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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OGA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
45.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
32.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
32.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
30.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
30.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
28.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
27.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
26.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
26.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
26.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
26.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
24.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
23.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
23.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
22.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
21.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
19.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
17.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.2
741
Tumor
1.0
123
Tumor
1.0
921
Tumor
0.9
391
Tumor
0.7
271
Tumor
0.7
925
Tumor
0.7
267
Tumor
0.7
911
Tumor
0.6
465
Tumor
0.6
981
Tumor
0.6
965
Tumor
0.6
477
Tumor
0.6
127
Tumor
0.6
231
Tumor
0.5
937
Tumor
0.5
353
Tumor
0.5
1031
Tumor
0.5
131
Tumor
0.5
481
Tumor
0.5
261
Tumor
0.5
695
Tumor
0.5
537
Tumor
0.5
553
Tumor
0.4
221
Tumor
0.4
1025
Tumor
0.4
227
Tumor
0.4
755
Tumor
0.4
351
Tumor
0.4
471
Tumor
0.4
567
Tumor
0.4
861
Tumor
0.4
147
Tumor
0.4
171
Tumor
0.4
452
Normal
0.3
951
Tumor
0.3
223
Tumor
0.3
912
Normal
0.3
451
Tumor
0.3
883
Tumor
0.3
132
Normal
0.3
538
Normal
0.3
924
Normal
0.3
1043
Tumor
0.2
816
Normal
0.2
126
Normal
0.2
431
Tumor
0.2
331
Tumor
0.2
617
Tumor
0.2
715
Tumor
0.2
366
Normal
0.2
443
Tumor
0.2
864
Normal
0.2
128
Normal
0.2
744
Normal
0.2
1026
Normal
0.2
422
Normal
0.2
272
Normal
0.2
232
Normal
0.2
714
Normal
0.2
268
Normal
0.2
415
Tumor
0.2
615
Tumor
0.2
918
Normal
0.2
742
Normal
0.1
433
Tumor
0.1
114
Normal
0.1
881
Tumor
0.1
262
Normal
0.1
851
Tumor
0.1
356
Normal
0.1
647
Tumor
0.1
228
Normal
0.1
425
Tumor
0.1
557
Tumor
0.1
954
Normal
0.1
915
Tumor
0.1
258
Normal
0.1
426
Normal
0.1
963
Tumor
0.1
914
Normal
0.1
728
Normal
0.1
696
Normal
0.1
716
Normal
0.1
196
Normal
0.1
113
Tumor
0.1
388
Normal
0.1
554
Normal
0.1
421
Tumor
0.1
341
Tumor
0.1
328
Normal
0.1
815
Tumor
0.1
1022
Normal
0.1
392
Normal
0.1
926
Normal
0.1
664
Normal
0.1
384
Normal
0.1
111
Normal
0.1
185
Tumor
0.1
738
Normal
0.1
455
Tumor
0.1
284
Normal
0.1
482
Normal
0.1
1028
Normal
0.1
745
Tumor
0.1
862
Normal
0.1
214
Normal
0.1
955
Tumor
0.1
518
Normal
0.1
435
Tumor
0.0
662
Normal
0.0
525
Tumor
0.0
474
Normal
0.0
224
Normal
0.0
1041
Tumor
0.0
737
Tumor
0.0
1042
Normal
0.0
186
Normal
0.0
362
Normal
0.0
145
Tumor
0.0
468
Normal
0.0
142
Normal
0.0
968
Normal
0.0
376
Normal
0.0
138
Normal
0.0
146
Normal
0.0
686
Normal
0.0
212
Normal
0.0
852
Normal
0.0
724
Normal
0.0
818
Normal
0.0
