Expression of SELENOM in liver cancer - The Human Protein Atlas

LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

SELENOM is not prognostic in Liver Hepatocellular Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 45.35

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average TPM

71.6

Number of samples

362

Samples

Sample	Description	TPM
TCGA-G3-A25X-01A	0 years, male, asian, stage:Stage II, alive, 1779 days	691.0
TCGA-DD-AACI-01A	0 years, male, asian, stage:Stage II, alive, 1618 days	496.2
TCGA-DD-A3A7-01A	0 years, male, stage:Stage IIIB, dead, 419 days	474.7
TCGA-DD-AAVV-01A	0 years, male, asian, stage:Stage II, alive, 2455 days	407.5
TCGA-EP-A3RK-01A	0 years, male, white, stage:Stage IIIA, alive, 363 days	405.7
TCGA-FV-A4ZP-01A	0 years, male, white, stage:Stage IIIA, dead, 2486 days	393.8
TCGA-ED-A459-01A	0 years, male, asian, stage:Stage II, alive, 910 days	392.2
TCGA-BC-A112-01A	0 years, male, white, stage:'--, dead, 153 days	391.6
TCGA-BC-A10R-01A	0 years, female, white, stage:'--, dead, 308 days	337.8
TCGA-WQ-A9G7-01A	0 years, female, white, stage:'--, alive, 30 days	337.3
TCGA-DD-A3A3-01A	0 years, male, asian, stage:Stage I, dead, 535 days	329.1
TCGA-UB-A7MA-01A	0 years, female, white, stage:Stage II, alive, 848 days	328.5
TCGA-G3-AAV7-01A	0 years, male, asian, stage:Stage II, alive, 361 days	313.0
TCGA-DD-A116-01A	0 years, male, asian, stage:Stage IIIA, dead, 1622 days	308.0
TCGA-DD-AADK-01A	0 years, female, asian, stage:Stage II, alive, 1049 days	306.8
TCGA-ZP-A9D2-01A	0 years, male, white, stage:'--, dead, 765 days	306.3
TCGA-DD-AACJ-01A	0 years, male, asian, stage:Stage II, alive, 2102 days	290.3
TCGA-DD-AADI-01A	0 years, female, asian, stage:Stage I, alive, 1085 days	285.0
TCGA-CC-A8HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 140 days	277.8
TCGA-DD-A4NH-01A	0 years, female, white, stage:Stage IIIB, alive, 917 days	274.1
TCGA-DD-AAE0-01A	0 years, female, asian, stage:Stage IIIA, alive, 555 days	243.9
TCGA-DD-A4NO-01A	0 years, male, white, stage:Stage I, alive, 2245 days	242.4
TCGA-CC-A5UE-01A	0 years, male, asian, stage:Stage IIIB, dead, 272 days	235.0
TCGA-DD-AA3A-01A	0 years, female, white, stage:Stage I, dead, 410 days	231.8
TCGA-HP-A5MZ-01A	0 years, male, stage:Stage I, dead, 91 days	231.4
TCGA-FV-A495-01A	0 years, female, white, stage:Stage II, alive, 1 days	225.1
TCGA-G3-A5SM-01A	0 years, male, white, stage:Stage II, alive, 520 days	222.3
TCGA-CC-A3M9-01A	0 years, male, asian, stage:Stage IIIA, dead, 300 days	218.9
TCGA-ED-A7PX-01A	0 years, female, asian, stage:Stage II, alive, 6 days	216.2
TCGA-2Y-A9H1-01A	0 years, male, white, stage:Stage I, dead, 1229 days	215.5
TCGA-CC-A3MC-01A	0 years, male, asian, stage:Stage IIIA, alive, 363 days	213.7
TCGA-CC-A7IJ-01A	0 years, male, asian, stage:Stage II, alive, 382 days	213.1
TCGA-CC-A1HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 101 days	205.1
TCGA-DD-A119-01A	0 years, male, asian, stage:Stage IV, dead, 223 days	200.1
TCGA-DD-A1EL-01A	0 years, male, black or african american, stage:Stage II, dead, 415 days	197.6
TCGA-2Y-A9H2-01A	0 years, female, white, stage:Stage I, alive, 1731 days	197.5
TCGA-BC-A10W-01A	0 years, male, asian, stage:'--, dead, 91 days	194.4
TCGA-ED-A7PZ-01A	0 years, male, asian, stage:Stage II, alive, 6 days	192.9
TCGA-DD-A39Y-01A	0 years, male, asian, stage:Stage I, dead, 171 days	191.9
TCGA-DD-AACT-01A	0 years, female, asian, stage:Stage I, alive, 1562 days	187.2
TCGA-G3-A7M6-01A	0 years, female, white, stage:Stage I, alive, 632 days	186.9
TCGA-2Y-A9GX-01A	0 years, male, white, stage:Stage I, alive, 2442 days	185.5
TCGA-2Y-A9GY-01A	0 years, female, white, stage:Stage II, dead, 757 days	182.6
TCGA-CC-5261-01A	0 years, male, asian, stage:Stage II, dead, 97 days	178.6
TCGA-DD-AAD5-01A	0 years, male, asian, stage:Stage I, alive, 1345 days	166.5
TCGA-DD-A4NB-01A	0 years, male, white, stage:Stage I, alive, 989 days	163.5
TCGA-DD-A1EC-01A	0 years, female, white, stage:Stage I, alive, 602 days	163.3
TCGA-EP-A3JL-01A	0 years, male, white, stage:Stage I, alive, 303 days	158.3
TCGA-DD-AAD2-01A	0 years, male, asian, stage:Stage I, alive, 658 days	158.0
TCGA-DD-AACH-01A	0 years, male, asian, stage:Stage II, dead, 195 days	157.7
