
952
Normal
0.1
211
Tumor
0.1
278
Normal
0.1
918
Normal
0.1
258
Normal
0.1
366
Normal
0.1
924
Normal
0.1
785
Tumor
0.1
446
Normal
0.1
981
Tumor
0.1
415
Tumor
0.1
427
Tumor
0.1
422
Normal
0.1
937
Tumor
0.1
111
Normal
0.1
444
Normal
0.1
196
Normal
0.1
428
Normal
0.1
716
Normal
0.1
533
Tumor
0.1
272
Normal
0.1
786
Normal
0.1
956
Normal
0.1
627
Tumor
0.1
447
Tumor
0.1
358
Normal
0.0
818
Normal
0.0
332
Normal
0.0
227
Tumor
0.0
823
Tumor
0.0
124
Normal
0.0
877
Tumor
0.0
515
Tumor
0.0
641
Tumor
0.0
351
Tumor
0.0
132
Normal
0.0
126
Normal
0.0
432
Normal
0.0
513
Tumor
0.0
471
Tumor
0.0
685
Tumor
0.0
387
Tumor
0.0
191
Tumor
0.0
925
Tumor
0.0
268
Normal
0.0
352
Normal
0.0
424
Normal
0.0
261
Tumor
N/A
815
Tumor
0.0
861
Tumor
0.0
394
Normal
0.0
493
Tumor
0.0
755
Tumor
0.0
271
Tumor
0.0
127
Tumor
0.0
431
Tumor
0.0
553
Tumor
0.0
188
Normal
0.0
257
Tumor
0.0
491
Tumor
0.0
414
Normal
0.0
517
Tumor
0.0
663
Tumor
0.0
343
Tumor
0.0
286
Normal
0.0
1031
Tumor
0.0
224
Normal
0.0
138
Normal
-0.1
195
Tumor
-0.1
341
Tumor
-0.1
975
Tumor
-0.1
957
Tumor
-0.1
913
Tumor
-0.1
396
Normal
-0.1
497
Tumor
-0.1
131
Tumor
-0.1
451
Tumor
-0.1
146
Normal
-0.1
467
Tumor
-0.1
851
Tumor
-0.1
917
Tumor
-0.1
218
Normal
-0.1
361
Tumor
-0.1
312
Normal
-0.1
1027
Tumor
-0.1
1013
Tumor
-0.1
635
Tumor
-0.1
943
Tumor
-0.1
965
Tumor
-0.1
214
Normal
-0.1
231
Tumor
-0.1
713
Tumor
-0.1
951
Tumor
-0.1
473
Tumor
-0.1
537
Tumor
-0.1
192
Normal
-0.1
221
Tumor
-0.1
671
Tumor
-0.1
647
Tumor
-0.1
865
Tumor
-0.2
383
Tumor
-0.2
413
Tumor
-0.2
125
Tumor
-0.2
161
Tumor
-0.2
737
Tumor
-0.2
443
Tumor
-0.2
267
Tumor
-0.2
187
Tumor
-0.2
465
Tumor
-0.2
563
Tumor
-0.2
213
Tumor
-0.2
311
Tumor
-0.2
477
Tumor
-0.2
433
Tumor
-0.2
873
Tumor
-0.2
395
Tumor
-0.2
344
Normal
-0.2
743
Tumor
-0.2
434
Normal
-0.2
881
Tumor
-0.2
114
Normal
-0.2
136
Normal
-0.2
145
Tumor
-0.2
113
Tumor
-0.2
423
Tumor
-0.3
185
Tumor
-0.3
461
Tumor
-0.3
353
Tumor
-0.3
386
Normal
-0.3
217
Tumor
-0.3
147
Tumor
-0.3
421
Tumor
-0.3
123
Tumor
-0.3
487
Tumor
-0.3
331
Tumor
-0.3
137
Tumor
-0.3
425
Tumor
-0.4
463
Tumor
-0.4
285
Tumor
-0.4
1021
Tumor
-0.4
393
Tumor
-0.4
777
Tumor
-0.4
953
Tumor
-0.4
813
Tumor
-0.4
171
Tumor
-0.4
697
Tumor
-0.4
814
Normal
-0.4
223
Tumor
-0.4
883
Tumor
-0.4
557
Tumor
-0.4
277
Tumor
-0.4
411
Tumor
-0.4
391
Tumor
-0.5
367
Tumor
-0.5
283
Tumor
-0.5
545
Tumor
-0.5
385
Tumor
-0.5
297
Tumor
-0.5
923
Tumor
-0.5
141
Tumor
-0.5
527
Tumor
-0.5
355
Tumor
-0.6
357
Tumor
-0.6
695
Tumor
-0.6
455
Tumor
-0.6
313
Tumor
-0.6
363
Tumor
-0.7
375
Tumor
-0.8
571
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
