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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
2.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CEP290 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.8
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
817
Tumor
1.8
857
Tumor
1.8
982
Normal
1.7
1016
Normal
1.6
1014
Normal
1.4
984
Normal
1.3
391
Tumor
1.1
426
Normal
1.1
978
Normal
1.1
816
Normal
1.0
858
Normal
1.0
396
Normal
0.9
195
Tumor
0.9
468
Normal
0.9
386
Normal
0.8
482
Normal
0.8
388
Normal
0.7
385
Tumor
0.7
472
Normal
0.7
451
Tumor
0.7
331
Tumor
0.6
392
Normal
0.6
464
Normal
0.6
394
Normal
0.6
422
Normal
0.6
414
Normal
0.6
142
Normal
0.6
823
Tumor
0.5
423
Tumor
0.5
452
Normal
0.5
428
Normal
0.5
436
Normal
0.5
395
Tumor
0.5
513
Tumor
0.5
463
Tumor
0.5
473
Tumor
0.5
478
Normal
0.5
365
Tumor
0.5
456
Normal
0.5
852
Normal
0.5
283
Tumor
0.5
695
Tumor
0.5
981
Tumor
0.5
432
Normal
0.5
487
Tumor
0.4
351
Tumor
0.4
466
Normal
0.4
924
Normal
0.4
824
Normal
0.4
518
Normal
0.4
356
Normal
0.4
462
Normal
0.4
616
Normal
0.4
191
Tumor
0.4
366
Normal
0.4
493
Tumor
0.4
285
Tumor
0.4
362
Normal
0.4
376
Normal
0.4
271
Tumor
0.4
213
Tumor
0.4
474
Normal
0.4
481
Tumor
0.4
113
Tumor
0.3
1032
Normal
0.3
363
Tumor
0.3
514
Normal
0.3
314
Normal
0.3
926
Normal
0.3
424
Normal
0.3
141
Tumor
0.3
922
Normal
0.3
1046
Normal
0.3
527
Tumor
0.3
137
Tumor
0.3
743
Tumor
0.3
983
Tumor
0.3
368
Normal
0.3
223
Tumor
0.3
446
Normal
0.3
523
Tumor
0.3
916
Normal
0.3
332
Normal
0.3
515
Tumor
0.3
943
Tumor
0.3
477
Tumor
0.3
944
Normal
0.3
483
Tumor
0.3
286
Normal
0.3
491
Tumor
0.3
851
Tumor
0.3
497
Tumor
0.3
353
Tumor
0.3
1044
Normal
0.3
572
Normal
0.3
517
Tumor
0.3
127
Tumor
0.3
741
Tumor
0.3
192
Normal
0.3
568
Normal
0.3
533
Tumor
0.3
123
Tumor
0.3
211
Tumor
0.3
138
Normal
0.2
434
Normal
0.2
526
Normal
0.2
628
Normal
0.2
128
Normal
0.2
328
Normal
0.2
421
Tumor
0.2
953
Tumor
0.2
312
Normal
0.2
737
Tumor
0.2
327
Tumor
0.2
114
Normal
0.2
698
Normal
0.2
728
Normal
0.2
427
Tumor
0.2
954
Normal
0.2
136
Normal
0.2
571
Tumor
0.2
448
Normal
0.2
125
Tumor
0.2
131
Tumor
0.2
642
Normal
0.2
425
Tumor
0.2
525
Tumor
0.2
361
Tumor
0.2
412
Normal
0.2
818
Normal
0.1
298
Normal
0.1
723
Tumor
0.1
445
Tumor
0.1
278
Normal
0.1
738
Normal
0.1
715
Tumor
0.1
1013
Tumor
0.1
444
Normal
0.1
344
Normal
0.1
938
Normal
0.1
666
Normal
0.1
617
Tumor
0.1
488
Normal
0.1
124
Normal
0.1
727
Tumor
0.1
126
Normal
0.1
664
Normal
0.1
196
Normal
0.1
471
Tumor
0.1
112
Tumor
0.1
1042
Normal
0.1
343
Tumor
0.1
964
Normal
0.1
746
Normal
0.1
524
Normal
0.1
111
Normal
0.1
415
Tumor
0.1
465
Tumor
0.1
977
Tumor
0.1
313
Tumor
0.1
224
Normal
