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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C6orf89 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
80.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
63.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
58.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
58.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
57.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
55.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
54.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
53.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
53.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
53.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
51.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
50.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
50.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
49.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
48.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
47.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
46.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
45.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
45.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
44.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
43.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
43.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
43.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
43.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
43.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
42.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
42.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
42.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
41.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
41.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
40.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
40.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
38.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
38.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
37.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
36.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
36.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
36.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
35.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
35.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
34.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
34.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
33.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
33.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
33.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
33.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
31.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
31.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
31.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
30.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
29.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
28.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
27.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
27.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
25.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
23.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
23.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
22.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
20.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
18.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
17.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C6orf89 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.0
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
47.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
36.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
34.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
31.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
29.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
28.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
28.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
25.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
977
Tumor
1.1
112
Tumor
1.0
944
Normal
1.0
1041
Tumor
0.9
231
Tumor
0.8
1015
Tumor
0.8
938
Normal
0.8
127
Tumor
0.8
863
Tumor
0.8
267
Tumor
0.8
877
Tumor
0.7
911
Tumor
0.7
956
Normal
0.7
473
Tumor
0.7
1013
Tumor
0.7
955
Tumor
0.6
557
Tumor
0.6
493
Tumor
0.6
443
Tumor
0.6
477
Tumor
0.6
313
Tumor
0.6
221
Tumor
0.5
641
Tumor
0.5
744
Normal
0.5
191
Tumor
0.5
435
Tumor
0.5
517
Tumor
0.4
964
Normal
0.4
161
Tumor
0.4
445
Tumor
0.4
954
Normal
0.4
913
Tumor
0.4
1042
Normal
0.4
195
Tumor
0.4
963
Tumor
0.4
715
Tumor
0.4
685
Tumor
0.4
224
Normal
0.4
823
Tumor
0.4
968
Normal
0.4
431
Tumor
0.4
742
Normal
0.3
663
Tumor
0.3
192
Normal
0.3
1032
Normal
0.3
461
Tumor
0.3
523
Tumor
0.3
861
Tumor
0.3
196
Normal
0.3
515
Tumor
0.3
135
Tumor
0.3
615
Tumor
0.3
483
Tumor
0.3
217
Tumor
0.3
162
Normal
0.3
958
Normal
0.3
777
Tumor
0.3
213
Tumor
0.3
331
Tumor
0.3
212
Normal
0.3
567
Tumor
0.3
222
Normal
0.3
388
Normal
0.3
478
Normal
0.3
484
Normal
0.3
356
Normal
0.2
123
Tumor
0.2
1026
Normal
0.2
636
Normal
0.2
873
Tumor
0.2
433
Tumor
0.2
395
Tumor
0.2
952
Normal
0.2
343
Tumor
0.2
824
Normal
0.2
721
Tumor
0.2
497
Tumor
0.2
965
Tumor
0.2
741
Tumor
0.2
723
Tumor
0.2
277
Tumor
0.2
666
Normal
0.2
147
Tumor
0.2
464
Normal
0.2
816
Normal
0.2
867
Tumor
0.2
261
Tumor
0.2
491
Tumor
0.2
466
Normal
0.2
187
Tumor
0.2
883
Tumor
0.2
976
Normal
0.2
465
Tumor
0.2
367
Tumor
0.2
648
Normal
0.2
858
Normal
0.2
662
Normal
0.2
616
Normal
0.1
738
Normal
0.1
446
Normal
0.1
737
Tumor
0.1
785
Tumor
0.1
494
Normal
0.1
172
Normal
0.1
452
Normal
0.1
298
Normal
0.1
865
Tumor
0.1
488
Normal
0.1
967
Tumor
0.1
361
Tumor
0.1
745
Tumor
0.1
818
Normal
0.1
186
Normal
0.1
471
Tumor
0.1
857
Tumor
0.1
1014
Normal
0.1
332
Normal
0.1
1028
Normal
0.1
525
Tumor
0.1
642
Normal
0.1
393
Tumor
0.1
627
Tumor
0.1
436
Normal
0.1
746
Normal
0.1
482
Normal
0.1
1022
Normal
0.1
394
Normal
0.1
171
Tumor
0.1
975
Tumor
0.1
128
Normal
0.1
314
Normal
0.1
357
Tumor
0.1
185
Tumor
0.1
218
Normal
0.0
365
Tumor
0.0
664
Normal
0.0
284
Normal
0.0
353
Tumor
0.0
432
Normal
0.0
862
Normal
0.0
882
Normal
0.0
618
Normal
0.0
258
Normal
0.0
695
Tumor
0.0
462
Normal
0.0
966
Normal
0.0
366
Normal
0.0
368
Normal
0.0
286
Normal
0.0
376
Normal
0.0
111
Normal
0.0
981
Tumor
0.0
396
Normal
0.0
145
Tumor
0.0
214
Normal
0.0
141
Tumor
0.0
384
Normal
0.0
434
Normal
0.0
756
Normal
0.0
257
Tumor
0.0
672
Normal
0.0
572
Normal
0.0
375
Tumor
0.0
498
Normal
0.0
124
Normal
0.0
468
Normal
0.0
513
Tumor
0.0
148
Normal
0.0
524
Normal
0.0
686
Normal
0.0
665
Tumor
0.0
852
Normal
0.0
283
Tumor
0.0
573
Tumor
0.0
142
Normal
0.0
951
Tumor
-0.1
456
Normal
-0.1
268
Normal
-0.1
126
Normal
-0.1
563
Tumor
-0.1
817
Tumor
-0.1
472
Normal
-0.1
311
Tumor
-0.1
146
Normal
-0.1
137
Tumor
-0.1
957
Tumor
-0.1
342
Normal
-0.1
487
Tumor
-0.1
211
Tumor
-0.1
558
Normal
-0.1
984
Normal
-0.1
228
Normal
-0.1
628
Normal
-0.1
743
Tumor
-0.1
132
Normal
-0.1
341
Tumor
-0.1
912
Normal
-0.1
533
Tumor
-0.1
297
Tumor
-0.1
362
Normal
-0.1
411
Tumor
-0.1
392
Normal
-0.1
983
Tumor
-0.1
278
Normal
-0.1
526
Normal
-0.1
125
Tumor
-0.1
232
Normal
-0.1
383
Tumor
-0.1
467
Tumor
-0.1
114
Normal
-0.1
866
Normal
-0.1
364
Normal
-0.1
728
Normal
-0.1
416
Normal
-0.1
463
Tumor
-0.1
188
Normal
-0.1
474
Normal
-0.1
884
Normal
-0.1
391
Tumor
-0.1
786
Normal
-0.1
492
Normal
-0.1
571
Tumor
-0.1
227
Tumor
-0.1
262
Normal
-0.1
878
Normal
-0.2
635
Tumor
-0.2
778
Normal
-0.2
574
Normal
-0.2
716
Normal
-0.2
271
Tumor
-0.2
1027
Tumor
-0.2
312
Normal
-0.2
868
Normal
-0.2
385
Tumor
-0.2
874
Normal
-0.2
516
Normal
-0.2
554
Normal
-0.2
713
Tumor
-0.2
136
Normal
-0.2
914
Normal
-0.2
978
Normal
-0.2
514
Normal
-0.2
568
Normal
-0.2
1025
Tumor
-0.2
412
Normal
-0.2
386
Normal
-0.2
714
Normal
-0.2
724
Normal
-0.2
138
Normal
-0.2
518
Normal
-0.2
272
Normal
-0.2
352
Normal
-0.2
328
Normal
-0.2
1021
Tumor
-0.2
358
Normal
-0.2
553
Tumor
-0.2
1016
Normal
-0.2
451
Tumor
-0.3
564
Normal
-0.3
864
Normal
-0.3
937
Tumor
-0.3
387
Tumor
-0.3
814
Normal
-0.3
851
Tumor
-0.3
354
Normal
-0.3
881
Tumor
-0.3
671
Tumor
-0.3
344
Normal
-0.3
113
Tumor
-0.3
696
Normal
-0.3
982
Normal
-0.3
351
Tumor
-0.3
223
Tumor
-0.3
813
Tumor
-0.3
131
Tumor
-0.3
647
Tumor
-0.4
444
Normal
-0.4
943
Tumor
-0.4
815
Tumor
-0.4
722
Normal
-0.4
546
Normal
-0.4
538
Normal
-0.4
755
Tumor
-0.4
415
Tumor
-0.4
537
Tumor
-0.5
528
Normal
-0.5
327
Tumor
-0.5
1031
Tumor
-0.5
481
Tumor
-0.5
455
Tumor
-0.5
727
Tumor
-0.5
617
Tumor
-0.6
527
Tumor
-0.6
534
Normal
-0.6
545
Tumor
-0.7
661
Tumor
-0.8
355
Tumor
-0.8
953
Tumor
-1.0
285
Tumor
-1.0
363
Tumor
-1.0
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1046
Normal
N/A
1045
Tumor
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
