Expression of HLA-DRB5 in liver cancer - The Human Protein Atlas

LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

HLA-DRB5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 0.32

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average TPM

33.6

Number of samples

362

Samples

Sample	Description	TPM
TCGA-DD-AACC-01A	0 years, male, asian, stage:Stage I, dead, 1685 days	967.5
TCGA-G3-A5SM-01A	0 years, male, white, stage:Stage II, alive, 520 days	586.8
TCGA-FV-A2QQ-01A	0 years, male, white, stage:Stage I, alive, 729 days	552.1
TCGA-RG-A7D4-01A	0 years, male, black or african american, stage:Stage II, alive, 1098 days	500.7
TCGA-ED-A5KG-01A	0 years, female, asian, stage:Stage II, alive, 854 days	418.8
TCGA-4R-AA8I-01A	0 years, male, white, stage:Stage II, dead, 262 days	312.4
TCGA-G3-A3CG-01A	0 years, male, white, stage:Stage I, alive, 673 days	310.6
TCGA-EP-A3RK-01A	0 years, male, white, stage:Stage IIIA, alive, 363 days	309.0
TCGA-DD-AAVV-01A	0 years, male, asian, stage:Stage II, alive, 2455 days	306.5
TCGA-DD-AAVR-01A	0 years, male, asian, stage:Stage I, alive, 2513 days	243.1
TCGA-2Y-A9GW-01A	0 years, male, white, stage:Stage I, dead, 1271 days	233.6
TCGA-EP-A3JL-01A	0 years, male, white, stage:Stage I, alive, 303 days	231.0
TCGA-K7-A5RG-01A	0 years, male, black or african american, stage:Stage I, alive, 519 days	218.2
TCGA-G3-A25V-01A	0 years, male, white, stage:Stage I, alive, 860 days	211.2
TCGA-FV-A4ZQ-01A	0 years, male, white, stage:Stage I, alive, 12 days	210.3
TCGA-O8-A75V-01A	0 years, male, stage:Stage I, alive, 538 days	197.6
TCGA-ZP-A9CZ-01A	0 years, male, asian, stage:'--, alive, 706 days	196.7
TCGA-DD-A4NS-01A	0 years, female, white, stage:Stage I, dead, 2456 days	187.6
TCGA-2Y-A9GT-01A	0 years, male, white, stage:Stage I, dead, 1624 days	177.3
TCGA-BC-A112-01A	0 years, male, white, stage:'--, dead, 153 days	168.0
TCGA-G3-A25Y-01A	0 years, female, asian, stage:Stage I, dead, 452 days	164.9
TCGA-DD-A4NO-01A	0 years, male, white, stage:Stage I, alive, 2245 days	162.0
TCGA-CC-5261-01A	0 years, male, asian, stage:Stage II, dead, 97 days	158.7
TCGA-K7-A6G5-01A	0 years, male, white, stage:Stage I, alive, 512 days	157.0
TCGA-DD-AAEK-01A	0 years, male, asian, stage:Stage II, alive, 1067 days	154.5
TCGA-ZS-A9CD-01A	0 years, male, white, stage:Stage II, dead, 1386 days	143.2
TCGA-2Y-A9H4-01A	0 years, male, black or african american, stage:Stage I, alive, 1452 days	138.0
TCGA-MI-A75H-01A	0 years, male, white, stage:'--, alive, 747 days	136.2
TCGA-FV-A3R3-01A	0 years, female, white, stage:Stage I, dead, 366 days	123.7
TCGA-DD-A39V-01A	0 years, male, white, stage:Stage II, dead, 643 days	122.1
TCGA-2Y-A9H1-01A	0 years, male, white, stage:Stage I, dead, 1229 days	119.1
TCGA-G3-AAV3-01A	0 years, female, white, stage:Stage II, alive, 412 days	114.3
TCGA-DD-AADS-01A	0 years, male, asian, stage:Stage I, alive, 474 days	111.3
TCGA-DD-A4NJ-01A	0 years, female, white, stage:Stage II, alive, 928 days	110.7
TCGA-G3-A5SK-01A	0 years, male, white, stage:Stage I, alive, 744 days	104.4
TCGA-2Y-A9H6-01A	0 years, female, white, stage:Stage I, alive, 357 days	103.8
TCGA-FV-A23B-01A	0 years, female, white, stage:Stage II, dead, 1852 days	98.9
TCGA-DD-A1EE-01A	0 years, male, white, stage:Stage IIIA, dead, 349 days	94.9
TCGA-DD-A118-01A	0 years, female, white, stage:Stage II, alive, 3437 days	92.7
TCGA-G3-AAUZ-01A	0 years, male, stage:Stage I, alive, 480 days	91.9
TCGA-DD-AACN-01A	0 years, male, asian, stage:Stage I, alive, 1302 days	90.9
TCGA-DD-AACK-01A	0 years, male, asian, stage:Stage I, alive, 9 days	85.5
TCGA-ZP-A9CY-01A	0 years, female, white, stage:'--, alive, 782 days	79.1
TCGA-CC-A7IH-01A	0 years, male, asian, stage:Stage IIIA, alive, 365 days	77.1
TCGA-G3-AAV4-01A	0 years, female, white, stage:Stage I, dead, 27 days	76.8
TCGA-G3-A7M8-01A	0 years, male, asian, stage:Stage I, alive, 430 days	76.6
TCGA-XR-A8TG-01A	0 years, male, white, stage:Stage I, alive, 898 days	74.3
TCGA-DD-A3A9-01A	0 years, female, white, stage:Stage IVB, dead, 931 days	74.2
TCGA-DD-AADD-01A	0 years, male, asian, stage:Stage I, alive, 1231 days	74.2
TCGA-2Y-A9H8-01A	0 years, female, white, stage:'--, dead, 633 days	70.6
