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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAFK is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
110.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
61.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
48.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
47.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
47.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
42.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
35.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
34.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
31.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
22.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAFK is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.6
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
183.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
102.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
96.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
84.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
77.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
73.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
59.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
58.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
48.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
43.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
41.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
39.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
39.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
39.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
39.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
38.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
37.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
35.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
33.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
32.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.0
355
Tumor
0.9
497
Tumor
0.9
957
Tumor
0.9
375
Tumor
0.8
491
Tumor
0.8
367
Tumor
0.8
535
Tumor
0.8
366
Normal
0.8
965
Tumor
0.8
537
Tumor
0.8
217
Tumor
0.7
967
Tumor
0.7
445
Tumor
0.7
395
Tumor
0.7
362
Normal
0.7
435
Tumor
0.7
817
Tumor
0.7
697
Tumor
0.7
368
Normal
0.6
392
Normal
0.6
627
Tumor
0.6
125
Tumor
0.6
813
Tumor
0.6
384
Normal
0.6
365
Tumor
0.6
724
Normal
0.6
671
Tumor
0.6
383
Tumor
0.6
877
Tumor
0.6
271
Tumor
0.6
343
Tumor
0.5
331
Tumor
0.5
396
Normal
0.5
527
Tumor
0.5
388
Normal
0.5
358
Normal
0.5
815
Tumor
0.5
387
Tumor
0.5
443
Tumor
0.5
493
Tumor
0.5
737
Tumor
0.5
386
Normal
0.5
641
Tumor
0.5
636
Normal
0.5
231
Tumor
0.4
573
Tumor
0.4
385
Tumor
0.4
515
Tumor
0.4
618
Normal
0.4
376
Normal
0.4
517
Tumor
0.4
351
Tumor
0.4
431
Tumor
0.4
361
Tumor
0.4
975
Tumor
0.4
615
Tumor
0.4
814
Normal
0.4
313
Tumor
0.4
642
Normal
0.4
311
Tumor
0.4
635
Tumor
0.4
628
Normal
0.4
743
Tumor
0.3
685
Tumor
0.3
663
Tumor
0.3
553
Tumor
0.3
525
Tumor
0.3
447
Tumor
0.3
538
Normal
0.3
851
Tumor
0.3
524
Normal
0.3
672
Normal
0.3
865
Tumor
0.3
135
Tumor
0.3
357
Tumor
0.3
574
Normal
0.3
545
Tumor
0.3
963
Tumor
0.3
185
Tumor
0.3
881
Tumor
0.3
1016
Normal
0.3
353
Tumor
0.3
297
Tumor
0.2
427
Tumor
0.2
433
Tumor
0.2
925
Tumor
0.2
492
Normal
0.2
191
Tumor
0.2
477
Tumor
0.2
536
Normal
0.2
471
Tumor
0.2
257
Tumor
0.2
661
Tumor
0.2