TCGA-WX-AA44-01A	0 years, female, white, stage:Stage I, alive, 615 days	156.4
TCGA-DD-AAD1-01A	0 years, female, asian, stage:Stage I, alive, 564 days	156.1
TCGA-GJ-A6C0-01A	0 years, female, white, stage:Stage II, dead, 31 days	155.5
TCGA-DD-AADO-01A	0 years, male, asian, stage:Stage I, alive, 453 days	152.9
TCGA-DD-A1EG-01A	0 years, male, white, stage:Stage I, dead, 1372 days	151.7
TCGA-CC-A7II-01A	0 years, male, asian, stage:Stage IIIA, alive, 399 days	149.1
TCGA-DD-AACL-01A	0 years, female, asian, stage:Stage I, dead, 107 days	148.4
TCGA-DD-AADN-01A	0 years, male, asian, stage:Stage I, alive, 898 days	147.2
TCGA-CC-5259-01A	0 years, female, asian, stage:Stage IIIC, alive, 250 days	145.7
TCGA-DD-A3A6-01A	0 years, female, white, stage:Stage II, dead, 3258 days	141.9
TCGA-ED-A5KG-01A	0 years, female, asian, stage:Stage II, alive, 854 days	135.8
TCGA-DD-AACS-01A	0 years, male, asian, stage:Stage I, alive, 1804 days	135.7
TCGA-CC-A3MA-01A	0 years, male, asian, stage:Stage IIIA, dead, 303 days	129.6
TCGA-ED-A97K-01A	0 years, male, asian, stage:Stage IIIA, alive, 6 days	129.6
TCGA-MI-A75I-01A	0 years, male, black or african american, stage:'--, alive, 630 days	129.5
TCGA-KR-A7K7-01A	0 years, female, white, stage:Stage II, alive, 951 days	125.0
TCGA-ED-A66X-01A	0 years, male, asian, stage:Stage IIIA, alive, 406 days	122.4
TCGA-UB-A7MD-01A	0 years, male, black or african american, stage:Stage I, dead, 52 days	121.6
TCGA-RC-A7SH-01A	0 years, male, asian, stage:Stage II, alive, 468 days	116.9
TCGA-T1-A6J8-01A	0 years, male, white, stage:'--, alive, 23 days	116.4
TCGA-DD-AAW0-01A	0 years, male, asian, stage:Stage I, alive, 2015 days	116.0
TCGA-DD-A3A1-01A	0 years, male, stage:Stage IIIA, dead, 233 days	113.6
TCGA-DD-A1EJ-01A	0 years, female, white, stage:Stage IIIC, dead, 1005 days	112.5
TCGA-CC-5258-01A	0 years, male, asian, stage:Stage II, dead, 129 days	109.8
TCGA-ED-A7XP-01A	0 years, female, asian, stage:Stage II, alive, 400 days	109.7
TCGA-FV-A3R2-01A	0 years, male, white, stage:Stage I, dead, 194 days	109.4
TCGA-DD-AAVW-01A	0 years, male, asian, stage:Stage I, alive, 2317 days	109.3
TCGA-DD-A4NR-01A	0 years, female, white, stage:Stage I, dead, 9 days	109.3
TCGA-G3-A25S-01A	0 years, male, white, stage:Stage I, dead, 416 days	106.2
TCGA-ED-A8O6-01A	0 years, female, asian, stage:Stage IIIA, dead, 56 days	104.0
TCGA-WJ-A86L-01A	0 years, female, white, stage:Stage I, alive, 345 days	104.0
TCGA-K7-A5RG-01A	0 years, male, black or african american, stage:Stage I, alive, 519 days	103.6
TCGA-2Y-A9H4-01A	0 years, male, black or african american, stage:Stage I, alive, 1452 days	103.3
TCGA-FV-A3I1-01A	0 years, female, white, stage:Stage II, dead, 247 days	103.0
TCGA-DD-AADB-01A	0 years, male, asian, stage:Stage I, alive, 1242 days	102.6
TCGA-DD-A3A9-01A	0 years, female, white, stage:Stage IVB, dead, 931 days	100.3
TCGA-GJ-A9DB-01A	0 years, male, white, stage:Stage I, dead, 67 days	99.5
TCGA-ZP-A9CZ-01A	0 years, male, asian, stage:'--, alive, 706 days	99.1
TCGA-DD-A114-01A	0 years, male, black or african american, stage:Stage II, dead, 1149 days	98.5
TCGA-O8-A75V-01A	0 years, male, stage:Stage I, alive, 538 days	97.8
TCGA-DD-AAVQ-01A	0 years, male, asian, stage:Stage I, alive, 2728 days	93.8
TCGA-CC-A8HS-01A	0 years, male, asian, stage:Stage IIIC, dead, 300 days	93.7
TCGA-5C-AAPD-01A	0 years, male, asian, stage:Stage II, alive, 20 days	93.3
TCGA-UB-A7MB-01A	0 years, male, white, stage:Stage II, alive, 601 days	90.9
TCGA-G3-A3CH-01A	0 years, male, asian, stage:Stage IIIA, alive, 780 days	89.7
TCGA-DD-A113-01A	0 years, female, white, stage:Stage II, alive, 2425 days	89.5
TCGA-FV-A3I0-01A	0 years, female, white, stage:Stage II, alive, 848 days	87.5
TCGA-MR-A8JO-01A	0 years, male, white, stage:Stage I, alive, 330 days	87.1
TCGA-BC-A216-01A	0 years, female, white, stage:Stage IIIA, alive, 1351 days	86.6
TCGA-DD-AAEG-01A	0 years, female, asian, stage:Stage I, alive, 719 days	84.8
TCGA-DD-A4NS-01A	0 years, female, white, stage:Stage I, dead, 2456 days	82.0
TCGA-RC-A7SK-01A	0 years, male, asian, stage:Stage I, alive, 472 days	81.7
TCGA-CC-A8HV-01A	0 years, female, asian, stage:Stage II, dead, 279 days	80.0
TCGA-CC-5264-01A	0 years, male, asian, stage:Stage IIIA, dead, 102 days	77.6
