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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF277 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
30.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
11.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
3.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZNF277 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
41.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
29.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
27.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
2.2
537
Tumor
1.5
866
Normal
1.3
516
Normal
1.3
351
Tumor
1.3
331
Tumor
1.3
873
Tumor
1.2
523
Tumor
1.2
518
Normal
1.2
865
Tumor
1.2
267
Tumor
1.2
911
Tumor
1.1
867
Tumor
1.1
874
Normal
1.1
1041
Tumor
1.0
957
Tumor
0.9
983
Tumor
0.9
864
Normal
0.9
967
Tumor
0.9
863
Tumor
0.9
227
Tumor
0.9
515
Tumor
0.8
1021
Tumor
0.8
965
Tumor
0.8
571
Tumor
0.8
513
Tumor
0.8
815
Tumor
0.8
526
Normal
0.8
861
Tumor
0.7
131
Tumor
0.7
261
Tumor
0.7
671
Tumor
0.7
327
Tumor
0.7
647
Tumor
0.7
191
Tumor
0.7
817
Tumor
0.7
1025
Tumor
0.7
123
Tumor
0.6
533
Tumor
0.6
527
Tumor
0.6
473
Tumor
0.5
1027
Tumor
0.5
517
Tumor
0.5
661
Tumor
0.5
285
Tumor
0.5
387
Tumor
0.5
877
Tumor
0.5
391
Tumor
0.5
851
Tumor
0.5
545
Tumor
0.4
724
Normal
0.4
395
Tumor
0.4
257
Tumor
0.4
937
Tumor
0.4
471
Tumor
0.4
1031
Tumor
0.4
883
Tumor
0.4
355
Tumor
0.4
923
Tumor
0.4
353
Tumor
0.4
433
Tumor
0.4
211
Tumor
0.3
615
Tumor
0.3
755
Tumor
0.3
925
Tumor
0.3
955
Tumor
0.3
557
Tumor
0.3
367
Tumor
0.3
525
Tumor
0.3
573
Tumor
0.3
413
Tumor
0.3
567
Tumor
0.3
363
Tumor
0.3
665
Tumor
0.3
283
Tumor
0.3
431
Tumor
0.3
862
Normal
0.3
953
Tumor
0.3
1015
Tumor
0.2
425
Tumor
0.2
514
Normal
0.2
743
Tumor
0.2
223
Tumor
0.2
963
Tumor
0.2
785
Tumor
0.2
231
Tumor
0.2
568
Normal
0.2
952
Normal
0.2
564
Normal
0.2
497
Tumor
0.2
465
Tumor
0.2
881
Tumor
0.2
627
Tumor
0.2
481
Tumor
0.2
447
Tumor
0.2
715
Tumor
0.2
535
Tumor
0.1
913
Tumor
0.1
697
Tumor
0.1
951
Tumor
0.1
477
Tumor
0.1
427
Tumor
0.1
423
Tumor
0.1
641
Tumor
0.1
915
Tumor
0.1
524
Normal
0.1
452
Normal
0.1
977
Tumor
0.1
857
Tumor
0.1
944
Normal
0.1
868
Normal
0.1
938
Normal
0.1
145
Tumor
0.1
493
Tumor
0.1
574
Normal
0.1
777
Tumor
0.1
958
Normal
0.1
135
Tumor
0.1
786
Normal
0.0
721
Tumor
0.0
187
Tumor
0.0
984
Normal
0.0
823
Tumor
0.0
171
Tumor
0.0
137
Tumor
0.0
572
Normal
0.0
466
Normal
0.0
975
Tumor
0.0
483
Tumor
0.0
195
Tumor
0.0
917
Tumor
0.0
713
Tumor
0.0
141
Tumor
0.0
213
Tumor
0.0
745
Tumor
0.0
536
Normal
0.0
1032
Normal
0.0
814
Normal
0.0
978
Normal
0.0
954
Normal
0.0
385
Tumor
0.0
127
Tumor
0.0
916
Normal
0.0
1028
Normal
0.0
553
Tumor
0.0
357
Tumor
0.0
386
Normal
-0.1
113
Tumor
-0.1
311
Tumor
-0.1
455
Tumor
-0.1
756
Normal
-0.1
1022
Normal
-0.1
1046
Normal
-0.1
956
Normal
-0.1
1014
Normal
-0.1
966
Normal
