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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.6
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
1.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
1.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.0
313
Tumor
1.0
211
Tumor
0.9
1027
Tumor
0.9
351
Tumor
0.8
363
Tumor
0.7
536
Normal
0.7
877
Tumor
0.7
435
Tumor
0.6
444
Normal
0.6
938
Normal
0.6
492
Normal
0.6
355
Tumor
0.6
944
Normal
0.6
954
Normal
0.5
455
Tumor
0.5
697
Tumor
0.5
311
Tumor
0.5
957
Tumor
0.5
937
Tumor
0.5
261
Tumor
0.5
571
Tumor
0.5
127
Tumor
0.4
867
Tumor
0.4
431
Tumor
0.4
445
Tumor
0.4
332
Normal
0.4
524
Normal
0.4
447
Tumor
0.4
192
Normal
0.4
951
Tumor
0.4
813
Tumor
0.4
1031
Tumor
0.4
814
Normal
0.4
958
Normal
0.4
553
Tumor
0.4
981
Tumor
0.4
498
Normal
0.4
491
Tumor
0.4
123
Tumor
0.4
817
Tumor
0.3
982
Normal
0.3
925
Tumor
0.3
277
Tumor
0.3
863
Tumor
0.3
953
Tumor
0.3
224
Normal
0.3
873
Tumor
0.3
963
Tumor
0.3
695
Tumor
0.3
955
Tumor
0.3
968
Normal
0.3
815
Tumor
0.3
977
Tumor
0.3
915
Tumor
0.3
463
Tumor
0.3
1015
Tumor
0.3
367
Tumor
0.3
943
Tumor
0.3
432
Normal
0.3
1044
Normal
0.3
516
Normal
0.3
881
Tumor
0.3
724
Normal
0.3
467
Tumor
0.3
517
Tumor
0.3
297
Tumor
0.3
331
Tumor
0.2
727
Tumor
0.2
125
Tumor
0.2
131
Tumor
0.2
535
Tumor
0.2
171
Tumor
0.2
661
Tumor
0.2
984
Normal
0.2
493
Tumor
0.2
1041
Tumor
0.2
861
Tumor
0.2
917
Tumor
0.2
537
Tumor
0.2
956
Normal
0.2
823
Tumor
0.2
785
Tumor
0.2
385
Tumor
0.2
913
Tumor
0.2
314
Normal
0.2
141
Tumor
0.2
965
Tumor
0.2
912
Normal
0.2
857
Tumor
0.2
257
Tumor
0.2
514
Normal
0.2
413
Tumor
0.2
983
Tumor
0.2
816
Normal
0.2
545
Tumor
0.2
436
Normal
0.2
1021
Tumor
0.2
647
Tumor
0.2
357
Tumor
0.2
478
Normal
0.1
615
Tumor
0.1
865
Tumor
0.1
472
Normal
0.1
298
Normal
0.1
538
Normal
0.1
278
Normal
0.1
663
Tumor
0.1
523
Tumor
0.1
446
Normal
0.1
527
Tumor
0.1
1032
Normal
0.1
488
Normal
0.1
474
Normal
0.1
755
Tumor
0.1
567
Tumor
0.1
328
Normal
0.1
487
Tumor
0.1
665
Tumor
0.1
715
Tumor
0.1
128
Normal
0.1
213
Tumor
0.1
484
Normal
0.1
685
Tumor
0.1
851
Tumor
0.1
745
Tumor
0.1
975
Tumor
0.1
361
Tumor
0.1
911
Tumor
0.1
415
Tumor
0.1
533
Tumor
0.1
883
Tumor
0.1
1022
Normal
0.1
866
Normal
0.1
354
Normal
0.1
923
Tumor
0.1
884
Normal
0.1
744
Normal
0.1
383
Tumor
0.1
978
Normal
0.1
878
Normal
0.1
882
Normal
0.1
364
Normal
0.1
212
Normal
0.1
671
Tumor
0.0
223
Tumor
0.0
1028
Normal
0.0
525
Tumor
0.0
135
Tumor
0.0
471
Tumor
0.0
312
Normal
0.0
268
Normal
0.0
284
Normal
0.0
721
Tumor
0.0
375
Tumor
0.0
352
Normal
0.0
513
Tumor
0.0
924
Normal
0.0
185
Tumor
0.0
976
Normal
0.0
395
Tumor
0.0
852
Normal
0.0
113
Tumor
0.0
412
Normal
0.0