TCGA-DD-AAC9-01A	0 years, male, asian, stage:Stage I, alive, 347 days	76.3
TCGA-DD-AACZ-01A	0 years, female, asian, stage:Stage I, dead, 171 days	75.9
TCGA-DD-AADM-01A	0 years, male, asian, stage:Stage II, dead, 12 days	74.0
TCGA-G3-A25Y-01A	0 years, female, asian, stage:Stage I, dead, 452 days	73.9
TCGA-DD-AAVP-01A	0 years, male, asian, stage:Stage I, alive, 2752 days	72.8
TCGA-G3-A7M9-01A	0 years, male, white, stage:Stage IIIB, dead, 56 days	71.8
TCGA-ES-A2HT-01A	0 years, male, black or african american, stage:Stage I, dead, 438 days	71.5
TCGA-G3-A3CG-01A	0 years, male, white, stage:Stage I, alive, 673 days	71.3
TCGA-DD-AAED-01A	0 years, male, asian, stage:Stage I, alive, 763 days	70.3
TCGA-XR-A8TD-01A	0 years, female, white, stage:Stage IIIB, alive, 1030 days	70.1
TCGA-RC-A7SF-01A	0 years, male, asian, stage:Stage I, alive, 579 days	69.4
TCGA-DD-AACG-01A	0 years, male, asian, stage:Stage II, dead, 469 days	68.5
TCGA-CC-A7IE-01A	0 years, male, asian, stage:Stage IIIA, dead, 217 days	68.3
TCGA-GJ-A3OU-01A	0 years, male, white, stage:Stage I, alive, 879 days	67.8
TCGA-DD-A1EK-01A	0 years, female, white, stage:Stage IVB, dead, 558 days	66.8
TCGA-RC-A6M5-01A	0 years, female, white, stage:Stage IVA, alive, 15 days	65.9
TCGA-RC-A6M6-01A	0 years, male, white, stage:Stage II, alive, 9 days	65.8
TCGA-2Y-A9GW-01A	0 years, male, white, stage:Stage I, dead, 1271 days	65.6
TCGA-FV-A2QQ-01A	0 years, male, white, stage:Stage I, alive, 729 days	65.1
TCGA-WX-AA47-01A	0 years, female, white, stage:Stage IIIA, dead, 556 days	65.0
TCGA-BC-A217-01A	0 years, female, white, stage:Stage II, dead, 1397 days	63.1
TCGA-DD-A39V-01A	0 years, male, white, stage:Stage II, dead, 643 days	62.6
TCGA-CC-A5UD-01A	0 years, male, asian, stage:Stage IIIA, dead, 304 days	62.5
TCGA-DD-AADP-01A	0 years, male, asian, stage:Stage I, alive, 458 days	61.9
TCGA-DD-A39X-01A	0 years, female, white, stage:Stage I, dead, 1694 days	61.5
TCGA-CC-5262-01A	0 years, male, asian, stage:Stage IIIC, dead, 103 days	59.2
TCGA-ED-A627-01A	0 years, male, white, stage:Stage I, alive, 423 days	58.9
TCGA-ED-A66Y-01A	0 years, female, asian, stage:Stage IIIA, dead, 296 days	58.5
TCGA-DD-AAVU-01A	0 years, male, asian, stage:Stage II, alive, 2202 days	56.9
TCGA-DD-AAEE-01A	0 years, male, asian, stage:Stage I, alive, 810 days	56.5
TCGA-CC-A8HU-01A	0 years, female, asian, stage:Stage IIIA, dead, 344 days	54.7
TCGA-BD-A3EP-01A	0 years, female, black or african american, stage:Stage I, alive, 409 days	54.1
TCGA-CC-A7IG-01A	0 years, male, asian, stage:Stage II, dead, 299 days	53.7
TCGA-ZS-A9CG-01A	0 years, male, white, stage:Stage II, alive, 341 days	53.5
TCGA-BC-A110-01A	0 years, female, black or african american, stage:'--, dead, 2116 days	52.4
TCGA-DD-AAD3-01A	0 years, male, asian, stage:Stage I, alive, 1295 days	51.7
TCGA-DD-A4NJ-01A	0 years, female, white, stage:Stage II, alive, 928 days	51.3
TCGA-EP-A2KA-01A	0 years, female, white, stage:Stage IIIA, dead, 627 days	51.2
TCGA-2Y-A9H8-01A	0 years, female, white, stage:'--, dead, 633 days	50.6
TCGA-5C-A9VH-01A	0 years, male, white, stage:Stage I, alive, 322 days	50.4
TCGA-DD-AAVZ-01A	0 years, male, asian, stage:Stage I, alive, 1900 days	49.6
TCGA-DD-A4NA-01A	0 years, female, white, stage:Stage IIIC, alive, 1008 days	49.1
TCGA-BC-A69H-01A	0 years, male, white, stage:Stage II, alive, 444 days	48.9
TCGA-CC-A7IL-01A	0 years, male, asian, stage:Stage IIIA, dead, 278 days	47.3
TCGA-YA-A8S7-01A	0 years, male, white, stage:Stage IIIA, dead, 412 days	47.0
TCGA-UB-A7ME-01A	0 years, male, asian, stage:Stage I, alive, 486 days	46.2
TCGA-DD-AACN-01A	0 years, male, asian, stage:Stage I, alive, 1302 days	46.1
TCGA-2Y-A9HA-01A	0 years, male, white, stage:Stage II, dead, 36 days	45.4
TCGA-G3-AAUZ-01A	0 years, male, stage:Stage I, alive, 480 days	45.3
TCGA-DD-AACO-01A	0 years, male, asian, stage:Stage I, alive, 1876 days	44.1
TCGA-UB-A7MC-01A	0 years, male, white, stage:Stage IIIA, alive, 500 days	43.7
TCGA-BW-A5NO-01A	0 years, male, black or african american, stage:Stage IIIA, alive, 20 days	43.7
TCGA-CC-A123-01A	0 years, female, asian, stage:Stage IIIA, alive, 219 days	43.5
TCGA-RC-A7S9-01A	0 years, female, asian, stage:Stage I, alive, 640 days	43.2
TCGA-DD-AAE6-01A	0 years, female, asian, stage:Stage I, alive, 141 days	41.7