-0.1
384
Normal
-0.1
1013
Tumor
-0.1
297
Tumor
-0.1
922
Normal
-0.1
212
Normal
-0.1
125
Tumor
-0.1
727
Tumor
-0.1
284
Normal
-0.1
268
Normal
-0.1
813
Tumor
-0.1
1045
Tumor
-0.1
968
Normal
-0.1
488
Normal
-0.1
228
Normal
-0.1
383
Tumor
-0.1
1044
Normal
-0.1
824
Normal
-0.1
394
Normal
-0.2
368
Normal
-0.2
546
Normal
-0.2
388
Normal
-0.2
618
Normal
-0.2
943
Tumor
-0.2
558
Normal
-0.2
396
Normal
-0.2
698
Normal
-0.2
376
Normal
-0.2
271
Tumor
-0.2
393
Tumor
-0.2
456
Normal
-0.2
498
Normal
-0.2
912
Normal
-0.2
778
Normal
-0.2
361
Tumor
-0.2
921
Tumor
-0.2
714
Normal
-0.2
964
Normal
-0.2
976
Normal
-0.2
375
Tumor
-0.2
422
Normal
-0.2
463
Tumor
-0.2
484
Normal
-0.2
686
Normal
-0.2
852
Normal
-0.2
563
Tumor
-0.2
421
Tumor
-0.2
487
Tumor
-0.2
528
Normal
-0.2
448
Normal
-0.2
538
Normal
-0.3
392
Normal
-0.3
415
Tumor
-0.3
365
Tumor
-0.3
1026
Normal
-0.3
1016
Normal
-0.3
478
Normal
-0.3
468
Normal
-0.3
722
Normal
-0.3
816
Normal
-0.3
491
Tumor
-0.3
746
Normal
-0.3
467
Tumor
-0.3
217
Tumor
-0.3
1042
Normal
-0.3
472
Normal
-0.3
461
Tumor
-0.3
716
Normal
-0.3
737
Tumor
-0.3
464
Normal
-0.3
221
Tumor
-0.3
232
Normal
-0.3
1043
Tumor
-0.3
341
Tumor
-0.3
642
Normal
-0.3
262
Normal
-0.3
648
Normal
-0.3
982
Normal
-0.3
636
Normal
-0.3
738
Normal
-0.4
494
Normal
-0.4
224
Normal
-0.4
616
Normal
-0.4
728
Normal
-0.4
286
Normal
-0.4
451
Tumor
-0.4
744
Normal
-0.4
142
Normal
-0.4
412
Normal
-0.4
411
Tumor
-0.4
554
Normal
-0.4
492
Normal
-0.4
534
Normal
-0.4
364
Normal
-0.4
435
Tumor
-0.4
428
Normal
-0.4
635
Tumor
-0.4
741
Tumor
-0.4
426
Normal
-0.4
132
Normal
-0.4
858
Normal
-0.4
981
Tumor
-0.4
343
Tumor
-0.4
278
Normal
-0.4
362
Normal
-0.4
352
Normal
-0.4
878
Normal
-0.5
818
Normal
-0.5
445
Tumor
-0.5
424
Normal
-0.5
272
Normal
-0.5
924
Normal
-0.5
628
Normal
-0.5
723
Tumor
-0.5
664
Normal
-0.5
313
Tumor
-0.5
443
Tumor
-0.5
222
Normal
-0.5
882
Normal
-0.5
356
Normal
-0.5
663
Tumor
-0.5
696
Normal
-0.5
926
Normal
-0.5
444
Normal
-0.5
672
Normal
-0.5
328
Normal
-0.5
185
Tumor
-0.5
354
Normal
-0.5
414
Normal
-0.5
196
Normal
-0.5
474
Normal
-0.5
138
Normal
-0.5
136
Normal
-0.5
742
Normal
-0.6
482
Normal
-0.6
112
Tumor
-0.6
128
Normal
-0.6
147
Tumor
-0.6
146
Normal
-0.6
214
Normal
-0.6
884
Normal
-0.6
188
Normal
-0.6
416
Normal
-0.6
918
Normal
-0.6
192
Normal
-0.6
436
Normal
-0.6
617
Tumor
-0.6
126
Normal
-0.6
114
Normal
-0.6
446
Normal
-0.6
172
Normal
-0.7
314
Normal
-0.7
434
Normal
-0.7
218
Normal
-0.7
344
Normal
-0.7
258
Normal
-0.7
366
Normal
-0.7
332
Normal
-0.7
148
Normal
-0.7
298
Normal
-0.7
277
Tumor
-0.7
462
Normal
-0.7
312
Normal
-0.8
432
Normal
-0.8
124
Normal
-0.8
162
Normal
-0.8
111
Normal
-0.8
662
Normal
-0.8
342
Normal
-0.8
161
Tumor
-0.8
695
Tumor
-0.8
186
Normal
-0.9
914
Normal
-0.9
358
Normal
-1.0
666
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