TCGA-DD-AADO-01A	0 years, male, asian, stage:Stage I, alive, 453 days	70.6
TCGA-2Y-A9H9-01A	0 years, male, white, stage:Stage I, alive, 697 days	66.7
TCGA-DD-A73C-01A	0 years, female, white, stage:Stage IIIA, alive, 701 days	66.7
TCGA-3K-AAZ8-01A	0 years, male, black or african american, stage:Stage IIIB, alive, 396 days	66.2
TCGA-DD-AAC9-01A	0 years, male, asian, stage:Stage I, alive, 347 days	65.5
TCGA-DD-A119-01A	0 years, male, asian, stage:Stage IV, dead, 223 days	63.9
TCGA-DD-A4NK-01A	0 years, female, white, stage:Stage IIIA, dead, 1210 days	63.6
TCGA-BC-A10T-01A	0 years, male, white, stage:'--, dead, 837 days	61.5
TCGA-2Y-A9H7-01A	0 years, female, white, stage:Stage I, alive, 1168 days	61.2
TCGA-DD-A39W-01A	0 years, female, white, stage:Stage III, dead, 827 days	58.4
TCGA-T1-A6J8-01A	0 years, male, white, stage:'--, alive, 23 days	57.0
TCGA-DD-AAVZ-01A	0 years, male, asian, stage:Stage I, alive, 1900 days	53.3
TCGA-G3-A25S-01A	0 years, male, white, stage:Stage I, dead, 416 days	52.9
TCGA-G3-A3CI-01A	0 years, male, white, stage:Stage I, alive, 180 days	52.5
TCGA-ED-A459-01A	0 years, male, asian, stage:Stage II, alive, 910 days	51.2
TCGA-UB-A7MA-01A	0 years, female, white, stage:Stage II, alive, 848 days	48.9
TCGA-XR-A8TE-01A	0 years, male, white, stage:Stage IIIA, alive, 925 days	48.8
TCGA-DD-AACA-01A	0 years, male, asian, stage:Stage I, alive, 2301 days	44.3
TCGA-CC-A7IJ-01A	0 years, male, asian, stage:Stage II, alive, 382 days	41.6
TCGA-DD-A3A2-01A	0 years, female, white, stage:Stage I, dead, 2131 days	40.6
TCGA-G3-A5SL-01A	0 years, male, white, stage:Stage II, alive, 621 days	38.1
TCGA-BW-A5NO-01A	0 years, male, black or african american, stage:Stage IIIA, alive, 20 days	38.0
TCGA-MI-A75I-01A	0 years, male, black or african american, stage:'--, alive, 630 days	37.9
TCGA-DD-AAED-01A	0 years, male, asian, stage:Stage I, alive, 763 days	35.9
TCGA-DD-AAE9-01A	0 years, male, asian, stage:Stage I, alive, 722 days	34.7
TCGA-WQ-AB4B-01A	0 years, male, white, stage:Stage II, alive, 395 days	33.2
TCGA-DD-AADF-01A	0 years, female, asian, stage:Stage I, dead, 115 days	31.4
TCGA-FV-A496-01A	0 years, female, white, stage:Stage I, alive, 10 days	31.2
TCGA-DD-A39Y-01A	0 years, male, asian, stage:Stage I, dead, 171 days	31.1
TCGA-MR-A520-01A	0 years, male, white, stage:Stage I, alive, 229 days	29.9
TCGA-DD-AAW2-01A	0 years, male, asian, stage:Stage I, alive, 1855 days	29.5
TCGA-G3-A6UC-01A	0 years, male, white, stage:Stage IIIB, alive, 671 days	29.4
TCGA-UB-A7MC-01A	0 years, male, white, stage:Stage IIIA, alive, 500 days	28.9
TCGA-2Y-A9H2-01A	0 years, female, white, stage:Stage I, alive, 1731 days	28.2
TCGA-ED-A66Y-01A	0 years, female, asian, stage:Stage IIIA, dead, 296 days	26.7
TCGA-DD-AACV-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	26.5
TCGA-EP-A2KB-01A	0 years, female, white, stage:Stage I, dead, 596 days	25.4
TCGA-LG-A9QC-01A	0 years, male, white, stage:Stage I, alive, 425 days	24.1
TCGA-DD-AAVY-01A	0 years, male, asian, stage:Stage IIIA, alive, 1970 days	24.0
TCGA-ES-A2HS-01A	0 years, male, white, stage:Stage I, dead, 688 days	23.8
TCGA-RC-A7SF-01A	0 years, male, asian, stage:Stage I, alive, 579 days	23.3
TCGA-CC-A7II-01A	0 years, male, asian, stage:Stage IIIA, alive, 399 days	22.3
TCGA-5C-A9VH-01A	0 years, male, white, stage:Stage I, alive, 322 days	20.7
TCGA-G3-A25U-01A	0 years, female, asian, stage:Stage I, alive, 1636 days	19.6
TCGA-CC-A3MC-01A	0 years, male, asian, stage:Stage IIIA, alive, 363 days	17.8
TCGA-ED-A66X-01A	0 years, male, asian, stage:Stage IIIA, alive, 406 days	17.5
TCGA-DD-A4NE-01A	0 years, female, white, stage:Stage IIIA, dead, 660 days	17.0
TCGA-DD-A73D-01A	0 years, female, white, stage:Stage II, alive, 693 days	16.1
TCGA-BC-A8YO-01A	0 years, female, white, stage:Stage IIIC, alive, 562 days	16.0
TCGA-CC-A1HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 101 days	15.4
TCGA-5R-AAAM-01A	0 years, female, white, stage:Stage II, dead, 46 days	14.9
TCGA-CC-A3M9-01A	0 years, male, asian, stage:Stage IIIA, dead, 300 days	12.9
TCGA-DD-A3A4-01A	0 years, male, white, stage:Stage IIIA, dead, 612 days	11.0
TCGA-ED-A82E-01A	0 years, female, asian, stage:Stage IIIA, alive, 408 days	10.2
TCGA-CC-A3MA-01A	0 years, male, asian, stage:Stage IIIA, dead, 303 days	9.7