TCGA-5R-AA1D-01A	0 years, female, white, stage:Stage IIIA, alive, 449 days	41.3
TCGA-DD-A11D-01A	0 years, female, white, stage:Stage I, dead, 1560 days	40.8
TCGA-CC-5260-01A	0 years, female, asian, stage:Stage IIIC, dead, 87 days	40.8
TCGA-DD-AADL-01A	0 years, male, asian, stage:Stage I, alive, 636 days	40.0
TCGA-G3-A25T-01A	0 years, female, white, stage:Stage IIIA, alive, 1553 days	40.0
TCGA-DD-A4NV-01A	0 years, male, white, stage:Stage IIIA, alive, 2398 days	39.5
TCGA-2Y-A9H0-01A	0 years, male, white, stage:Stage IIIA, alive, 3675 days	39.4
TCGA-DD-AADY-01A	0 years, female, asian, stage:Stage I, alive, 555 days	39.1
TCGA-ED-A82E-01A	0 years, female, asian, stage:Stage IIIA, alive, 408 days	38.4
TCGA-DD-A4ND-01A	0 years, female, white, stage:Stage I, alive, 2746 days	37.8
TCGA-G3-A25V-01A	0 years, male, white, stage:Stage I, alive, 860 days	37.7
TCGA-K7-AAU7-01A	0 years, male, white, stage:Stage II, alive, 359 days	37.2
TCGA-CC-A9FW-01A	0 years, male, asian, stage:Stage IIIA, alive, 248 days	37.2
TCGA-K7-A5RF-01A	0 years, male, white, stage:Stage I, alive, 631 days	36.9
TCGA-CC-5263-01A	0 years, male, asian, stage:Stage IIIA, dead, 129 days	36.9
TCGA-DD-AADD-01A	0 years, male, asian, stage:Stage I, alive, 1231 days	36.8
TCGA-DD-A1EI-01A	0 years, male, asian, stage:Stage I, alive, 183 days	36.7
TCGA-DD-AAVR-01A	0 years, male, asian, stage:Stage I, alive, 2513 days	36.3
TCGA-BD-A3ER-01A	0 years, male, white, stage:Stage II, alive, 1115 days	36.1
TCGA-ED-A7PY-01A	0 years, female, asian, stage:Stage II, alive, 390 days	36.0
TCGA-CC-A9FS-01A	0 years, male, asian, stage:Stage II, alive, 211 days	34.5
TCGA-BC-A3KG-01A	0 years, female, white, stage:Stage II, alive, 680 days	34.2
TCGA-DD-AAE1-01A	0 years, male, asian, stage:Stage I, alive, 552 days	33.5
TCGA-DD-A4NL-01A	0 years, male, white, stage:Stage I, alive, 1711 days	33.3
TCGA-HP-A5N0-01A	0 years, female, stage:'--, dead, 752 days	33.2
TCGA-DD-AADW-01A	0 years, male, asian, stage:Stage I, alive, 587 days	33.0
TCGA-DD-AACD-01A	0 years, male, asian, stage:Stage I, dead, 381 days	32.8
TCGA-ED-A4XI-01A	0 years, male, asian, stage:Stage II, alive, 819 days	32.8
TCGA-ED-A7XO-01A	0 years, male, asian, stage:Stage IIIA, alive, 427 days	32.6
TCGA-BC-A10U-01A	0 years, male, white, stage:'--, dead, 837 days	31.5
TCGA-DD-AACU-01A	0 years, male, asian, stage:Stage I, alive, 1567 days	31.5
TCGA-RC-A7SB-01A	0 years, male, asian, stage:Stage II, alive, 588 days	29.9
TCGA-DD-AAEA-01A	0 years, male, asian, stage:Stage I, alive, 575 days	29.9
TCGA-2Y-A9H3-01A	0 years, male, white, stage:Stage II, alive, 1516 days	29.8
TCGA-2Y-A9GS-01A	0 years, male, white, stage:'--, dead, 724 days	28.0
TCGA-FV-A3R3-01A	0 years, female, white, stage:Stage I, dead, 366 days	27.6
TCGA-DD-A1ED-01A	0 years, male, white, stage:Stage I, alive, 2301 days	27.5
TCGA-2Y-A9H6-01A	0 years, female, white, stage:Stage I, alive, 357 days	27.5
TCGA-DD-AACC-01A	0 years, male, asian, stage:Stage I, dead, 1685 days	27.2
TCGA-DD-AACY-01A	0 years, male, asian, stage:Stage I, alive, 1450 days	27.1
TCGA-CC-A5UC-01A	0 years, male, asian, stage:Stage IIIA, dead, 347 days	26.5
TCGA-UB-AA0V-01A	0 years, female, white, stage:Stage I, alive, 314 days	25.9
TCGA-MI-A75G-01A	0 years, male, white, stage:Stage II, alive, 698 days	25.8
TCGA-KR-A7K8-01A	0 years, male, stage:Stage I, alive, 906 days	24.8
TCGA-DD-AAVS-01A	0 years, male, asian, stage:Stage I, alive, 1823 days	24.8
TCGA-DD-A4NN-01A	0 years, female, white, stage:Stage I, dead, 899 days	24.3
TCGA-MI-A75E-01A	0 years, male, white, stage:Stage IIIC, alive, 507 days	24.3
TCGA-CC-A7IF-01A	0 years, male, asian, stage:Stage IIIA, dead, 649 days	23.9
TCGA-DD-AAE4-01A	0 years, female, asian, stage:Stage I, alive, 608 days	23.9
TCGA-ZS-A9CD-01A	0 years, male, white, stage:Stage II, dead, 1386 days	23.8
TCGA-PD-A5DF-01A	0 years, female, white, stage:Stage IIIB, dead, 639 days	23.6
TCGA-DD-A73G-01A	0 years, female, white, stage:Stage I, alive, 3478 days	23.6
TCGA-DD-AACQ-01A	0 years, male, asian, stage:Stage II, dead, 432 days	22.3
TCGA-K7-A6G5-01A	0 years, male, white, stage:Stage I, alive, 512 days	22.2
TCGA-UB-AA0U-01A	0 years, male, white, stage:Stage II, alive, 327 days	21.8
TCGA-XR-A8TG-01A	0 years, male, white, stage:Stage I, alive, 898 days	21.8