312
Normal
0.0
722
Normal
0.0
368
Normal
0.0
412
Normal
0.0
162
Normal
0.0
874
Normal
0.0
865
Tumor
0.0
278
Normal
0.0
1021
Tumor
0.0
574
Normal
0.0
666
Normal
0.0
873
Tumor
0.0
983
Tumor
0.0
188
Normal
0.0
746
Normal
0.0
817
Tumor
0.0
546
Normal
0.0
285
Tumor
0.0
494
Normal
0.0
456
Normal
0.0
882
Normal
0.0
367
Tumor
0.0
172
Normal
0.0
944
Normal
0.0
466
Normal
0.0
444
Normal
0.0
472
Normal
0.0
976
Normal
0.0
568
Normal
0.0
563
Tumor
0.0
958
Normal
0.0
517
Tumor
0.0
396
Normal
0.0
385
Tumor
0.0
916
Normal
0.0
572
Normal
0.0
922
Normal
0.0
564
Normal
0.0
363
Tumor
0.0
424
Normal
0.0
672
Normal
0.0
364
Normal
0.0
966
Normal
0.0
361
Tumor
0.0
483
Tumor
0.0
358
Normal
0.0
648
Normal
0.0
1016
Normal
0.0
868
Normal
0.0
413
Tumor
0.0
778
Normal
0.0
878
Normal
0.0
1032
Normal
0.0
478
Normal
0.0
723
Tumor
0.0
866
Normal
-0.1
756
Normal
-0.1
355
Tumor
-0.1
222
Normal
-0.1
112
Tumor
-0.1
136
Normal
-0.1
342
Normal
-0.1
327
Tumor
-0.1
352
Normal
-0.1
917
Tumor
-0.1
467
Tumor
-0.1
628
Normal
-0.1
727
Tumor
-0.1
462
Normal
-0.1
298
Normal
-0.1
286
Normal
-0.1
671
Tumor
-0.1
526
Normal
-0.1
956
Normal
-0.1
217
Tumor
-0.1
491
Tumor
-0.1
148
Normal
-0.1
436
Normal
-0.1
492
Normal
-0.1
484
Normal
-0.1
124
Normal
-0.1
463
Tumor
-0.1
434
Normal
-0.1
394
Normal
-0.1
984
Normal
-0.1
814
Normal
-0.1
636
Normal
-0.1
982
Normal
-0.1
858
Normal
-0.1
218
Normal
-0.1
283
Tumor
-0.1
665
Tumor
-0.1
386
Normal
-0.1
938
Normal
-0.1
642
Normal
-0.1
533
Tumor
-0.1
516
Normal
-0.1
1045
Tumor
-0.1
824
Normal
-0.1
528
Normal
-0.1
387
Tumor
-0.1
432
Normal
-0.1
354
Normal
-0.1
192
Normal
-0.1
635
Tumor
-0.1
952
Normal
-0.1
713
Tumor
-0.1
311
Tumor
-0.1
488
Normal
-0.1
571
Tumor
-0.1
964
Normal
-0.1
721
Tumor
-0.1
534
Normal
-0.1
187
Tumor
-0.1
1014
Normal
-0.1
414
Normal
-0.1
498
Normal
-0.2
332
Normal
-0.2
535
Tumor
-0.2
393
Tumor
-0.2
448
Normal
-0.2
297
Tumor
-0.2
884
Normal
-0.2
446
Normal
-0.2
977
Tumor
-0.2
416
Normal
-0.2
428
Normal
-0.2
344
Normal
-0.2
1046
Normal
-0.2
395
Tumor
-0.2
1044
Normal
-0.2
913
Tumor
-0.2
661
Tumor
-0.2
195
Tumor
-0.2
161
Tumor
-0.2
137
Tumor
-0.2
558
Normal
-0.2
461
Tumor
-0.2
978
Normal
-0.2
975
Tumor
-0.2
514
Normal
-0.2
545
Tumor
-0.2
191
Tumor
-0.2
618
Normal
-0.2
616
Normal
-0.2
125
Tumor
-0.2
641
Tumor
-0.2
375
Tumor
-0.2
698
Normal
-0.2
314
Normal
-0.2
487
Tumor
-0.2
957
Tumor
-0.2
1015
Tumor
-0.2
135
Tumor
-0.2
785
Tumor
-0.2
277
Tumor
-0.3
943
Tumor
-0.3
663
Tumor
-0.3
786
Normal
-0.3
877
Tumor
-0.3
524
Normal
-0.3
213
Tumor
-0.3
867
Tumor
-0.3
863
Tumor
-0.3
813
Tumor
-0.3
211
Tumor
-0.3
445
Tumor
-0.3
685
Tumor
-0.3
411
Tumor
-0.3
464
Normal
-0.3
536
Normal
-0.3
923
Tumor
-0.3
953
Tumor
-0.3
777
Tumor
-0.3
141
Tumor
-0.3
447
Tumor
-0.3
343
Tumor
-0.4
257
Tumor
-0.4
857
Tumor
-0.4
823
Tumor
-0.4
573
Tumor
-0.4
423
Tumor
-0.4
497
Tumor
-0.4
493
Tumor
-0.4
365
Tumor
-0.4
473
Tumor
-0.4
523
Tumor
-0.5
427
Tumor
-0.5
357
Tumor
-0.5
627
Tumor
-0.5
383
Tumor
-0.5
743
Tumor
-0.6
697
Tumor
-0.6
1013
Tumor
-0.6
513
Tumor
-0.6
515
Tumor
-0.7
1027
Tumor
-0.8
313
Tumor
-1.0
527
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.