TCGA-LG-A9QD-01A	0 years, male, white, stage:Stage IIIA, alive, 366 days	8.9
TCGA-DD-AAEH-01A	0 years, male, asian, stage:Stage I, alive, 784 days	7.9
TCGA-MI-A75C-01A	0 years, male, white, stage:Stage I, alive, 291 days	7.8
TCGA-DD-AAVW-01A	0 years, male, asian, stage:Stage I, alive, 2317 days	7.7
TCGA-DD-AACD-01A	0 years, male, asian, stage:Stage I, dead, 381 days	7.6
TCGA-DD-AADQ-01A	0 years, male, asian, stage:Stage II, alive, 436 days	7.1
TCGA-DD-AAVQ-01A	0 years, male, asian, stage:Stage I, alive, 2728 days	6.9
TCGA-DD-A1ED-01A	0 years, male, white, stage:Stage I, alive, 2301 days	6.4
TCGA-YA-A8S7-01A	0 years, male, white, stage:Stage IIIA, dead, 412 days	5.7
TCGA-DD-AACT-01A	0 years, female, asian, stage:Stage I, alive, 1562 days	5.6
TCGA-DD-A4NR-01A	0 years, female, white, stage:Stage I, dead, 9 days	5.6
TCGA-EP-A2KA-01A	0 years, female, white, stage:Stage IIIA, dead, 627 days	5.2
TCGA-5C-AAPD-01A	0 years, male, asian, stage:Stage II, alive, 20 days	5.1
TCGA-DD-AACX-01A	0 years, male, asian, stage:Stage II, alive, 170 days	5.0
TCGA-DD-A11C-01A	0 years, male, white, stage:Stage I, alive, 662 days	5.0
TCGA-DD-AAVP-01A	0 years, male, asian, stage:Stage I, alive, 2752 days	4.9
TCGA-BC-A110-01A	0 years, female, black or african american, stage:'--, dead, 2116 days	4.8
TCGA-DD-A73A-01A	0 years, male, white, stage:Stage I, alive, 728 days	4.4
TCGA-G3-A25X-01A	0 years, male, asian, stage:Stage II, alive, 1779 days	4.3
TCGA-DD-A73F-01A	0 years, female, white, stage:Stage I, alive, 1085 days	4.2
TCGA-GJ-A6C0-01A	0 years, female, white, stage:Stage II, dead, 31 days	4.2
TCGA-ED-A7XO-01A	0 years, male, asian, stage:Stage IIIA, alive, 427 days	4.1
TCGA-CC-5260-01A	0 years, female, asian, stage:Stage IIIC, dead, 87 days	4.0
TCGA-ED-A7XP-01A	0 years, female, asian, stage:Stage II, alive, 400 days	4.0
TCGA-BC-A217-01A	0 years, female, white, stage:Stage II, dead, 1397 days	3.9
TCGA-2Y-A9GV-01A	0 years, female, white, stage:Stage I, dead, 2532 days	3.7
TCGA-CC-A3MB-01A	0 years, male, asian, stage:Stage IIIA, dead, 315 days	3.6
TCGA-XR-A8TD-01A	0 years, female, white, stage:Stage IIIB, alive, 1030 days	3.5
TCGA-KR-A7K0-01A	0 years, male, white, stage:Stage I, dead, 65 days	3.5
TCGA-2Y-A9GX-01A	0 years, male, white, stage:Stage I, alive, 2442 days	3.3
TCGA-UB-A7MD-01A	0 years, male, black or african american, stage:Stage I, dead, 52 days	3.2
TCGA-EP-A26S-01A	0 years, male, white, stage:Stage I, alive, 608 days	3.2
TCGA-DD-AACB-01A	0 years, female, asian, stage:Stage I, alive, 2324 days	3.2
TCGA-CC-A8HS-01A	0 years, male, asian, stage:Stage IIIC, dead, 300 days	3.2
TCGA-DD-AAEG-01A	0 years, female, asian, stage:Stage I, alive, 719 days	3.2
TCGA-CC-5262-01A	0 years, male, asian, stage:Stage IIIC, dead, 103 days	3.1
TCGA-DD-AAE2-01A	0 years, male, asian, stage:Stage I, alive, 638 days	3.1
TCGA-UB-AA0U-01A	0 years, male, white, stage:Stage II, alive, 327 days	3.0
TCGA-DD-AACL-01A	0 years, female, asian, stage:Stage I, dead, 107 days	3.0
TCGA-NI-A8LF-01A	0 years, male, white, stage:Stage I, alive, 799 days	2.9
TCGA-5R-AA1C-01A	0 years, male, white, stage:Stage II, alive, 520 days	2.9
TCGA-DD-AAE1-01A	0 years, male, asian, stage:Stage I, alive, 552 days	2.9
TCGA-CC-A5UE-01A	0 years, male, asian, stage:Stage IIIB, dead, 272 days	2.9
TCGA-G3-AAV7-01A	0 years, male, asian, stage:Stage II, alive, 361 days	2.8
TCGA-DD-A1EC-01A	0 years, female, white, stage:Stage I, alive, 602 days	2.8
TCGA-ZP-A9D2-01A	0 years, male, white, stage:'--, dead, 765 days	2.8
TCGA-BC-A69H-01A	0 years, male, white, stage:Stage II, alive, 444 days	2.7
TCGA-2Y-A9H0-01A	0 years, male, white, stage:Stage IIIA, alive, 3675 days	2.7
TCGA-KR-A7K7-01A	0 years, female, white, stage:Stage II, alive, 951 days	2.6
TCGA-MR-A8JO-01A	0 years, male, white, stage:Stage I, alive, 330 days	2.6
TCGA-DD-AAW1-01A	0 years, male, asian, stage:Stage IIIA, alive, 1989 days	2.6
TCGA-GJ-A9DB-01A	0 years, male, white, stage:Stage I, dead, 67 days	2.6
TCGA-BC-A10Q-01A	0 years, female, white, stage:'--, dead, 1135 days	2.5
TCGA-G3-A5SJ-01A	0 years, male, white, stage:Stage I, alive, 698 days	2.4
TCGA-FV-A3I0-01A	0 years, female, white, stage:Stage II, alive, 848 days	2.4