TCGA-DD-AAC8-01A	0 years, male, asian, stage:Stage I, dead, 16 days	21.5
TCGA-DD-A1EH-01A	0 years, male, white, stage:Stage III, alive, 1495 days	21.4
TCGA-5R-AAAM-01A	0 years, female, white, stage:Stage II, dead, 46 days	21.3
TCGA-G3-AAV3-01A	0 years, female, white, stage:Stage II, alive, 412 days	21.1
TCGA-DD-AAD6-01A	0 years, male, asian, stage:Stage IIIA, alive, 672 days	21.0
TCGA-G3-AAV6-01A	0 years, female, white, stage:Stage IIIA, dead, 65 days	20.8
TCGA-LG-A6GG-01A	0 years, female, white, stage:Stage II, alive, 387 days	20.8
TCGA-LG-A9QC-01A	0 years, male, white, stage:Stage I, alive, 425 days	20.8
TCGA-DD-AACB-01A	0 years, female, asian, stage:Stage I, alive, 2324 days	20.5
TCGA-KR-A7K2-01A	0 years, male, white, stage:Stage I, alive, 829 days	20.5
TCGA-G3-A5SJ-01A	0 years, male, white, stage:Stage I, alive, 698 days	20.3
TCGA-BC-A10X-01A	0 years, female, white, stage:Stage IIIA, dead, 770 days	20.3
TCGA-2Y-A9H5-01A	0 years, female, white, stage:Stage I, dead, 555 days	19.7
TCGA-BC-A69I-01A	0 years, male, white, stage:Stage I, alive, 387 days	19.0
TCGA-BC-A10S-01A	0 years, male, white, stage:'--, dead, 1423 days	18.7
TCGA-RG-A7D4-01A	0 years, male, black or african american, stage:Stage II, alive, 1098 days	18.6
TCGA-3K-AAZ8-01A	0 years, male, black or african american, stage:Stage IIIB, alive, 396 days	18.0
TCGA-4R-AA8I-01A	0 years, male, white, stage:Stage II, dead, 262 days	17.9
TCGA-DD-A73F-01A	0 years, female, white, stage:Stage I, alive, 1085 days	17.8
TCGA-DD-AAEI-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	17.6
TCGA-XR-A8TE-01A	0 years, male, white, stage:Stage IIIA, alive, 925 days	17.3
TCGA-5C-A9VG-01A	0 years, male, white, stage:Stage II, alive, 328 days	16.9
TCGA-G3-A25Z-01A	0 years, male, asian, stage:Stage I, alive, 655 days	16.7
TCGA-DD-A115-01A	0 years, male, white, stage:Stage IIIA, dead, 2542 days	16.6
TCGA-BC-A10Y-01A	0 years, male, white, stage:'--, dead, 711 days	16.5
TCGA-DD-A4NP-01A	0 years, male, white, stage:Stage I, alive, 3308 days	16.5
TCGA-CC-A7IK-01A	0 years, male, asian, stage:Stage IIIA, dead, 262 days	16.4
TCGA-DD-AACV-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	16.3
TCGA-DD-A3A5-01A	0 years, female, white, stage:Stage III, dead, 3125 days	16.3
TCGA-ZP-A9D1-01A	0 years, female, white, stage:'--, alive, 21 days	16.1
TCGA-FV-A4ZQ-01A	0 years, male, white, stage:Stage I, alive, 12 days	15.8
TCGA-G3-A3CI-01A	0 years, male, white, stage:Stage I, alive, 180 days	15.7
TCGA-BC-A10T-01A	0 years, male, white, stage:'--, dead, 837 days	15.6
TCGA-DD-AAE7-01A	0 years, male, asian, stage:Stage I, alive, 644 days	15.3
TCGA-DD-A11B-01A	0 years, male, white, stage:Stage I, dead, 14 days	15.1
TCGA-DD-A3A8-01A	0 years, male, white, stage:Stage II, dead, 11 days	14.6
TCGA-DD-A4NG-01A	0 years, male, white, stage:Stage IIIA, dead, 802 days	14.6
TCGA-FV-A496-01A	0 years, female, white, stage:Stage I, alive, 10 days	14.3
TCGA-EP-A2KC-01A	0 years, male, black or african american, stage:Stage I, dead, 19 days	14.2
TCGA-DD-AADV-01A	0 years, male, asian, stage:Stage I, alive, 574 days	14.1
TCGA-2Y-A9GT-01A	0 years, male, white, stage:Stage I, dead, 1624 days	14.1
TCGA-KR-A7K0-01A	0 years, male, white, stage:Stage I, dead, 65 days	14.1
TCGA-ZP-A9CY-01A	0 years, female, white, stage:'--, alive, 782 days	14.0
TCGA-DD-AAEK-01A	0 years, male, asian, stage:Stage II, alive, 1067 days	13.6
TCGA-DD-AAEH-01A	0 years, male, asian, stage:Stage I, alive, 784 days	13.4
TCGA-DD-AADC-01A	0 years, male, asian, stage:Stage I, dead, 425 days	13.0
TCGA-BD-A2L6-01A	0 years, male, white, stage:'--, alive, 1363 days	12.6
TCGA-DD-A4NQ-01A	0 years, male, white, stage:Stage II, dead, 373 days	12.6
TCGA-DD-A11C-01A	0 years, male, white, stage:Stage I, alive, 662 days	12.4
TCGA-DD-AACP-01A	0 years, male, asian, stage:Stage I, alive, 415 days	12.4
TCGA-FV-A2QR-01A	0 years, male, white, stage:Stage I, dead, 581 days	12.4
TCGA-G3-A3CK-01A	0 years, male, asian, stage:Stage I, alive, 585 days	12.3
TCGA-2Y-A9GV-01A	0 years, female, white, stage:Stage I, dead, 2532 days	12.3
TCGA-BC-A10Q-01A	0 years, female, white, stage:'--, dead, 1135 days	12.1
TCGA-WX-AA46-01A	0 years, male, white, stage:Stage II, alive, 756 days	12.0
