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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GK is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
202.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
188.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
141.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
111.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
98.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
92.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
83.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
76.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
75.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
64.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
60.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
56.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
55.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
53.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
53.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
47.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
46.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
46.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
44.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
44.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
44.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
44.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
43.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
43.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
42.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
42.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
41.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
38.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
38.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
36.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
36.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
36.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
35.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
34.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
34.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
33.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
31.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
29.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
28.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
27.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
25.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
25.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
24.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
21.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
20.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GK is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.7
Number of samples
231
Samples
Sample
Description
TPM
DO23549
0 years, male, NA, stage:3, alive, 990 days
95.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
91.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
80.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
62.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
62.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
59.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
56.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
55.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
49.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
49.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
41.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
29.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
28.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
28.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
22.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
18.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
697
Tumor
1.6
557
Tumor
1.6
713
Tumor
1.5
395
Tumor
1.2
724
Normal
1.2
467
Tumor
1.2
217
Tumor
0.9
981
Tumor
0.9
742
Normal
0.8
671
Tumor
0.8
861
Tumor
0.8
914
Normal
0.8
1021
Tumor
0.8
123
Tumor
0.8
817
Tumor
0.7
778
Normal
0.7
786
Normal
0.7
937
Tumor
0.7
951
Tumor
0.6
924
Normal
0.6
695
Tumor
0.6
111
Normal
0.6
851
Tumor
0.6
1028
Normal
0.6
258
Normal
0.6
114
Normal
0.6
462
Normal
0.5
227
Tumor
0.5
1044
Normal
0.5
571
Tumor
0.5
364
Normal
0.5
618
Normal
0.5
416
Normal
0.5
553
Tumor
0.5
436
Normal
0.5
218
Normal
0.5
698
Normal
0.5
344
Normal
0.5
662
Normal
0.5
723
Tumor
0.5
363