TCGA-BC-A216-01A	0 years, female, white, stage:Stage IIIA, alive, 1351 days	2.3
TCGA-ED-A4XI-01A	0 years, male, asian, stage:Stage II, alive, 819 days	2.3
TCGA-CC-A5UD-01A	0 years, male, asian, stage:Stage IIIA, dead, 304 days	2.3
TCGA-DD-AAEI-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	2.3
TCGA-K7-AAU7-01A	0 years, male, white, stage:Stage II, alive, 359 days	2.3
TCGA-UB-AA0V-01A	0 years, female, white, stage:Stage I, alive, 314 days	2.1
TCGA-DD-AACZ-01A	0 years, female, asian, stage:Stage I, dead, 171 days	2.0
TCGA-HP-A5N0-01A	0 years, female, stage:'--, dead, 752 days	2.0
TCGA-DD-A4NP-01A	0 years, male, white, stage:Stage I, alive, 3308 days	2.0
TCGA-CC-A9FW-01A	0 years, male, asian, stage:Stage IIIA, alive, 248 days	1.9
TCGA-RC-A7S9-01A	0 years, female, asian, stage:Stage I, alive, 640 days	1.9
TCGA-ZS-A9CF-01A	0 years, male, white, stage:Stage II, alive, 2412 days	1.8
TCGA-CC-A9FS-01A	0 years, male, asian, stage:Stage II, alive, 211 days	1.8
TCGA-CC-5263-01A	0 years, male, asian, stage:Stage IIIA, dead, 129 days	1.8
TCGA-DD-A1EA-01A	0 years, male, asian, stage:Stage II, alive, 2415 days	1.8
TCGA-DD-AADI-01A	0 years, female, asian, stage:Stage I, alive, 1085 days	1.8
TCGA-DD-A1EJ-01A	0 years, female, white, stage:Stage IIIC, dead, 1005 days	1.6
TCGA-DD-AADB-01A	0 years, male, asian, stage:Stage I, alive, 1242 days	1.6
TCGA-DD-AACH-01A	0 years, male, asian, stage:Stage II, dead, 195 days	1.6
TCGA-G3-AAV1-01A	0 years, male, asian, stage:Stage IIIC, dead, 359 days	1.6
TCGA-DD-A1EI-01A	0 years, male, asian, stage:Stage I, alive, 183 days	1.5
TCGA-DD-AAEE-01A	0 years, male, asian, stage:Stage I, alive, 810 days	1.5
TCGA-G3-A3CH-01A	0 years, male, asian, stage:Stage IIIA, alive, 780 days	1.5
TCGA-EP-A12J-01A	0 years, male, black or african american, stage:Stage I, alive, 570 days	1.5
TCGA-ED-A97K-01A	0 years, male, asian, stage:Stage IIIA, alive, 6 days	1.5
TCGA-DD-AADR-01A	0 years, male, asian, stage:Stage I, alive, 2028 days	1.5
TCGA-DD-AADW-01A	0 years, male, asian, stage:Stage I, alive, 587 days	1.5
TCGA-BC-A10S-01A	0 years, male, white, stage:'--, dead, 1423 days	1.4
TCGA-DD-AAD2-01A	0 years, male, asian, stage:Stage I, alive, 658 days	1.4
TCGA-XR-A8TC-01A	0 years, female, white, stage:Stage I, alive, 1339 days	1.4
TCGA-DD-A4NL-01A	0 years, male, white, stage:Stage I, alive, 1711 days	1.3
TCGA-DD-AA3A-01A	0 years, female, white, stage:Stage I, dead, 410 days	1.3
TCGA-ZS-A9CG-01A	0 years, male, white, stage:Stage II, alive, 341 days	1.3
TCGA-G3-A7M9-01A	0 years, male, white, stage:Stage IIIB, dead, 56 days	1.3
TCGA-5C-A9VG-01A	0 years, male, white, stage:Stage II, alive, 328 days	1.3
TCGA-BC-A10Y-01A	0 years, male, white, stage:'--, dead, 711 days	1.3
TCGA-CC-A7IG-01A	0 years, male, asian, stage:Stage II, dead, 299 days	1.3
TCGA-RC-A6M6-01A	0 years, male, white, stage:Stage II, alive, 9 days	1.3
TCGA-G3-AAV2-01A	0 years, male, white, stage:Stage I, alive, 372 days	1.2
TCGA-5R-AA1D-01A	0 years, female, white, stage:Stage IIIA, alive, 449 days	1.2
TCGA-DD-A4NQ-01A	0 years, male, white, stage:Stage II, dead, 373 days	1.2
TCGA-CC-A5UC-01A	0 years, male, asian, stage:Stage IIIA, dead, 347 days	1.2
TCGA-CC-A7IE-01A	0 years, male, asian, stage:Stage IIIA, dead, 217 days	1.2
TCGA-ZP-A9D1-01A	0 years, female, white, stage:'--, alive, 21 days	1.2
TCGA-ED-A7PX-01A	0 years, female, asian, stage:Stage II, alive, 6 days	1.1
TCGA-DD-A1EB-01A	0 years, female, stage:Stage I, alive, 2017 days	1.1
TCGA-G3-A3CK-01A	0 years, male, asian, stage:Stage I, alive, 585 days	1.1
TCGA-ED-A8O6-01A	0 years, female, asian, stage:Stage IIIA, dead, 56 days	1.1
TCGA-G3-A7M6-01A	0 years, female, white, stage:Stage I, alive, 632 days	1.1
TCGA-DD-AAE7-01A	0 years, male, asian, stage:Stage I, alive, 644 days	1.1
TCGA-DD-AADP-01A	0 years, male, asian, stage:Stage I, alive, 458 days	1.1
TCGA-DD-AADJ-01A	0 years, female, asian, stage:Stage I, alive, 1066 days	1.1
TCGA-DD-A116-01A	0 years, male, asian, stage:Stage IIIA, dead, 1622 days	1.1
TCGA-FV-A3R2-01A	0 years, male, white, stage:Stage I, dead, 194 days	1.0
TCGA-DD-AAVX-01A	0 years, male, asian, stage:Stage II, alive, 1718 days	1.0
TCGA-RC-A7SB-01A	0 years, male, asian, stage:Stage II, alive, 588 days	1.0