344
Normal
0.2
391
Tumor
0.2
394
Normal
0.2
341
Tumor
0.2
883
Tumor
0.2
434
Normal
0.2
112
Tumor
0.2
436
Normal
0.2
342
Normal
0.2
467
Tumor
0.1
1015
Tumor
0.1
981
Tumor
0.1
483
Tumor
0.1
523
Tumor
0.1
161
Tumor
0.1
192
Normal
0.1
873
Tumor
0.1
352
Normal
0.1
568
Normal
0.1
312
Normal
0.1
487
Tumor
0.1
455
Tumor
0.1
277
Tumor
0.1
863
Tumor
0.1
267
Tumor
0.1
456
Normal
0.1
721
Tumor
0.1
727
Tumor
0.1
213
Tumor
0.1
145
Tumor
0.1
982
Normal
0.1
452
Normal
0.1
354
Normal
0.1
444
Normal
0.1
261
Tumor
0.1
977
Tumor
0.1
984
Normal
0.1
857
Tumor
0.1
415
Tumor
0.0
446
Normal
0.0
498
Normal
0.0
513
Tumor
0.0
484
Normal
0.0
123
Tumor
0.0
662
Normal
0.0
823
Tumor
0.0
923
Tumor
0.0
665
Tumor
0.0
464
Normal
0.0
741
Tumor
0.0
514
Normal
0.0
393
Tumor
0.0
124
Normal
0.0
785
Tumor
0.0
616
Normal
0.0
146
Normal
0.0
268
Normal
0.0
432
Normal
0.0
1014
Normal
0.0
976
Normal
0.0
113
Tumor
0.0
136
Normal
0.0
554
Normal
0.0
617
Tumor
0.0
138
Normal
0.0
778
Normal
0.0
332
Normal
0.0
921
Tumor
0.0
488
Normal
0.0
917
Tumor
0.0
473
Tumor
-0.1
715
Tumor
-0.1
978
Normal
-0.1
451
Tumor
-0.1
424
Normal
-0.1
564
Normal
-0.1
777
Tumor
-0.1
421
Tumor
-0.1
132
Normal
-0.1
915
Tumor
-0.1
131
Tumor
-0.1
816
Normal
-0.1
728
Normal
-0.1
786
Normal
-0.1
468
Normal
-0.1
214
Normal
-0.1
722
Normal
-0.1
874
Normal
-0.1
127
Tumor
-0.1
518
Normal
-0.1
647
Tumor
-0.1
966
Normal
-0.1
147
Tumor
-0.1
913
Tumor
-0.1
756
Normal
-0.1
716
Normal
-0.1
755
Tumor
-0.1
526
Normal
-0.1
465
Tumor
-0.1
745
Tumor
-0.1
142
Normal
-0.1
861
Tumor
-0.1
494
Normal
-0.2
1045
Tumor
-0.2
478
Normal
-0.2
423
Tumor
-0.2
666
Normal
-0.2
534
Normal
-0.2
664
Normal
-0.2
528
Normal
-0.2
516
Normal
-0.2
878
Normal
-0.2
422
Normal
-0.2
1013
Tumor
-0.2
186
Normal
-0.2
111
Normal
-0.2
187
Tumor
-0.2
463
Tumor
-0.2
221
Tumor
-0.2
926
Normal
-0.2
852
Normal
-0.2
137
Tumor
-0.2
558
Normal
-0.2
188
Normal
-0.2
195
Tumor
-0.2
918
Normal
-0.2
126
Normal
-0.2
911
Tumor
-0.2
425
Tumor
-0.2
278
Normal
-0.2
411
Tumor
-0.2
563
Tumor
-0.2
713
Tumor
-0.2
426
Normal
-0.2
738
Normal
-0.2
162
Normal
-0.2
1043
Tumor
-0.2
983
Tumor
-0.2
695
Tumor
-0.3
428
Normal
-0.3
922
Normal
-0.3
648
Normal
-0.3
746
Normal
-0.3
461
Tumor
-0.3
723
Tumor
-0.3
272
Normal
-0.3
686
Normal
-0.3
466
Normal
-0.3
546
Normal
-0.3
114
Normal
-0.3
314
Normal
-0.3
916
Normal
-0.3
262
Normal
-0.3
867
Tumor
-0.3
968
Normal
-0.3
572
Normal
-0.3
298
Normal
-0.3
924
Normal
-0.3
327
Tumor
-0.3
172
Normal
-0.3
171
Tumor
-0.3
414
Normal
-0.3
1044
Normal
-0.3
557
Tumor
-0.3
413
Tumor
-0.3
866
Normal
-0.3
196
Normal
-0.3
128
Normal
-0.4
958
Normal
-0.4
448
Normal
-0.4
744
Normal
-0.4
141
Tumor
-0.4
148
Normal
-0.4
696
Normal
-0.4
363
Tumor
-0.4
472
Normal
-0.4
218
Normal
-0.4
742
Normal
-0.4
864
Normal
-0.4
258
Normal
-0.5
868
Normal
-0.5
222
Normal
-0.5
884
Normal
-0.5
232
Normal
-0.5
862
Normal
-0.5
482
Normal
-0.6
462
Normal
-0.6
567
Tumor
-0.6
882
Normal
-0.6
474
Normal
-0.6
914
Normal
-0.6
698
Normal
-0.6
571
Tumor
-0.6
824
Normal
-0.7
912
Normal
-0.7
858
Normal
-0.7
412
Normal
-0.7
364
Normal
-0.8
818
Normal
-0.8
481
Tumor
-0.8
714
Normal
-0.9
416
Normal
-0.9
1046
Normal
-0.9
328
Normal
-0.9
964
Normal
-0.9
356
Normal
-1.1
937
Tumor
N/A
938
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
211
Tumor
N/A
212
Normal
N/A
223
Tumor
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
