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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UCKL1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
85.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
66.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
65.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
62.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
59.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
55.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
50.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
49.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
47.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
45.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
45.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
44.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
44.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
43.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
43.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
42.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
38.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
38.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
38.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
38.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
37.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
37.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
36.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
36.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
35.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
35.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
35.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
35.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
34.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
34.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
33.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
31.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
31.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
31.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
30.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
29.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
29.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
29.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
29.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
29.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
28.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
27.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
26.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
25.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
25.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
25.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
23.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
23.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
22.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
22.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
21.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
19.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
18.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
17.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
13.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UCKL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.0
Number of samples
231
Samples
Sample
Description
TPM
DO45259
0 years, male, NA, stage:3, alive, 330 days
57.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
53.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
46.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
44.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
42.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
42.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
41.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
41.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
40.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
40.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
37.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
37.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
37.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
36.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
36.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
36.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
35.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
35.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
35.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
35.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
32.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
32.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
31.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
31.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
31.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
30.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
30.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
30.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
28.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
26.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
25.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
23.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
22.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
16.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
16.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.4
965
Tumor
1.3
171
Tumor
1.3
231
Tumor
0.8
685
Tumor
0.8
313
Tumor
0.7
351
Tumor
0.7
123
Tumor
0.6
393
Tumor
0.6
513
Tumor
0.6
487
Tumor
0.5
385
Tumor
0.5
981
Tumor
0.5
724
Normal
0.5
921
Tumor
0.5
1015
Tumor
0.5
861
Tumor
0.5
357
Tumor
0.5
957
Tumor
0.5
451
Tumor
0.5
865
Tumor
0.5
967
Tumor
0.4
1021
Tumor
0.4
665
Tumor
0.4
777
Tumor
0.4
131
Tumor
0.4
147
Tumor
0.4
271
Tumor
0.4
883
Tumor
0.4
857
Tumor
0.4
425
Tumor
0.4
745
Tumor
0.4
483
Tumor
0.4
627
Tumor
0.4
545
Tumor
0.3
557
Tumor
0.3
785
Tumor
0.3
257
Tumor
0.3
697
Tumor
0.3
977
Tumor
0.3
361
Tumor
0.3
951
Tumor
0.3
671
Tumor
0.3
567
Tumor
0.3
663
Tumor
0.3
913
Tumor
0.3
161
Tumor
0.3
277
Tumor
0.3
481
Tumor
0.3
571
Tumor
0.3
727
Tumor
0.3
695
Tumor
0.3
537
Tumor
0.3
217
Tumor
0.3
881
Tumor
0.3
431
Tumor
0.3
353
Tumor
0.2
473
Tumor
0.2
411
Tumor
0.2
395
Tumor
0.2
463
Tumor
0.2
815
Tumor
0.2
647
Tumor
0.2
365
Tumor
0.2
491
Tumor
0.2
497
Tumor
0.2
471
Tumor
0.2
851
Tumor
0.2
514
Normal
0.2
354
Normal
0.2
943
Tumor
0.2
1031
Tumor
0.2
1027
Tumor
0.2
615
Tumor
0.2
515
Tumor
0.2
443
Tumor
0.2
331
Tumor
0.2
261
Tumor
0.2
911
Tumor
0.2
358
Normal
0.2
1043
Tumor
0.2
467
Tumor
0.2
661
Tumor
0.2
618
Normal
0.2
493
Tumor
0.2
628
Normal
0.2
877
Tumor
0.2
423
Tumor
0.1
341
Tumor
0.1
915
Tumor
0.1
477
Tumor
0.1
923
Tumor
0.1
964
Normal
0.1
533
Tumor
0.1
375
Tumor
0.1
746
Normal
0.1
137
Tumor
0.1
863
Tumor
0.1
554
Normal
0.1
525
Tumor
0.1
314
Normal
0.1
722
Normal
0.1
983
Tumor
0.1
553
Tumor
0.1
686
Normal
0.1
956
Normal
0.1
755
Tumor
0.1
873
Tumor
0.1
966
Normal
0.1
546
Normal
0.1
527
Tumor
0.1
148
Normal
0.1
882
Normal
0.1
642
Normal
0.1
523
Tumor
0.1
283
Tumor
0.1
867
Tumor
0.1
756
Normal
0.1
464
Normal
0.1
456
Normal
0.1
383
Tumor
0.1
367
Tumor
0.1
636
Normal
0.1
342
Normal
0.1
162
Normal
0.1
944
Normal
0.1
278
Normal
0.1
465
Tumor
0.1
786
Normal
0.1
355
Tumor
0.1
445
Tumor
0.1
741
Tumor
0.1
635
Tumor
0.1
963
Tumor
0.1
221
Tumor
0.0
186
Normal
0.0
978
Normal
0.0
953
Tumor
0.0
955
Tumor
0.0
817
Tumor
0.0
968
Normal
0.0
723
Tumor
0.0
616
Normal
0.0
1026
Normal
0.0
868
Normal
0.0
641
Tumor
0.0
366
Normal
0.0
1045
Tumor
0.0
573
Tumor
0.0
884
Normal
0.0
1014
Normal
0.0
516
Normal
0.0
813
Tumor
0.0
492
Normal
0.0
938
Normal
0.0
714
Normal
0.0
188
Normal
0.0
958
Normal
0.0
912
Normal
0.0
436
Normal
0.0
976
Normal
0.0
432
Normal
0.0
343
Tumor
0.0
617
Tumor
0.0
285
Tumor
0.0
312
Normal
0.0
227
Tumor
0.0
172
Normal
0.0
421
Tumor
0.0
866
Normal
0.0
413
Tumor
0.0
952
Normal
0.0
662
Normal
0.0
344
Normal
0.0
213
Tumor
0.0
572
Normal
0.0
482
Normal
0.0
975
Tumor
0.0
125
Tumor
0.0
455
Tumor
0.0
187
Tumor
0.0
112
Tumor
0.0
926
Normal
0.0
435
Tumor
0.0
352
Normal
0.0
211
Tumor
0.0
1016
Normal
-0.1
728
Normal
-0.1
1028
Normal
-0.1
563
Tumor
-0.1
818
Normal
-0.1
518
Normal
-0.1
258
Normal
-0.1
874
Normal
-0.1
535
Tumor
-0.1
132
Normal
-0.1
738
Normal
-0.1
185
Tumor
-0.1
862
Normal
-0.1
878
Normal
-0.1
452
Normal
-0.1
328
Normal
-0.1
568
Normal
-0.1
141
Tumor
-0.1
356
Normal
-0.1
228
Normal
-0.1
743
Tumor
-0.1
416
Normal
-0.1
534
Normal
-0.1
1041
Tumor
-0.1
742
Normal
-0.1
648
Normal
-0.1
268
Normal
-0.1
918
Normal
-0.1
362
Normal
-0.1
672
Normal
-0.1
145
Tumor
-0.1
391
Tumor
-0.1
864
Normal
-0.1
446
Normal
-0.1
433
Tumor
-0.1
396
Normal
-0.1
716
Normal
-0.1
538
Normal
-0.1
394
Normal
-0.1
298
Normal
-0.1
388
Normal
-0.1
387
Tumor
-0.1
376
Normal
-0.1
297
Tumor
-0.1
664
Normal
-0.1
311
Tumor
-0.1
478
Normal
-0.1
461
Tumor
-0.1
564
Normal
-0.1
823
Tumor
-0.1
332
Normal
-0.1
262
Normal
-0.1
558
Normal
-0.1
368
Normal
-0.1
494
Normal
-0.1
536
Normal
-0.1
778
Normal
-0.1
392
Normal
-0.1
517
Tumor
-0.1
386
Normal
-0.1
1025
Tumor
-0.1
474
Normal
-0.1
272
Normal
-0.1
713
Tumor
-0.1
484
Normal
-0.1
142
Normal
-0.1
744
Normal
-0.1
574
Normal
-0.2
526
Normal
-0.2
696
Normal
-0.2
666
Normal
-0.2
488
Normal
-0.2
1032
Normal
-0.2
146
Normal
-0.2
1022
Normal
-0.2
427
Tumor
-0.2
528
Normal
-0.2
447
Tumor
-0.2
138
Normal
-0.2
126
Normal
-0.2
1042
Normal
-0.2
914
Normal
-0.2
222
Normal
-0.2
223
Tumor
-0.2
136
Normal
-0.2
327
Tumor
-0.2
916
Normal
-0.2
363
Tumor
-0.2
462
Normal
-0.2
982
Normal
-0.2
468
Normal
-0.2
232
Normal
-0.2
466
Normal
-0.2
524
Normal
-0.2
984
Normal
-0.2
925
Tumor
-0.2
858
Normal
-0.2
286
Normal
-0.2
924
Normal
-0.2
195
Tumor
-0.2
737
Tumor
-0.2
412
Normal
-0.2
715
Tumor
-0.2
434
Normal
-0.2
114
Normal
-0.2
814
Normal
-0.2
384
Normal
-0.2
954
Normal
-0.2
698
Normal
-0.2
111
Normal
-0.2
127
Tumor
-0.2
816
Normal
-0.2
472
Normal
-0.2
852
Normal
-0.2
415
Tumor
-0.2
364
Normal
-0.2
444
Normal
-0.2
922
Normal
-0.2
448
Normal
-0.2
284
Normal
-0.2
191
Tumor
-0.3
1044
Normal
-0.3
917
Tumor
-0.3
721
Tumor
-0.3
214
Normal
-0.3
135
Tumor
-0.3
824
Normal
-0.3
218
Normal
-0.3
196
Normal
-0.3
192
Normal
-0.3
937
Tumor
-0.3
267
Tumor
-0.3
212
Normal
-0.3
224
Normal
-0.3
128
Normal
-0.3
1046
Normal
-0.3
498
Normal
-0.3
422
Normal
-0.4
124
Normal
-0.4
428
Normal
-0.4
426
Normal
-0.4
113
Tumor
-0.4
424
Normal
-0.6
414
Normal
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