TCGA-DD-A113-01A	0 years, female, white, stage:Stage II, alive, 2425 days	1.0
TCGA-DD-A3A5-01A	0 years, female, white, stage:Stage III, dead, 3125 days	1.0
TCGA-G3-AAV5-01A	0 years, male, white, stage:Stage II, alive, 354 days	1.0
TCGA-DD-A3A1-01A	0 years, male, stage:Stage IIIA, dead, 233 days	1.0
TCGA-NI-A4U2-01A	0 years, male, white, stage:Stage IIIA, dead, 1791 days	1.0
TCGA-DD-AAD5-01A	0 years, male, asian, stage:Stage I, alive, 1345 days	0.9
TCGA-DD-AAE4-01A	0 years, female, asian, stage:Stage I, alive, 608 days	0.9
TCGA-DD-AAEA-01A	0 years, male, asian, stage:Stage I, alive, 575 days	0.9
TCGA-DD-A1EF-01A	0 years, female, white, stage:Stage I, dead, 394 days	0.9
TCGA-DD-AACE-01A	0 years, male, asian, stage:Stage I, alive, 2184 days	0.8
TCGA-DD-AAD3-01A	0 years, male, asian, stage:Stage I, alive, 1295 days	0.8
TCGA-DD-AAVS-01A	0 years, male, asian, stage:Stage I, alive, 1823 days	0.8
TCGA-DD-A114-01A	0 years, male, black or african american, stage:Stage II, dead, 1149 days	0.8
TCGA-PD-A5DF-01A	0 years, female, white, stage:Stage IIIB, dead, 639 days	0.8
TCGA-CC-A8HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 140 days	0.8
TCGA-XR-A8TF-01A	0 years, male, white, stage:Stage I, dead, 693 days	0.8
TCGA-DD-AADA-01A	0 years, female, asian, stage:Stage I, alive, 1233 days	0.7
TCGA-ED-A7PY-01A	0 years, female, asian, stage:Stage II, alive, 390 days	0.7
TCGA-DD-A73E-01A	0 years, male, white, stage:Stage I, alive, 44 days	0.7
TCGA-EP-A2KC-01A	0 years, male, black or african american, stage:Stage I, dead, 19 days	0.7
TCGA-DD-AACS-01A	0 years, male, asian, stage:Stage I, alive, 1804 days	0.7
TCGA-BD-A3ER-01A	0 years, male, white, stage:Stage II, alive, 1115 days	0.7
TCGA-MI-A75G-01A	0 years, male, white, stage:Stage II, alive, 698 days	0.7
TCGA-DD-A73G-01A	0 years, female, white, stage:Stage I, alive, 3478 days	0.7
TCGA-KR-A7K8-01A	0 years, male, stage:Stage I, alive, 906 days	0.7
TCGA-FV-A2QR-01A	0 years, male, white, stage:Stage I, dead, 581 days	0.7
TCGA-FV-A495-01A	0 years, female, white, stage:Stage II, alive, 1 days	0.7
TCGA-RC-A6M5-01A	0 years, female, white, stage:Stage IVA, alive, 15 days	0.6
TCGA-CC-A7IL-01A	0 years, male, asian, stage:Stage IIIA, dead, 278 days	0.6
TCGA-QA-A7B7-01A	0 years, male, black or african american, stage:Stage II, alive, 94 days	0.6
TCGA-G3-A7M5-01A	0 years, male, asian, stage:Stage I, alive, 447 days	0.6
TCGA-KR-A7K2-01A	0 years, male, white, stage:Stage I, alive, 829 days	0.6
TCGA-DD-A4NV-01A	0 years, male, white, stage:Stage IIIA, alive, 2398 days	0.6
TCGA-G3-A25Z-01A	0 years, male, asian, stage:Stage I, alive, 655 days	0.6
TCGA-ZP-A9CV-01A	0 years, male, white, stage:'--, dead, 1088 days	0.5
TCGA-CC-A8HV-01A	0 years, female, asian, stage:Stage II, dead, 279 days	0.5
TCGA-2Y-A9GZ-01A	0 years, female, white, stage:Stage II, dead, 848 days	0.5
TCGA-LG-A6GG-01A	0 years, female, white, stage:Stage II, alive, 387 days	0.5
TCGA-DD-AACY-01A	0 years, male, asian, stage:Stage I, alive, 1450 days	0.5
TCGA-DD-A4ND-01A	0 years, female, white, stage:Stage I, alive, 2746 days	0.5
TCGA-BC-A3KF-01A	0 years, female, white, stage:Stage I, alive, 8 days	0.5
TCGA-CC-A7IF-01A	0 years, male, asian, stage:Stage IIIA, dead, 649 days	0.5
TCGA-DD-AADL-01A	0 years, male, asian, stage:Stage I, alive, 636 days	0.4
TCGA-DD-AADK-01A	0 years, female, asian, stage:Stage II, alive, 1049 days	0.4
TCGA-DD-AACP-01A	0 years, male, asian, stage:Stage I, alive, 415 days	0.4
TCGA-DD-AAD1-01A	0 years, female, asian, stage:Stage I, alive, 564 days	0.4
TCGA-DD-AADC-01A	0 years, male, asian, stage:Stage I, dead, 425 days	0.4
TCGA-BC-A10U-01A	0 years, male, white, stage:'--, dead, 837 days	0.4
TCGA-DD-AACF-01A	0 years, male, asian, stage:Stage I, dead, 365 days	0.4
TCGA-DD-A4NB-01A	0 years, male, white, stage:Stage I, alive, 989 days	0.4
TCGA-DD-AAVU-01A	0 years, male, asian, stage:Stage II, alive, 2202 days	0.4
TCGA-BC-A69I-01A	0 years, male, white, stage:Stage I, alive, 387 days	0.4
TCGA-ED-A8O5-01A	0 years, female, asian, stage:Stage IIIA, alive, 406 days	0.4
TCGA-DD-AAE3-01A	0 years, male, asian, stage:Stage I, alive, 566 days	0.4
TCGA-DD-A39X-01A	0 years, female, white, stage:Stage I, dead, 1694 days	0.4