777
Tumor
0.0
786
Normal
0.0
952
Normal
0.0
114
Normal
0.0
741
Tumor
0.0
228
Normal
0.0
627
Tumor
0.0
921
Tumor
0.0
526
Normal
0.0
461
Tumor
0.0
483
Tumor
0.0
161
Tumor
0.0
518
Normal
0.0
918
Normal
0.0
344
Normal
0.0
874
Normal
0.0
356
Normal
0.0
448
Normal
0.0
746
Normal
0.0
1045
Tumor
0.0
546
Normal
0.0
778
Normal
0.0
227
Tumor
0.0
343
Tumor
0.0
353
Tumor
0.0
497
Tumor
0.0
271
Tumor
0.0
966
Normal
0.0
1043
Tumor
0.0
368
Normal
-0.1
696
Normal
-0.1
1016
Normal
-0.1
916
Normal
-0.1
145
Tumor
-0.1
564
Normal
-0.1
672
Normal
-0.1
1046
Normal
-0.1
534
Normal
-0.1
421
Tumor
-0.1
572
Normal
-0.1
926
Normal
-0.1
267
Tumor
-0.1
146
Normal
-0.1
864
Normal
-0.1
824
Normal
-0.1
387
Tumor
-0.1
818
Normal
-0.1
285
Tumor
-0.1
1014
Normal
-0.1
914
Normal
-0.1
1026
Normal
-0.1
111
Normal
-0.1
466
Normal
-0.1
641
Tumor
-0.1
635
Tumor
-0.1
427
Tumor
-0.1
528
Normal
-0.1
868
Normal
-0.1
327
Tumor
-0.1
716
Normal
-0.1
191
Tumor
-0.1
423
Tumor
-0.1
862
Normal
-0.1
433
Tumor
-0.1
743
Tumor
-0.1
698
Normal
-0.1
628
Normal
-0.1
126
Normal
-0.1
142
Normal
-0.2
922
Normal
-0.2
568
Normal
-0.2
482
Normal
-0.2
494
Normal
-0.2
1025
Tumor
-0.2
713
Tumor
-0.2
186
Normal
-0.2
272
Normal
-0.2
554
Normal
-0.2
756
Normal
-0.2
714
Normal
-0.2
742
Normal
-0.2
137
Tumor
-0.2
664
Normal
-0.2
738
Normal
-0.2
465
Tumor
-0.2
636
Normal
-0.2
858
Normal
-0.2
967
Tumor
-0.2
443
Tumor
-0.2
262
Normal
-0.2
737
Tumor
-0.2
473
Tumor
-0.2
451
Tumor
-0.2
723
Tumor
-0.2
411
Tumor
-0.2
515
Tumor
-0.2
416
Normal
-0.2
232
Normal
-0.2
221
Tumor
-0.2
426
Normal
-0.2
686
Normal
-0.2
462
Normal
-0.2
618
Normal
-0.2
393
Tumor
-0.2
424
Normal
-0.3
728
Normal
-0.3
481
Tumor
-0.3
662
Normal
-0.3
617
Tumor
-0.3
286
Normal
-0.3
1042
Normal
-0.3
341
Tumor
-0.3
172
Normal
-0.3
214
Normal
-0.3
434
Normal
-0.3
366
Normal
-0.3
642
Normal
-0.3
456
Normal
-0.3
392
Normal
-0.3
477
Tumor
-0.3
358
Normal
-0.3
365
Tumor
-0.3
558
Normal
-0.3
428
Normal
-0.3
187
Tumor
-0.3
468
Normal
-0.3
557
Tumor
-0.3
188
Normal
-0.3
148
Normal
-0.3
722
Normal
-0.3
376
Normal
-0.3
422
Normal
-0.4
616
Normal
-0.4
391
Tumor
-0.4
162
Normal
-0.4
283
Tumor
-0.4
231
Tumor
-0.4
425
Tumor
-0.4
414
Normal
-0.4
666
Normal
-0.4
384
Normal
-0.4
136
Normal
-0.4
362
Normal
-0.4
342
Normal
-0.4
124
Normal
-0.4
648
Normal
-0.4
563
Tumor
-0.4
132
Normal
-0.4
138
Normal
-0.4
394
Normal
-0.4
464
Normal
-0.4
396
Normal
-0.4
964
Normal
-0.4
573
Tumor
-0.5
386
Normal
-0.5
112
Tumor
-0.5
218
Normal
-0.5
452
Normal
-0.5
258
Normal
-0.5
574
Normal
-0.5
196
Normal
-0.5
147
Tumor
-0.5
195
Tumor
-0.5
388
Normal
-0.6
217
Tumor
-0.7
222
Normal
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