TCGA-BC-A3KF-01A	0 years, female, white, stage:Stage I, alive, 8 days	11.6
TCGA-DD-A118-01A	0 years, female, white, stage:Stage II, alive, 3437 days	11.2
TCGA-UB-A7MF-01A	0 years, male, white, stage:Stage IIIA, dead, 214 days	11.1
TCGA-NI-A8LF-01A	0 years, male, white, stage:Stage I, alive, 799 days	11.1
TCGA-DD-A1EA-01A	0 years, male, asian, stage:Stage II, alive, 2415 days	11.0
TCGA-WQ-AB4B-01A	0 years, male, white, stage:Stage II, alive, 395 days	10.9
TCGA-DD-AAE3-01A	0 years, male, asian, stage:Stage I, alive, 566 days	10.8
TCGA-G3-A5SK-01A	0 years, male, white, stage:Stage I, alive, 744 days	10.6
TCGA-DD-A1EF-01A	0 years, female, white, stage:Stage I, dead, 394 days	10.6
TCGA-G3-A7M5-01A	0 years, male, asian, stage:Stage I, alive, 447 days	10.5
TCGA-DD-AADA-01A	0 years, female, asian, stage:Stage I, alive, 1233 days	10.5
TCGA-G3-AAV0-01A	0 years, male, asian, stage:Stage I, alive, 476 days	10.5
TCGA-2Y-A9HB-01A	0 years, male, stage:Stage I, alive, 260 days	10.5
TCGA-ZP-A9CV-01A	0 years, male, white, stage:'--, dead, 1088 days	10.3
TCGA-LG-A9QD-01A	0 years, male, white, stage:Stage IIIA, alive, 366 days	10.2
TCGA-MI-A75H-01A	0 years, male, white, stage:'--, alive, 747 days	10.1
TCGA-G3-A5SI-01A	0 years, male, asian, stage:Stage II, dead, 768 days	10.0
TCGA-G3-A7M8-01A	0 years, male, asian, stage:Stage I, alive, 430 days	9.7
TCGA-G3-AAV2-01A	0 years, male, white, stage:Stage I, alive, 372 days	9.6
TCGA-DD-AAE2-01A	0 years, male, asian, stage:Stage I, alive, 638 days	9.5
TCGA-G3-A3CJ-01A	0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days	9.5
TCGA-CC-A7IH-01A	0 years, male, asian, stage:Stage IIIA, alive, 365 days	9.4
TCGA-XR-A8TC-01A	0 years, female, white, stage:Stage I, alive, 1339 days	9.3
TCGA-DD-AADF-01A	0 years, female, asian, stage:Stage I, dead, 115 days	9.2
TCGA-DD-AAD8-01A	0 years, female, asian, stage:Stage I, alive, 1219 days	8.9
TCGA-ES-A2HS-01A	0 years, male, white, stage:Stage I, dead, 688 days	8.8
TCGA-DD-A4NF-01A	0 years, male, white, stage:Stage I, alive, 942 days	8.7
TCGA-DD-AADS-01A	0 years, male, asian, stage:Stage I, alive, 474 days	8.6
TCGA-G3-AAV1-01A	0 years, male, asian, stage:Stage IIIC, dead, 359 days	8.6
TCGA-MI-A75C-01A	0 years, male, white, stage:Stage I, alive, 291 days	8.5
TCGA-EP-A2KB-01A	0 years, female, white, stage:Stage I, dead, 596 days	8.3
TCGA-DD-AAEB-01A	0 years, male, asian, stage:Stage I, alive, 478 days	8.2
TCGA-G3-A7M7-01A	0 years, male, white, stage:Stage I, alive, 361 days	8.1
TCGA-CC-A3MB-01A	0 years, male, asian, stage:Stage IIIA, dead, 315 days	8.0
TCGA-BC-A10Z-01A	0 years, female, white, stage:Stage I, dead, 34 days	7.9
TCGA-ED-A8O5-01A	0 years, female, asian, stage:Stage IIIA, alive, 406 days	7.6
TCGA-DD-A73B-01A	0 years, female, white, stage:Stage I, dead, 283 days	7.4
TCGA-DD-A73C-01A	0 years, female, white, stage:Stage IIIA, alive, 701 days	7.4
TCGA-ZS-A9CF-01A	0 years, male, white, stage:Stage II, alive, 2412 days	7.2
TCGA-2Y-A9H9-01A	0 years, male, white, stage:Stage I, alive, 697 days	7.1
TCGA-DD-A4NI-01A	0 years, male, white, stage:Stage II, alive, 816 days	7.1
TCGA-DD-AADG-01A	0 years, male, asian, stage:Stage IIIA, alive, 1145 days	7.1
TCGA-DD-AACX-01A	0 years, male, asian, stage:Stage II, alive, 170 days	6.9
TCGA-NI-A4U2-01A	0 years, male, white, stage:Stage IIIA, dead, 1791 days	6.9
TCGA-DD-AACA-01A	0 years, male, asian, stage:Stage I, alive, 2301 days	6.6
TCGA-DD-AADQ-01A	0 years, male, asian, stage:Stage II, alive, 436 days	6.6
TCGA-DD-AACF-01A	0 years, male, asian, stage:Stage I, dead, 365 days	6.6
TCGA-DD-AACE-01A	0 years, male, asian, stage:Stage I, alive, 2184 days	6.5
TCGA-DD-AADJ-01A	0 years, female, asian, stage:Stage I, alive, 1066 days	6.4
TCGA-MR-A520-01A	0 years, male, white, stage:Stage I, alive, 229 days	6.2
TCGA-DD-A4NE-01A	0 years, female, white, stage:Stage IIIA, dead, 660 days	6.2
TCGA-FV-A23B-01A	0 years, female, white, stage:Stage II, dead, 1852 days	6.1
TCGA-DD-AAW2-01A	0 years, male, asian, stage:Stage I, alive, 1855 days	6.0
TCGA-DD-AADR-01A	0 years, male, asian, stage:Stage I, alive, 2028 days	6.0
TCGA-DD-A73E-01A	0 years, male, white, stage:Stage I, alive, 44 days	6.0
TCGA-DD-AAVY-01A	0 years, male, asian, stage:Stage IIIA, alive, 1970 days	5.9
TCGA-DD-AACK-01A	0 years, male, asian, stage:Stage I, alive, 9 days	5.9