TCGA-2Y-A9GS-01A	0 years, male, white, stage:'--, dead, 724 days	0.4
TCGA-DD-AADG-01A	0 years, male, asian, stage:Stage IIIA, alive, 1145 days	0.4
TCGA-DD-A1EG-01A	0 years, male, white, stage:Stage I, dead, 1372 days	0.4
TCGA-G3-AAV0-01A	0 years, male, asian, stage:Stage I, alive, 476 days	0.4
TCGA-DD-A4NI-01A	0 years, male, white, stage:Stage II, alive, 816 days	0.3
TCGA-G3-A3CJ-01A	0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days	0.3
TCGA-BC-A5W4-01A	0 years, male, white, stage:Stage IIIA, dead, 547 days	0.3
TCGA-DD-AACU-01A	0 years, male, asian, stage:Stage I, alive, 1567 days	0.3
TCGA-DD-AADV-01A	0 years, male, asian, stage:Stage I, alive, 574 days	0.3
TCGA-DD-A1EH-01A	0 years, male, white, stage:Stage III, alive, 1495 days	0.3
TCGA-DD-AAC8-01A	0 years, male, asian, stage:Stage I, dead, 16 days	0.3
TCGA-K7-A5RF-01A	0 years, male, white, stage:Stage I, alive, 631 days	0.3
TCGA-ZP-A9D0-01A	0 years, female, black or african american, stage:'--, alive, 1091 days	0.3
TCGA-DD-AACG-01A	0 years, male, asian, stage:Stage II, dead, 469 days	0.3
TCGA-DD-A3A8-01A	0 years, male, white, stage:Stage II, dead, 11 days	0.3
TCGA-DD-A4NH-01A	0 years, female, white, stage:Stage IIIB, alive, 917 days	0.3
TCGA-UB-A7MF-01A	0 years, male, white, stage:Stage IIIA, dead, 214 days	0.3
TCGA-DD-A39Z-01A	0 years, female, stage:Stage II, dead, 601 days	0.3
TCGA-DD-AACO-01A	0 years, male, asian, stage:Stage I, alive, 1876 days	0.2
TCGA-WX-AA44-01A	0 years, female, white, stage:Stage I, alive, 615 days	0.2
TCGA-ED-A7PZ-01A	0 years, male, asian, stage:Stage II, alive, 6 days	0.2
TCGA-DD-AACI-01A	0 years, male, asian, stage:Stage II, alive, 1618 days	0.2
TCGA-WJ-A86L-01A	0 years, female, white, stage:Stage I, alive, 345 days	0.2
TCGA-MI-A75E-01A	0 years, male, white, stage:Stage IIIC, alive, 507 days	0.2
TCGA-DD-AAW3-01A	0 years, male, asian, stage:Stage I, alive, 1633 days	0.2
TCGA-CC-A8HU-01A	0 years, female, asian, stage:Stage IIIA, dead, 344 days	0.2
TCGA-2Y-A9GU-01A	0 years, female, white, stage:Stage I, alive, 1939 days	0.2
TCGA-G3-AAV6-01A	0 years, female, white, stage:Stage IIIA, dead, 65 days	0.2
TCGA-CC-5264-01A	0 years, male, asian, stage:Stage IIIA, dead, 102 days	0.2
TCGA-ZP-A9D4-01A	0 years, female, white, stage:'--, alive, 395 days	0.2
TCGA-DD-A4NN-01A	0 years, female, white, stage:Stage I, dead, 899 days	0.2
TCGA-CC-A123-01A	0 years, female, asian, stage:Stage IIIA, alive, 219 days	0.2
TCGA-DD-A3A3-01A	0 years, male, asian, stage:Stage I, dead, 535 days	0.2
TCGA-RC-A7SH-01A	0 years, male, asian, stage:Stage II, alive, 468 days	0.2
TCGA-DD-AAE0-01A	0 years, female, asian, stage:Stage IIIA, alive, 555 days	0.2
TCGA-ES-A2HT-01A	0 years, male, black or african american, stage:Stage I, dead, 438 days	0.2
TCGA-WX-AA46-01A	0 years, male, white, stage:Stage II, alive, 756 days	0.2
TCGA-DD-A3A6-01A	0 years, female, white, stage:Stage II, dead, 3258 days	0.2
TCGA-FV-A4ZP-01A	0 years, male, white, stage:Stage IIIA, dead, 2486 days	0.1
TCGA-DD-AAD0-01A	0 years, female, asian, stage:Stage I, alive, 137 days	0.1
TCGA-DD-A1EK-01A	0 years, female, white, stage:Stage IVB, dead, 558 days	0.1
TCGA-2Y-A9GY-01A	0 years, female, white, stage:Stage II, dead, 757 days	0.1
TCGA-CC-A7IK-01A	0 years, male, asian, stage:Stage IIIA, dead, 262 days	0.1
TCGA-DD-AADN-01A	0 years, male, asian, stage:Stage I, alive, 898 days	0.1
TCGA-DD-AADU-01A	0 years, male, asian, stage:Stage II, alive, 554 days	0.1
TCGA-DD-AACQ-01A	0 years, male, asian, stage:Stage II, dead, 432 days	0.1
TCGA-DD-A4NF-01A	0 years, male, white, stage:Stage I, alive, 942 days	0.1
TCGA-WQ-A9G7-01A	0 years, female, white, stage:'--, alive, 30 days	0.1
TCGA-DD-AADM-01A	0 years, male, asian, stage:Stage II, dead, 12 days	0.1
TCGA-DD-AAD6-01A	0 years, male, asian, stage:Stage IIIA, alive, 672 days	0.1
TCGA-G3-A7M7-01A	0 years, male, white, stage:Stage I, alive, 361 days	0.1
TCGA-HP-A5MZ-01A	0 years, male, stage:Stage I, dead, 91 days	0.1
TCGA-GJ-A3OU-01A	0 years, male, white, stage:Stage I, alive, 879 days	0.1
TCGA-BC-A10X-01A	0 years, female, white, stage:Stage IIIA, dead, 770 days	0.1
TCGA-BC-A10R-01A	0 years, female, white, stage:'--, dead, 308 days	0.1
TCGA-BC-A10W-01A	0 years, male, asian, stage:'--, dead, 91 days	0.1
