MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.0 nTPM
HPA Brain:30.0 nTPM
GTEx:22.0 nTPM
FANTOM5:56.1 Scaled Tags Per Million
Pig:17.1 nTPM
Mouse:16.0 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.7
2219 Male, age 76, both hemispheres 34.6
2586 Male, age 75, left hemisphere 32.3
1830 Male, age 51, unknown 30.1
2828 Female, age 72, unknown 28.7
1870 Female, age 42, unknown 26.3
2666 Male, age 74, left hemisphere 25.8
1833 Male, age 53, unknown 25.6
1827 Male, age 72, unknown 25.4
2411 Female, age 72, unknown 24.7
2019 Male, age 18, unknown 23.5
Dorsal raphe nucleus
nTPM: 24.7
2750 Male, age 76, both hemispheres 26.9
2047 Male, age 72, unknown 24.8
2016 Female, age 72, unknown 24.5
1828 Male, age 53, unknown 23.6
2298 Female, age 72, unknown 23.6
Inferior colliculus
nTPM: 23.9
2849 Male, age 72, unknown 26.2
1890 Male, age 53, unknown 25.8
1848 Female, age 42, unknown 22.8
2097 Female, age 72, unknown 21.0
Median raphe nucleus
nTPM: 25.5
2220 Male, age 76, midline 25.5
Periaquaductal grey, anterior
nTPM: 27.9
1947 Male, age 18, unknown 30.2
1795 Male, age 51, unknown 28.1
2502 Female, age 75, unknown 25.3
Periaquaductal grey, dorsal
nTPM: 25.0
2464 Female, age 72, unknown 26.7
2850 Male, age 76, both hemispheres 25.2
1831 Male, age 72, unknown 25.1
1840 Male, age 53, unknown 23.0
Periaquaductal grey, lateral
nTPM: 30.0
2140 Male, age 76, both hemispheres 31.1
2053 Male, age 18, unknown 30.1
2272 Male, age 74, both hemispheres 28.7
Pretectal area
nTPM: 27.4
2316 Male, age 76, right hemisphere 34.7
2667 Female, age 75, unknown 33.7
2407 Male, age 75, both hemispheres 32.6
2273 Male, age 74, both hemispheres 28.1
2224 Female, age 72, unknown 26.6
2825 Male, age 18, unknown 25.5
1815 Male, age 53, unknown 24.9
1944 Female, age 72, unknown 24.9
2007 Male, age 72, unknown 24.9
1816 Male, age 51, unknown 22.4
1817 Female, age 42, unknown 22.4
Red nucleus
nTPM: 29.2
2823 Male, age 76, right hemisphere 34.3
2588 Male, age 74, left hemisphere 32.2
2227 Male, age 72, unknown 31.4
2769 Male, age 72, unknown 31.2
2785 Male, age 18, unknown 30.7
2584 Male, age 75, left hemisphere 30.4
1904 Male, age 53, unknown 30.0
2503 Female, age 72, unknown 29.5
1865 Male, age 51, unknown 28.8
2725 Female, age 75, unknown 25.7
1954 Female, age 42, unknown 25.5
1821 Female, age 72, unknown 20.8
Substantia nigra
nTPM: 25.0
2583 Male, age 75, right hemisphere 30.1
2590 Female, age 75, unknown 28.5
2699 Male, age 18, unknown 26.7
1941 Male, age 53, unknown 26.2
2409 Female, age 72, unknown 26.0
2665 Male, age 74, both hemispheres 25.7
1851 Male, age 51, unknown 23.9
2241 Male, age 72, unknown 21.3
1889 Female, age 72, unknown 21.0
1916 Female, age 42, unknown 20.8
Superior colliculus
nTPM: 28.3
1913 Female, age 42, unknown 34.6
1995 Male, age 72, unknown 29.7
1796 Male, age 53, unknown 29.2
1839 Male, age 51, unknown 28.6
2261 Male, age 18, unknown 28.1
2664 Male, age 75, both hemispheres 27.6
2087 Female, age 72, unknown 27.2
2587 Male, age 74, left hemisphere 27.0
1895 Male, age 76, right hemisphere 26.2
2668 Female, age 75, unknown 24.3
Ventral tegmental area
nTPM: 24.7
1942 Male, age 51, unknown 27.7
2021 Male, age 53, unknown 26.7
2218 Male, age 76, both hemispheres 25.6
2410 Female, age 72, unknown 23.9
2223 Female, age 72, unknown 23.3
1915 Female, age 42, unknown 21.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.0
Samples: 139

Max nTPM: 46.5
Min nTPM: 11.6
Std nTPM: 6.2
Median nTPM: 20.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 46.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 45.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 43.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 40.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 37.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 35.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 34.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 33.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 33.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 32.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 32.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 56.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.1
FF:10158-103A5 76 years, female 56.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.9
Samples: 4

Max nTPM: 19.2
Min nTPM: 14.4
Sample A Female 19.2
Sample B Female 14.4
Sample C Male 14.4
Sample D Male 15.5
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 22.0
Min nTPM: 14.7
Sample A Female 22.0
Sample B Female 14.7
Sample C Male 16.4
Sample D Male 15.5
Periaqueductal gray
nTPM: 13.9
Samples: 3

Max nTPM: 15.0
Min nTPM: 12.1
Sample B Female 12.1
Sample C Male 14.7
Sample D Male 15.0
Superior colliculi
nTPM: 16.3
Samples: 4

Max nTPM: 18.5
Min nTPM: 13.6
Sample A Female 18.5
Sample B Female 16.9
Sample C Male 13.6
Sample D Male 16.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.0
Samples: 4

Max nTPM: 17.6
Min nTPM: 14.6
Sample A Male 16.6
Sample B Male 17.6
Sample C Female 15.3
Sample D Female 14.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
68341579 Antisense, RP_041207_01_G09, Mouse strain C57BL/6J (56 days, male) 2.7

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