TCGA-DD-A4NK-01A	0 years, female, white, stage:Stage IIIA, dead, 1210 days	5.7
TCGA-DD-A73A-01A	0 years, male, white, stage:Stage I, alive, 728 days	5.5
TCGA-ZP-A9D0-01A	0 years, female, black or african american, stage:'--, alive, 1091 days	5.5
TCGA-G3-AAV5-01A	0 years, male, white, stage:Stage II, alive, 354 days	5.4
TCGA-G3-A5SL-01A	0 years, male, white, stage:Stage II, alive, 621 days	5.3
TCGA-DD-AAW1-01A	0 years, male, asian, stage:Stage IIIA, alive, 1989 days	5.1
TCGA-DD-AAVX-01A	0 years, male, asian, stage:Stage II, alive, 1718 days	5.0
TCGA-2Y-A9H7-01A	0 years, female, white, stage:Stage I, alive, 1168 days	4.9
TCGA-G3-AAV4-01A	0 years, female, white, stage:Stage I, dead, 27 days	4.8
TCGA-EP-A26S-01A	0 years, male, white, stage:Stage I, alive, 608 days	4.7
TCGA-DD-A1EB-01A	0 years, female, stage:Stage I, alive, 2017 days	4.7
TCGA-DD-A1EE-01A	0 years, male, white, stage:Stage IIIA, dead, 349 days	4.7
TCGA-DD-AADU-01A	0 years, male, asian, stage:Stage II, alive, 554 days	4.6
TCGA-BC-A8YO-01A	0 years, female, white, stage:Stage IIIC, alive, 562 days	4.5
TCGA-2Y-A9GZ-01A	0 years, female, white, stage:Stage II, dead, 848 days	4.4
TCGA-QA-A7B7-01A	0 years, male, black or african american, stage:Stage II, alive, 94 days	4.3
TCGA-DD-AACW-01A	0 years, male, asian, stage:Stage I, alive, 1424 days	4.2
TCGA-5R-AA1C-01A	0 years, male, white, stage:Stage II, alive, 520 days	4.2
TCGA-DD-A3A4-01A	0 years, male, white, stage:Stage IIIA, dead, 612 days	4.1
TCGA-EP-A12J-01A	0 years, male, black or african american, stage:Stage I, alive, 570 days	3.8
TCGA-DD-AAW3-01A	0 years, male, asian, stage:Stage I, alive, 1633 days	3.6
TCGA-DD-A39W-01A	0 years, female, white, stage:Stage III, dead, 827 days	3.5
TCGA-DD-A3A2-01A	0 years, female, white, stage:Stage I, dead, 2131 days	3.4
TCGA-ZS-A9CE-01A	0 years, female, white, stage:Stage II, alive, 1241 days	3.3
TCGA-G3-A25U-01A	0 years, female, asian, stage:Stage I, alive, 1636 days	3.2
TCGA-2Y-A9GU-01A	0 years, female, white, stage:Stage I, alive, 1939 days	3.1
TCGA-XR-A8TF-01A	0 years, male, white, stage:Stage I, dead, 693 days	3.0
TCGA-G3-A6UC-01A	0 years, male, white, stage:Stage IIIB, alive, 671 days	3.0
TCGA-RC-A6M4-01A	0 years, female, white, stage:Stage IIIA, alive, 22 days	3.0
TCGA-DD-A39Z-01A	0 years, female, stage:Stage II, dead, 601 days	3.0
TCGA-ZP-A9D4-01A	0 years, female, white, stage:'--, alive, 395 days	2.5
TCGA-DD-A73D-01A	0 years, female, white, stage:Stage II, alive, 693 days	2.4
TCGA-DD-AAE9-01A	0 years, male, asian, stage:Stage I, alive, 722 days	2.0
TCGA-DD-AAD0-01A	0 years, female, asian, stage:Stage I, alive, 137 days	1.9
TCGA-BC-A5W4-01A	0 years, male, white, stage:Stage IIIA, dead, 547 days	1.6
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter plotⁱ The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red. The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off". Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation. Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient. & Survival analysisⁱ Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.

LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)

Number of samples

330

Samples

Sample ID	Sample type	nRPX
937	Tumor	2.1
525	Tumor	1.9
727	Tumor	1.9
395	Tumor	1.9
545	Tumor	1.7
195	Tumor	1.6
925	Tumor	1.6
123	Tumor	1.4
211	Tumor	1.4
477	Tumor	1.3
185	Tumor	1.2
573	Tumor	1.2
697	Tumor	1.0
721	Tumor	1.0
465	Tumor	1.0
563	Tumor	1.0
724	Normal	1.0
963	Tumor	1.0
351	Tumor	0.9
427	Tumor	0.9
387	Tumor	0.9
145	Tumor	0.9
367	Tumor	0.9
445	Tumor	0.9
223	Tumor	0.8
221	Tumor	0.8
231	Tumor	0.8
467	Tumor	0.8
341	Tumor	0.7
536	Normal	0.7
343	Tumor	0.7
463	Tumor	0.7
444	Normal	0.7
857	Tumor	0.6
665	Tumor	0.6
331	Tumor	0.5
297	Tumor	0.5
192	Normal	0.5
917	Tumor	0.5
483	Tumor	0.5
975	Tumor	0.5
823	Tumor	0.5
817	Tumor	0.4
913	Tumor	0.4
487	Tumor	0.4
188	Normal	0.4
135	Tumor	0.4
498	Normal	0.4
557	Tumor	0.4
455	Tumor	0.4
1021	Tumor	0.4
883	Tumor	0.4
393	Tumor	0.4
923	Tumor	0.4
814	Normal	0.4
357	Tumor	0.3
636	Normal	0.3
492	Normal	0.3
943	Tumor	0.3
478	Normal	0.3
852	Normal	0.3
434	Normal	0.3
685	Tumor	0.3
881	Tumor	0.3
191	Tumor	0.3
537	Tumor	0.3
311	Tumor	0.2
394	Normal	0.2
217	Tumor	0.2
916	Normal	0.2
146	Normal	0.2
661	Tumor	0.2