TCGA-DD-AAEB-01A	0 years, male, asian, stage:Stage I, alive, 478 days	0.1
TCGA-DD-AADY-01A	0 years, female, asian, stage:Stage I, alive, 555 days	0.1
TCGA-BC-A3KG-01A	0 years, female, white, stage:Stage II, alive, 680 days	0.1
TCGA-BD-A3EP-01A	0 years, female, black or african american, stage:Stage I, alive, 409 days	0.1
TCGA-DD-A4NA-01A	0 years, female, white, stage:Stage IIIC, alive, 1008 days	0.1
TCGA-DD-A4NG-01A	0 years, male, white, stage:Stage IIIA, dead, 802 days	0.0
TCGA-UB-A7MB-01A	0 years, male, white, stage:Stage II, alive, 601 days	0.0
TCGA-G3-A25T-01A	0 years, female, white, stage:Stage IIIA, alive, 1553 days	0.0
TCGA-2Y-A9HB-01A	0 years, male, stage:Stage I, alive, 260 days	0.0
TCGA-UB-A7ME-01A	0 years, male, asian, stage:Stage I, alive, 486 days	0.0
TCGA-WX-AA47-01A	0 years, female, white, stage:Stage IIIA, dead, 556 days	0.0
TCGA-DD-AACJ-01A	0 years, male, asian, stage:Stage II, alive, 2102 days	0.0
TCGA-G3-A5SI-01A	0 years, male, asian, stage:Stage II, dead, 768 days	0.0
TCGA-DD-AAW0-01A	0 years, male, asian, stage:Stage I, alive, 2015 days	0.0
TCGA-FV-A3I1-01A	0 years, female, white, stage:Stage II, dead, 247 days	0.0
TCGA-ED-A627-01A	0 years, male, white, stage:Stage I, alive, 423 days	0.0
TCGA-DD-A11B-01A	0 years, male, white, stage:Stage I, dead, 14 days	0.0
TCGA-RC-A7SK-01A	0 years, male, asian, stage:Stage I, alive, 472 days	0.0
TCGA-BC-A10Z-01A	0 years, female, white, stage:Stage I, dead, 34 days	0.0
TCGA-ZS-A9CE-01A	0 years, female, white, stage:Stage II, alive, 1241 days	0.0
TCGA-RC-A6M4-01A	0 years, female, white, stage:Stage IIIA, alive, 22 days	0.0
TCGA-BD-A2L6-01A	0 years, male, white, stage:'--, alive, 1363 days	0.0
TCGA-DD-AAE6-01A	0 years, female, asian, stage:Stage I, alive, 141 days	0.0
TCGA-2Y-A9HA-01A	0 years, male, white, stage:Stage II, dead, 36 days	0.0
TCGA-DD-AACW-01A	0 years, male, asian, stage:Stage I, alive, 1424 days	0.0
TCGA-CC-5259-01A	0 years, female, asian, stage:Stage IIIC, alive, 250 days	0.0
TCGA-DD-A115-01A	0 years, male, white, stage:Stage IIIA, dead, 2542 days	0.0
TCGA-DD-A73B-01A	0 years, female, white, stage:Stage I, dead, 283 days	0.0
TCGA-2Y-A9H3-01A	0 years, male, white, stage:Stage II, alive, 1516 days	0.0
TCGA-DD-A1EL-01A	0 years, male, black or african american, stage:Stage II, dead, 415 days	0.0
TCGA-DD-A3A7-01A	0 years, male, stage:Stage IIIB, dead, 419 days	0.0
TCGA-DD-A11D-01A	0 years, female, white, stage:Stage I, dead, 1560 days	0.0
TCGA-CC-5258-01A	0 years, male, asian, stage:Stage II, dead, 129 days	0.0
TCGA-2Y-A9H5-01A	0 years, female, white, stage:Stage I, dead, 555 days	0.0
TCGA-DD-AAD8-01A	0 years, female, asian, stage:Stage I, alive, 1219 days	0.0
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter plotⁱ The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red. The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off". Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation. Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient. & Survival analysisⁱ Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.

LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)

Number of samples

330

Samples

Sample ID	Sample type	nRPX
343	Tumor	1.6
493	Tumor	1.5
467	Tumor	1.4
195	Tumor	1.4
311	Tumor	1.3
395	Tumor	1.3
262	Normal	1.2
557	Tumor	1.2
385	Tumor	1.2
778	Normal	1.0
478	Normal	1.0
724	Normal	1.0
224	Normal	1.0
188	Normal	1.0
211	Tumor	0.9
516	Normal	0.8
663	Tumor	0.8
386	Normal	0.8
696	Normal	0.8
383	Tumor	0.8
213	Tumor	0.8
817	Tumor	0.7
344	Normal	0.7
312	Normal	0.7
661	Tumor	0.7
535	Tumor	0.7
1031	Tumor	0.7
223	Tumor	0.6
914	Normal	0.6
823	Tumor	0.6
727	Tumor	0.6
963	Tumor	0.6
851	Tumor	0.6
272	Normal	0.6
494	Normal	0.6
857	Tumor	0.6
672	Normal	0.6
192	Normal	0.6
628	Normal	0.6
421	Tumor	0.6
487	Tumor	0.5
818	Normal	0.5
867	Tumor	0.5
231	Tumor	0.5
728	Normal	0.5
878	Normal	0.5
952	Normal	0.4
434	Normal	0.4
852	Normal	0.4
558	Normal	0.4
138	Normal	0.4
384	Normal	0.4
925	Tumor	0.4
426	Normal	0.4
536	Normal	0.4
1042	Normal	0.4
913	Tumor	0.4
861	Tumor	0.4
111	Normal	0.4
212	Normal	0.4
742	Normal	0.3
525	Tumor	0.3
146	Normal	0.3
498	Normal	0.3
868	Normal	0.3
984	Normal	0.3
816	Normal	0.3
554	Normal	0.3
355	Tumor	0.3
126	Normal	0.3