Tumor
0.4
665
Tumor
0.4
1015
Tumor
0.4
113
Tumor
0.4
636
Normal
0.4
642
Normal
0.4
818
Normal
0.4
411
Tumor
0.4
446
Normal
0.4
874
Normal
0.4
414
Normal
0.4
984
Normal
0.4
756
Normal
0.4
1022
Normal
0.4
884
Normal
0.4
328
Normal
0.4
721
Tumor
0.4
722
Normal
0.4
426
Normal
0.4
261
Tumor
0.4
635
Tumor
0.4
386
Normal
0.4
568
Normal
0.3
746
Normal
0.3
186
Normal
0.3
212
Normal
0.3
126
Normal
0.3
452
Normal
0.3
394
Normal
0.3
862
Normal
0.3
396
Normal
0.3
967
Tumor
0.3
428
Normal
0.3
824
Normal
0.3
918
Normal
0.3
816
Normal
0.3
664
Normal
0.3
1031
Tumor
0.3
342
Normal
0.3
456
Normal
0.3
286
Normal
0.3
312
Normal
0.3
362
Normal
0.3
738
Normal
0.3
214
Normal
0.3
468
Normal
0.3
1046
Normal
0.3
358
Normal
0.3
128
Normal
0.3
868
Normal
0.3
666
Normal
0.3
952
Normal
0.3
132
Normal
0.3
866
Normal
0.3
526
Normal
0.3
482
Normal
0.3
546
Normal
0.3
628
Normal
0.3
1026
Normal
0.3
1016
Normal
0.3
356
Normal
0.3
272
Normal
0.3
262
Normal
0.2
278
Normal
0.2
434
Normal
0.2
228
Normal
0.2
728
Normal
0.2
327
Tumor
0.2
716
Normal
0.2
528
Normal
0.2
196
Normal
0.2
424
Normal
0.2
648
Normal
0.2
353
Tumor
0.2
755
Tumor
0.2
124
Normal
0.2
976
Normal
0.2
538
Normal
0.2
222
Normal
0.2
268
Normal
0.2
388
Normal
0.2
923
Tumor
0.2
422
Normal
0.2
1042
Normal
0.2
916
Normal
0.2
686
Normal
0.2
472
Normal
0.2
146
Normal
0.2
982
Normal
0.2
926
Normal
0.2
696
Normal
0.2
451
Tumor
0.2
465
Tumor
0.2
135
Tumor
0.2
298
Normal
0.2
464
Normal
0.2
966
Normal
0.2
858
Normal
0.1
162
Normal
0.1
392
Normal
0.1
136
Normal
0.1
878
Normal
0.1
221
Tumor
0.1
518
Normal
0.1
956
Normal
0.1
188
Normal
0.1
368
Normal
0.1
314
Normal
0.1
964
Normal
0.1
477
Tumor
0.1
354
Normal
0.1
514
Normal
0.1
466
Normal
0.1
285
Tumor
0.1
412
Normal
0.1
968
Normal
0.1
432
Normal
0.1
172
Normal
0.1
864
Normal
0.1
332
Normal
0.1
366
Normal
0.1
558
Normal
0.1
191
Tumor
0.1
385
Tumor
0.1
232
Normal
0.1
474
Normal
0.1
376
Normal
0.1
744
Normal
0.1
954
Normal
0.1
564
Normal
0.1
195
Tumor
0.0
978
Normal
0.0
383
Tumor
0.0
922
Normal
0.0
138
Normal
0.0
616
Normal
0.0
852
Normal
0.0
448
Normal
0.0
1025
Tumor
0.0
148
Normal
0.0
443
Tumor
0.0
484
Normal
0.0
882
Normal
0.0
1013
Tumor
0.0
361
Tumor
0.0
433
Tumor
0.0
352
Normal
0.0
574
Normal
0.0
912
Normal
0.0
527
Tumor
0.0
944
Normal
0.0
873
Tumor
0.0
938
Normal
0.0
284
Normal
-0.1
883
Tumor
-0.1
647
Tumor
-0.1
431
Tumor
-0.1
516
Normal
-0.1
572
Normal
-0.1
534
Normal
-0.1
573
Tumor
-0.1
975
Tumor
-0.1
545
Tumor
-0.1
223
Tumor
-0.1
714
Normal
-0.1
1014
Normal
-0.1
955
Tumor
-0.1
488
Normal
-0.2
554
Normal
-0.2
192
Normal
-0.2
745
Tumor
-0.2
641
Tumor
-0.2
1043
Tumor
-0.2
171
Tumor
-0.2
444
Normal
-0.2
958
Normal
-0.2
384
Normal
-0.2
125
Tumor
-0.2
494
Normal
-0.2
145
Tumor
-0.2
877
Tumor
-0.2
481
Tumor
-0.2
445
Tumor
-0.2
1032
Normal
-0.3
536
Normal
-0.3
224
Normal
-0.3
915
Tumor
-0.3
524
Normal
-0.3
715
Tumor
-0.3
1041
Tumor
-0.3
672
Normal
-0.3
112
Tumor
-0.3
351
Tumor
-0.3
142
Normal
-0.3
785
Tumor
-0.3
137
Tumor
-0.3
498
Normal
-0.3
627
Tumor
-0.4
857
Tumor
-0.4
393
Tumor
-0.4
415
Tumor
-0.4
563
Tumor
-0.4
447
Tumor
-0.4
913
Tumor
-0.4
147
Tumor
-0.4
231
Tumor
-0.4
161
Tumor
-0.4
271
Tumor
-0.4
421
Tumor
-0.4
983
Tumor
-0.4
492
Normal
-0.4
1027
Tumor
-0.4
341
Tumor
-0.4
814
Normal
-0.4
387
Tumor
-0.4
343
Tumor
-0.4
1045
Tumor
-0.4
455
Tumor
-0.4
963
Tumor
-0.4
567
Tumor
-0.5
777
Tumor
-0.5
917
Tumor
-0.5
737
Tumor
-0.5
727
Tumor
-0.5
435
Tumor
-0.5
487
Tumor
-0.5
391
Tumor
-0.5
865
Tumor
-0.5
277
Tumor
-0.5
131
Tumor
-0.5
497
Tumor
-0.5
661
Tumor
-0.5
911
Tumor
-0.6
478
Normal
-0.6
867
Tumor
-0.6
537
Tumor
-0.6
741
Tumor
-0.6
257
Tumor
-0.6
943
Tumor
-0.6
267
Tumor
-0.6
463
Tumor
-0.6
187
Tumor
-0.6
141
Tumor
-0.6
535
Tumor
-0.6
213
Tumor
-0.6
365
Tumor
-0.6
367
Tumor
-0.6
977
Tumor
-0.7
813
Tumor
-0.7
127
Tumor
-0.7
355
Tumor
-0.7
957
Tumor
-0.7
925
Tumor
-0.7
185
Tumor
-0.7
357
Tumor
-0.7
413
Tumor
-0.7
685
Tumor
-0.7
491
Tumor
-0.7
823
Tumor
-0.7
283
Tumor
-0.7
211
Tumor
-0.7
471
Tumor
-0.7
513
Tumor
-0.8
525
Tumor
-0.8
815
Tumor
-0.8
423
Tumor
-0.8
663
Tumor
-0.8
881
Tumor
-0.8
375
Tumor
-0.8
311
Tumor
-0.9
331
Tumor
-0.9
425
Tumor
-0.9
493
Tumor
-0.9
313
Tumor
-0.9
615
Tumor
-0.9
473
Tumor
-0.9
461
Tumor
-1.0
297
Tumor
-1.0
965
Tumor
-1.0
921
Tumor
-1.0
743
Tumor
-1.0
953
Tumor
-1.1
523
Tumor
-1.1
617
Tumor
-1.1
483
Tumor
-1.2
863
Tumor
-1.2
533
Tumor
-1.2
515
Tumor
-1.2
427
Tumor
-1.3
517
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.