0.1
186
Normal
0.1
145
Tumor
0.1
537
Tumor
0.1
534
Normal
0.1
228
Normal
0.1
212
Normal
0.1
742
Normal
0.1
221
Tumor
0.1
231
Tumor
0.0
148
Normal
0.0
297
Tumor
0.0
516
Normal
0.0
364
Normal
0.0
574
Normal
0.0
538
Normal
0.0
546
Normal
0.0
553
Tumor
0.0
564
Normal
0.0
618
Normal
0.0
956
Normal
0.0
435
Tumor
0.0
975
Tumor
0.0
672
Normal
0.0
498
Normal
0.0
636
Normal
0.0
528
Normal
0.0
663
Tumor
0.0
484
Normal
0.0
467
Tumor
0.0
918
Normal
0.0
745
Tumor
0.0
744
Normal
0.0
411
Tumor
0.0
135
Tumor
0.0
172
Normal
0.0
915
Tumor
0.0
433
Tumor
0.0
1021
Tumor
0.0
387
Tumor
0.0
431
Tumor
0.0
227
Tumor
0.0
352
Normal
-0.1
874
Normal
-0.1
341
Tumor
-0.1
277
Tumor
-0.1
968
Normal
-0.1
1043
Tumor
-0.1
976
Normal
-0.1
132
Normal
-0.1
257
Tumor
-0.1
662
Normal
-0.1
455
Tumor
-0.1
1031
Tumor
-0.1
413
Tumor
-0.1
724
Normal
-0.1
554
Normal
-0.1
917
Tumor
-0.1
778
Normal
-0.1
355
Tumor
-0.1
272
Normal
-0.1
648
Normal
-0.1
937
Tumor
-0.1
558
Normal
-0.1
862
Normal
-0.1
383
Tumor
-0.1
686
Normal
-0.1
267
Tumor
-0.1
786
Normal
-0.1
958
Normal
-0.1
262
Normal
-0.1
146
Normal
-0.1
217
Tumor
-0.1
685
Tumor
-0.1
955
Tumor
-0.1
492
Normal
-0.1
1026
Normal
-0.1
494
Normal
-0.1
384
Normal
-0.1
461
Tumor
-0.1
311
Tumor
-0.1
665
Tumor
-0.1
1022
Normal
-0.2
258
Normal
-0.2
284
Normal
-0.2
354
Normal
-0.2
1015
Tumor
-0.2
545
Tumor
-0.2
777
Tumor
-0.2
921
Tumor
-0.2
952
Normal
-0.2
914
Normal
-0.2
721
Tumor
-0.2
268
Normal
-0.2
963
Tumor
-0.2
868
Normal
-0.2
714
Normal
-0.2
162
Normal
-0.2
232
Normal
-0.2
716
Normal
-0.2
966
Normal
-0.2
881
Tumor
-0.2
647
Tumor
-0.2
756
Normal
-0.2
867
Tumor
-0.2
957
Tumor
-0.2
722
Normal
-0.2
393
Tumor
-0.3
864
Normal
-0.3
863
Tumor
-0.3
882
Normal
-0.3
866
Normal
-0.3
218
Normal
-0.3
1025
Tumor
-0.3
877
Tumor
-0.3
615
Tumor
-0.3
573
Tumor
-0.3
342
Normal
-0.3
785
Tumor
-0.3
951
Tumor
-0.4
188
Normal
-0.4
661
Tumor
-0.4
443
Tumor
-0.4
357
Tumor
-0.4
696
Normal
-0.4
713
Tumor
-0.4
884
Normal
-0.4
557
Tumor
-0.4
1045
Tumor
-0.4
563
Tumor
-0.4
755
Tumor
-0.4
912
Normal
-0.4
375
Tumor
-0.5
1027
Tumor
-0.5
261
Tumor
-0.5
925
Tumor
-0.5
967
Tumor
-0.5
1028
Normal
-0.5
187
Tumor
-0.5
185
Tumor
-0.5
641
Tumor
-0.5
878
Normal
-0.5
567
Tumor
-0.5
367
Tumor
-0.5
147
Tumor
-0.5
627
Tumor
-0.5
1041
Tumor
-0.6
171
Tumor
-0.6
635
Tumor
-0.6
358
Normal
-0.6
883
Tumor
-0.6
965
Tumor
-0.6
911
Tumor
-0.7
923
Tumor
-0.7
671
Tumor
-0.7
814
Normal
-0.7
161
Tumor
-0.7
913
Tumor
-0.8
813
Tumor
-0.8
536
Normal
-0.8
861
Tumor
-0.8
873
Tumor
-0.9
447
Tumor
-0.9
865
Tumor
-1.0
535
Tumor
-1.5
697
Tumor
-1.6
416
Normal
-1.8
815
Tumor
-3.7
214
Normal
N/A
222
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