978	Normal	0.3
196	Normal	0.3
492	Normal	0.3
161	Tumor	0.3
721	Tumor	0.3
538	Normal	0.3
695	Tumor	0.3
937	Tumor	0.2
528	Normal	0.2
214	Normal	0.2
391	Tumor	0.2
137	Tumor	0.2
881	Tumor	0.2
926	Normal	0.2
187	Tumor	0.2
422	Normal	0.2
666	Normal	0.2
943	Tumor	0.2
1032	Normal	0.1
141	Tumor	0.1
284	Normal	0.1
297	Tumor	0.1
662	Normal	0.1
142	Normal	0.1
375	Tumor	0.1
744	Normal	0.1
814	Normal	0.1
488	Normal	0.1
463	Tumor	0.1
956	Normal	0.1
362	Normal	0.1
464	Normal	0.1
466	Normal	0.1
258	Normal	0.1
824	Normal	0.1
278	Normal	0.1
261	Tumor	0.1
545	Tumor	0.1
815	Tumor	0.0
268	Normal	0.0
1015	Tumor	0.0
553	Tumor	0.0
955	Tumor	0.0
468	Normal	0.0
546	Normal	0.0
686	Normal	0.0
145	Tumor	0.0
412	Normal	0.0
917	Tumor	0.0
642	Normal	0.0
271	Tumor	0.0
685	Tumor	0.0
964	Normal	0.0
1046	Normal	0.0
954	Normal	0.0
387	Tumor	0.0
128	Normal	0.0
983	Tumor	0.0
922	Normal	-0.1
951	Tumor	-0.1
423	Tumor	-0.1
738	Normal	-0.1
641	Tumor	-0.1
1045	Tumor	-0.1
432	Normal	-0.1
716	Normal	-0.1
882	Normal	-0.1
953	Tumor	-0.1
392	Normal	-0.1
363	Tumor	-0.1
396	Normal	-0.1
114	Normal	-0.1
636	Normal	-0.1
217	Tumor	-0.1
286	Normal	-0.1
415	Tumor	-0.1
491	Tumor	-0.1
665	Tumor	-0.1
563	Tumor	-0.1
524	Normal	-0.1
723	Tumor	-0.2
574	Normal	-0.2
944	Normal	-0.2
394	Normal	-0.2
526	Normal	-0.2
515	Tumor	-0.2
573	Tumor	-0.2
777	Tumor	-0.2
124	Normal	-0.2
446	Normal	-0.2
191	Tumor	-0.2
514	Normal	-0.2
862	Normal	-0.2
342	Normal	-0.2
1016	Normal	-0.2
136	Normal	-0.2
366	Normal	-0.2
715	Tumor	-0.2
671	Tumor	-0.2
883	Tumor	-0.2
132	Normal	-0.2
424	Normal	-0.2
1028	Normal	-0.2
713	Tumor	-0.2
918	Normal	-0.2
444	Normal	-0.2
722	Normal	-0.2
162	Normal	-0.2
113	Tumor	-0.2
365	Tumor	-0.3
447	Tumor	-0.3
1041	Tumor	-0.3
127	Tumor	-0.3
474	Normal	-0.3
298	Normal	-0.3
456	Normal	-0.3
1044	Normal	-0.3
698	Normal	-0.3
218	Normal	-0.3
864	Normal	-0.3
388	Normal	-0.3
976	Normal	-0.3
858	Normal	-0.3
483	Tumor	-0.3
367	Tumor	-0.3
627	Tumor	-0.3
874	Normal	-0.3
924	Normal	-0.3
232	Normal	-0.3
368	Normal	-0.4
884	Normal	-0.4
664	Normal	-0.4
968	Normal	-0.4
741	Tumor	-0.4
285	Tumor	-0.4
277	Tumor	-0.4
484	Normal	-0.4
1022	Normal	-0.4
1043	Tumor	-0.4
185	Tumor	-0.4
341	Tumor	-0.4
352	Normal	-0.4
425	Tumor	-0.4
1014	Normal	-0.4
477	Tumor	-0.4
518	Normal	-0.4
461	Tumor	-0.4
912	Normal	-0.4
112	Tumor	-0.4
283	Tumor	-0.4
228	Normal	-0.4
916	Normal	-0.5
267	Tumor	-0.5
364	Normal	-0.5
966	Normal	-0.5
448	Normal	-0.5
714	Normal	-0.5
427	Tumor	-0.5
411	Tumor	-0.5
786	Normal	-0.5
393	Tumor	-0.5
376	Normal	-0.5
915	Tumor	-0.5
353	Tumor	-0.5
358	Normal	-0.5
465	Tumor	-0.5
564	Normal	-0.5
452	Normal	-0.5
958	Normal	-0.5
416	Normal	-0.5
135	Tumor	-0.5
938	Normal	-0.5
328	Normal	-0.5
1026	Normal	-0.5
327	Tumor	-0.5
863	Tumor	-0.6
455	Tumor	-0.6
571	Tumor	-0.6
227	Tumor	-0.6
982	Normal	-0.6
361	Tumor	-0.6
471	Tumor	-0.6
568	Normal	-0.6
257	Tumor	-0.6
975	Tumor	-0.6
697	Tumor	-0.6
497	Tumor	-0.6
534	Normal	-0.6
356	Normal	-0.6
354	Normal	-0.6
756	Normal	-0.6
572	Normal	-0.6
332	Normal	-0.7
414	Normal	-0.7
1027	Tumor	-0.7
813	Tumor	-0.7
473	Tumor	-0.7
866	Normal	-0.7
451	Tumor	-0.7
537	Tumor	-0.7
222	Normal	-0.7
482	Normal	-0.7
873	Tumor	-0.7
433	Tumor	-0.8
431	Tumor	-0.8
877	Tumor	-0.8
148	Normal	-0.8
413	Tumor	-0.8
472	Normal	-0.8
618	Normal	-0.8
462	Normal	-0.8
921	Tumor	-0.8
1025	Tumor	-0.8
746	Normal	-0.8
647	Tumor	-0.8
172	Normal	-0.8
443	Tumor	-0.8
648	Normal	-0.8
445	Tumor	-0.9
125	Tumor	-0.9
785	Tumor	-0.9
755	Tumor	-0.9
221	Tumor	-0.9
1021	Tumor	-0.9
513	Tumor	-0.9
428	Normal	-0.9
131	Tumor	-0.9
523	Tumor	-0.9
911	Tumor	-0.9
617	Tumor	-0.9
1013	Tumor	-0.9
981	Tumor	-0.9
527	Tumor	-0.9
616	Normal	-1.0
977	Tumor	-1.0
481	Tumor	-1.0
436	Normal	-1.0
957	Tumor	-1.0
923	Tumor	-1.0
314	Normal	-1.0
331	Tumor	-1.1
635	Tumor	-1.1
147	Tumor	-1.1
186	Normal	-1.1
533	Tumor	-1.1
615	Tumor	-1.1
517	Tumor	-1.1
967	Tumor	-1.2
865	Tumor	-1.2
357	Tumor	-1.3
123	Tumor	-1.3
567	Tumor	-1.3
737	Tumor	-1.3
965	Tumor	-1.3
351	Tumor	-1.4
745	Tumor	-1.4
171	Tumor	-1.5
313	Tumor	-1.6
435	Tumor	-1.6
743	Tumor	-2.0
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LIVER CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA043151
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Cholangiocarcinoma
Carcinoma, Hepatocellular, NOS