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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMOC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
105.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
98.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
84.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
76.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
60.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
58.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
56.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
54.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
54.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
52.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
52.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
52.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
50.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
49.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
49.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
48.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
47.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
47.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
46.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
46.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
46.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
46.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
45.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
45.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
44.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
44.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
44.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
43.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
43.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
43.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
42.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
42.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
41.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
41.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
41.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
41.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
41.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
40.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
40.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
40.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
39.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
38.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
38.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
38.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
38.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
37.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
37.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
36.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
36.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
35.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
34.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
34.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
33.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
33.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
32.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
31.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
31.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
30.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
30.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
29.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
29.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
28.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
27.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
27.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
26.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
24.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
24.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
22.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
22.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
22.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
20.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
19.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMOC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.5
Number of samples
231
Samples
Sample
Description
TPM
DO50802
0 years, male, NA, stage:2, alive, 930 days
99.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
62.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
57.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
57.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
56.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
56.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
54.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
53.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
52.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
49.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
48.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
48.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
47.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
44.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
43.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
42.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
41.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
37.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
36.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
35.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
34.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
33.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
31.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
31.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
30.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
29.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
29.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
28.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
27.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
25.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
20.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
20.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
697
Tumor
1.3
981
Tumor
1.2
967
Tumor
1.1
523
Tumor
1.1
131
Tumor
1.0
727
Tumor
1.0
445
Tumor
0.9
285
Tumor
0.9
813
Tumor
0.9
387
Tumor
0.8
737
Tumor
0.8
955
Tumor
0.8
554
Normal
0.8
741
Tumor
0.7
867
Tumor
0.7
518
Normal
0.7
471
Tumor
0.7
635
Tumor
0.7
515
Tumor
0.6
1041
Tumor
0.6
878
Normal
0.6
425
Tumor
0.6
365
Tumor
0.6
423
Tumor
0.6
715
Tumor
0.6
743
Tumor
0.6
924
Normal
0.6
1026
Normal
0.6
363
Tumor
0.5
618
Normal
0.5
861
Tumor
0.5
952
Normal
0.5
911
Tumor
0.5
863
Tumor
0.5
746
Normal
0.4
218
Normal
0.4
342
Normal
0.4
716
Normal
0.4
755
Tumor
0.4
477
Tumor
0.4
484
Normal
0.4
696
Normal
0.4
744
Normal
0.4
615
Tumor
0.4
695
Tumor
0.4
461
Tumor
0.4
642
Normal
0.4
516
Normal
0.4
937
Tumor
0.4
344
Normal
0.4
1022
Normal
0.4
422
Normal
0.4
1015
Tumor
0.4
368
Normal
0.4
195
Tumor
0.3
616
Normal
0.3
261
Tumor
0.3
298
Normal
0.3
232
Normal
0.3
214
Normal
0.3
628
Normal
0.3
452
Normal
0.3
392
Normal
0.3
913
Tumor
0.3
641
Tumor
0.3
815
Tumor
0.3
966
Normal
0.3
286
Normal
0.3
538
Normal
0.3
778
Normal
0.3
865
Tumor
0.3
448
Normal
0.3
627
Tumor
0.3
394
Normal
0.3
186
Normal
0.3
873
Tumor
0.3
685
Tumor
0.2
965
Tumor
0.2
956
Normal
0.2
297
Tumor
0.2
742
Normal
0.2
376
Normal
0.2
546
Normal
0.2
922
Normal
0.2
353
Tumor
0.2
412
Normal
0.2
112
Tumor
0.2
354
Normal
0.2
698
Normal
0.2
413
Tumor
0.2
728
Normal
0.2
431
Tumor
0.2
982
Normal
0.2
436
Normal
0.2
137
Tumor
0.2
465
Tumor
0.2
386
Normal
0.2
222
Normal
0.2
358
Normal
0.2
396
Normal
0.2
975
Tumor
0.2
535
Tumor
0.2
138
Normal
0.2
1027
Tumor
0.2
132
Normal
0.2
862
Normal
0.2
474
Normal
0.2
456
Normal
0.2
714
Normal
0.2
468
Normal
0.2
568
Normal
0.1
816
Normal
0.1
367
Tumor
0.1
146
Normal
0.1
217
Tumor
0.1
362
Normal
0.1
536
Normal
0.1
915
Tumor
0.1
424
Normal
0.1
852
Normal
0.1
331
Tumor
0.1
492
Normal
0.1
968
Normal
0.1
262
Normal
0.1
426
Normal
0.1
384
Normal
0.1
517
Tumor
0.1
366
Normal
0.1
864
Normal
0.1
738
Normal
0.1
221
Tumor
0.1
918
Normal
0.1
124
Normal
0.1
881
Tumor
0.1
938
Normal
0.1
271
Tumor
0.1
524
Normal
0.1
135
Tumor
0.1
462
Normal
0.1
526
Normal
0.1
723
Tumor
0.1
1016
Normal
0.1
662
Normal
0.1
914
Normal
0.1
414
Normal
0.1
1045
Tumor
0.1
142
Normal
0.1
553
Tumor
0.1
513
Tumor
0.1
228
Normal
0.1
1028
Normal
0.1
824
Normal
0.1
393
Tumor
0.1
196
Normal
0.1
858
Normal
0.1
636
Normal
0.1
472
Normal
0.1
494
Normal
0.1
416
Normal
0.1
388
Normal
0.0
785
Tumor
0.0
341
Tumor
0.0
1044
Normal
0.0
874
Normal
0.0
958
Normal
0.0
313
Tumor
0.0
666
Normal
0.0
664
Normal
0.0
493
Tumor
0.0
162
Normal
0.0
963
Tumor
0.0
385
Tumor
0.0
814
Normal
0.0
648
Normal
0.0
572
Normal
0.0
352
Normal
0.0
434
Normal
0.0
661
Tumor
0.0
223
Tumor
0.0
136
Normal
0.0
564
Normal
0.0
882
Normal
0.0
617
Tumor
0.0
977
Tumor
0.0
481
Tumor
0.0
964
Normal
0.0
451
Tumor
0.0
258
Normal
0.0
272
Normal
0.0
455
Tumor
0.0
141
Tumor
0.0
464
Normal
0.0
415
Tumor
0.0
883
Tumor
0.0
527
Tumor
0.0
671
Tumor
0.0
818
Normal
0.0
278
Normal
0.0
466
Normal
0.0
574
Normal
0.0
976
Normal
0.0
756
Normal
-0.1
866
Normal
-0.1
528
Normal
-0.1
231
Tumor
-0.1
488
Normal
-0.1
823
Tumor
-0.1
672
Normal
-0.1
421
Tumor
-0.1
647
Tumor
-0.1
686
Normal
-0.1
482
Normal
-0.1
558
Normal
-0.1
1014
Normal
-0.1
428
Normal
-0.1
1042
Normal
-0.1
327
Tumor
-0.1
926
Normal
-0.1
563
Tumor
-0.1
665
Tumor
-0.1
557
Tumor
-0.1
446
Normal
-0.1
984
Normal
-0.1
383
Tumor
-0.1
356
Normal
-0.1
745
Tumor
-0.1
111
Normal
-0.1
148
Normal
-0.1
478
Normal
-0.1
332
Normal
-0.1
514
Normal
-0.1
172
Normal
-0.2
212
Normal
-0.2
447
Tumor
-0.2
1046
Normal
-0.2
114
Normal
-0.2
498
Normal
-0.2
463
Tumor
-0.2
267
Tumor
-0.2
954
Normal
-0.2
357
Tumor
-0.2
432
Normal
-0.2
857
Tumor
-0.2
978
Normal
-0.2
351
Tumor
-0.2
224
Normal
-0.2
355
Tumor
-0.2
534
Normal
-0.2
473
Tumor
-0.2
1043
Tumor
-0.2
312
Normal
-0.2
786
Normal
-0.2
185
Tumor
-0.2
533
Tumor
-0.2
361
Tumor
-0.2
145
Tumor
-0.2
314
Normal
-0.2
868
Normal
-0.2
268
Normal
-0.2
944
Normal
-0.2
364
Normal
-0.2
1032
Normal
-0.3
192
Normal
-0.3
443
Tumor
-0.3
943
Tumor
-0.3
721
Tumor
-0.3
884
Normal
-0.3
916
Normal
-0.3
925
Tumor
-0.3
128
Normal
-0.3
391
Tumor
-0.3
284
Normal
-0.3
483
Tumor
-0.3
187
Tumor
-0.4
328
Normal
-0.4
912
Normal
-0.4
983
Tumor
-0.4
777
Tumor
-0.4
227
Tumor
-0.4
877
Tumor
-0.4
433
Tumor
-0.4
126
Normal
-0.4
545
Tumor
-0.4
487
Tumor
-0.4
375
Tumor
-0.4
722
Normal
-0.4
277
Tumor
-0.5
411
Tumor
-0.5
713
Tumor
-0.5
444
Normal
-0.5
343
Tumor
-0.5
663
Tumor
-0.5
435
Tumor
-0.5
171
Tumor
-0.5
1031
Tumor
-0.5
188
Normal
-0.6
923
Tumor
-0.6
395
Tumor
-0.6
147
Tumor
-0.6
921
Tumor
-0.6
161
Tumor
-0.6
213
Tumor
-0.7
571
Tumor
-0.7
311
Tumor
-0.7
1025
Tumor
-0.7
191
Tumor
-0.8
467
Tumor
-0.8
917
Tumor
-0.8
491
Tumor
-0.8
953
Tumor
-0.8
1021
Tumor
-0.8
497
Tumor
-0.8
125
Tumor
-0.9
257
Tumor
-0.9
525
Tumor
-0.9
957
Tumor
-0.9
127
Tumor
-1.0
427
Tumor
-1.0
537
Tumor
-1.1
851
Tumor
-1.1
113
Tumor
-1.1
567
Tumor
-1.1
817
Tumor
-1.1
1013
Tumor
-1.2
951
Tumor
-1.3
724
Normal
-1.3
211
Tumor
-1.4
283
Tumor
-1.5
573
Tumor
-1.8
123
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