388	Normal	0.2
615	Tumor	0.2
447	Tumor	0.2
268	Normal	0.2
466	Normal	0.1
951	Tumor	0.1
452	Normal	0.1
126	Normal	0.1
533	Tumor	0.1
421	Tumor	0.1
616	Normal	0.1
461	Tumor	0.1
468	Normal	0.1
386	Normal	0.1
671	Tumor	0.1
383	Tumor	0.0
161	Tumor	0.0
647	Tumor	0.0
813	Tumor	0.0
384	Normal	0.0
224	Normal	0.0
1025	Tumor	0.0
978	Normal	0.0
213	Tumor	0.0
628	Normal	0.0
956	Normal	0.0
471	Tumor	0.0
982	Normal	0.0
113	Tumor	0.0
464	Normal	0.0
396	Normal	0.0
914	Normal	-0.1
353	Tumor	-0.1
362	Normal	-0.1
924	Normal	-0.1
538	Normal	-0.1
1031	Tumor	-0.1
524	Normal	-0.1
218	Normal	-0.1
392	Normal	-0.1
271	Tumor	-0.1
385	Tumor	-0.1
214	Normal	-0.1
918	Normal	-0.1
1044	Normal	-0.1
413	Tumor	-0.1
415	Tumor	-0.1
187	Tumor	-0.1
344	Normal	-0.1
1013	Tumor	-0.1
358	Normal	-0.1
818	Normal	-0.1
332	Normal	-0.1
816	Normal	-0.1
284	Normal	-0.1
366	Normal	-0.1
312	Normal	-0.1
984	Normal	-0.1
456	Normal	-0.2
262	Normal	-0.2
698	Normal	-0.2
546	Normal	-0.2
352	Normal	-0.2
874	Normal	-0.2
1014	Normal	-0.2
124	Normal	-0.2
642	Normal	-0.2
922	Normal	-0.2
672	Normal	-0.2
141	Tumor	-0.2
196	Normal	-0.2
354	Normal	-0.2
391	Tumor	-0.2
136	Normal	-0.2
958	Normal	-0.2
172	Normal	-0.2
491	Tumor	-0.2
858	Normal	-0.2
283	Tumor	-0.2
954	Normal	-0.2
368	Normal	-0.2
138	Normal	-0.2
162	Normal	-0.2
313	Tumor	-0.2
355	Tumor	-0.2
433	Tumor	-0.2
926	Normal	-0.2
127	Tumor	-0.2
716	Normal	-0.3
884	Normal	-0.3
446	Normal	-0.3
1045	Tumor	-0.3
1016	Normal	-0.3
142	Normal	-0.3
722	Normal	-0.3
966	Normal	-0.3
375	Tumor	-0.3
342	Normal	-0.3
314	Normal	-0.3
976	Normal	-0.3
186	Normal	-0.3
662	Normal	-0.3
663	Tumor	-0.3
527	Tumor	-0.3
516	Normal	-0.3
617	Tumor	-0.3
824	Normal	-0.3
666	Normal	-0.3
863	Tumor	-0.3
222	Normal	-0.3
365	Tumor	-0.3
1032	Normal	-0.3
494	Normal	-0.3
535	Tumor	-0.3
618	Normal	-0.3
574	Normal	-0.3
514	Normal	-0.3
416	Normal	-0.3
137	Tumor	-0.3
376	Normal	-0.3
462	Normal	-0.3
278	Normal	-0.3
785	Tumor	-0.3
744	Normal	-0.4
125	Tumor	-0.4
148	Normal	-0.4
132	Normal	-0.4
627	Tumor	-0.4
756	Normal	-0.4
1022	Normal	-0.4
474	Normal	-0.4
878	Normal	-0.4
448	Normal	-0.4
286	Normal	-0.4
882	Normal	-0.4
171	Tumor	-0.4
472	Normal	-0.4
968	Normal	-0.4
482	Normal	-0.4
277	Tumor	-0.4
1028	Normal	-0.4
443	Tumor	-0.4
432	Normal	-0.4
228	Normal	-0.4
558	Normal	-0.4
921	Tumor	-0.4
488	Normal	-0.4
728	Normal	-0.4
212	Normal	-0.5
983	Tumor	-0.5
364	Normal	-0.5
361	Tumor	-0.5
723	Tumor	-0.5
965	Tumor	-0.5
868	Normal	-0.5
412	Normal	-0.5
713	Tumor	-0.5
424	Normal	-0.5
686	Normal	-0.5
743	Tumor	-0.5
422	Normal	-0.5
1015	Tumor	-0.5
473	Tumor	-0.5
1046	Normal	-0.5
411	Tumor	-0.5
572	Normal	-0.5
534	Normal	-0.5
912	Normal	-0.5
414	Normal	-0.5
778	Normal	-0.5
641	Tumor	-0.5
568	Normal	-0.5
493	Tumor	-0.5
147	Tumor	-0.5
696	Normal	-0.5
426	Normal	-0.5
864	Normal	-0.5
981	Tumor	-0.5
114	Normal	-0.5
567	Tumor	-0.5
517	Tumor	-0.5
1026	Normal	-0.6
272	Normal	-0.6
526	Normal	-0.6
648	Normal	-0.6
528	Normal	-0.6
755	Tumor	-0.6
664	Normal	-0.6
944	Normal	-0.6
356	Normal	-0.6
298	Normal	-0.6
564	Normal	-0.6
484	Normal	-0.6
128	Normal	-0.6
428	Normal	-0.6
1042	Normal	-0.6
964	Normal	-0.6
714	Normal	-0.6
327	Tumor	-0.6
111	Normal	-0.6
451	Tumor	-0.7
866	Normal	-0.7
952	Normal	-0.7
232	Normal	-0.7
328	Normal	-0.7
977	Tumor	-0.7
786	Normal	-0.7
738	Normal	-0.7
877	Tumor	-0.7
131	Tumor	-0.7
938	Normal	-0.7
423	Tumor	-0.8
742	Normal	-0.8
363	Tumor	-0.8
815	Tumor	-0.8
867	Tumor	-0.8
862	Normal	-0.8
481	Tumor	-0.8
953	Tumor	-0.8
285	Tumor	-0.8
436	Normal	-0.8
737	Tumor	-0.8
861	Tumor	-0.8
955	Tumor	-0.9
746	Normal	-0.9
227	Tumor	-0.9
518	Normal	-0.9
851	Tumor	-0.9
957	Tumor	-0.9
261	Tumor	-0.9
553	Tumor	-0.9
1043	Tumor	-0.9
258	Normal	-1.0
112	Tumor	-1.0
715	Tumor	-1.0
967	Tumor	-1.0
497	Tumor	-1.0
425	Tumor	-1.0
915	Tumor	-1.0
267	Tumor	-1.0
431	Tumor	-1.1
435	Tumor	-1.1
741	Tumor	-1.1
513	Tumor	-1.2
695	Tumor	-1.2
777	Tumor	-1.2
571	Tumor	-1.3
257	Tumor	-1.3
1027	Tumor	-1.3
554	Normal	-1.3
911	Tumor	-1.3
523	Tumor	-1.3
1041	Tumor	-1.4
515	Tumor	-1.4
873	Tumor	-1.4
635	Tumor	-1.4
745	Tumor	-1.5
865	Tumor	-1.6
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LIVER CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA019601	Antibody CAB008667
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Carcinoma, Hepatocellular, NOS
Cholangiocarcinoma