MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.9 nTPM
HPA Brain:21.9 nTPM
GTEx:5.9 nTPM
FANTOM5:7.5 Scaled Tags Per Million
Mouse:5.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 21.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.2
2219 Male, age 76, both hemispheres 19.6
1827 Male, age 72, unknown 19.0
1833 Male, age 53, unknown 16.9
2411 Female, age 72, unknown 16.7
2828 Female, age 72, unknown 16.7
1830 Male, age 51, unknown 16.6
1870 Female, age 42, unknown 16.2
2666 Male, age 74, left hemisphere 14.1
2019 Male, age 18, unknown 13.8
2586 Male, age 75, left hemisphere 12.5
Dorsal raphe nucleus
nTPM: 18.7
2016 Female, age 72, unknown 20.9
2047 Male, age 72, unknown 20.0
1828 Male, age 53, unknown 18.5
2298 Female, age 72, unknown 17.4
2750 Male, age 76, both hemispheres 16.9
Inferior colliculus
nTPM: 20.6
2849 Male, age 72, unknown 22.9
1848 Female, age 42, unknown 21.5
1890 Male, age 53, unknown 19.4
2097 Female, age 72, unknown 18.7
Median raphe nucleus
nTPM: 18.8
2220 Male, age 76, midline 18.8
Periaquaductal grey, anterior
nTPM: 16.2
1947 Male, age 18, unknown 18.6
1795 Male, age 51, unknown 16.7
2502 Female, age 75, unknown 13.3
Periaquaductal grey, dorsal
nTPM: 21.9
1840 Male, age 53, unknown 23.4
2850 Male, age 76, both hemispheres 22.4
2464 Female, age 72, unknown 21.0
1831 Male, age 72, unknown 20.9
Periaquaductal grey, lateral
nTPM: 21.9
2140 Male, age 76, both hemispheres 23.6
2272 Male, age 74, both hemispheres 22.5
2053 Male, age 18, unknown 19.7
Pretectal area
nTPM: 17.2
2273 Male, age 74, both hemispheres 25.4
2224 Female, age 72, unknown 21.6
2667 Female, age 75, unknown 19.5
2316 Male, age 76, right hemisphere 19.0
2825 Male, age 18, unknown 18.9
1816 Male, age 51, unknown 16.7
1944 Female, age 72, unknown 15.4
2407 Male, age 75, both hemispheres 15.4
1815 Male, age 53, unknown 12.9
1817 Female, age 42, unknown 12.0
2007 Male, age 72, unknown 11.9
Red nucleus
nTPM: 15.7
1954 Female, age 42, unknown 19.4
2823 Male, age 76, right hemisphere 18.2
2725 Female, age 75, unknown 16.9
1865 Male, age 51, unknown 15.7
2503 Female, age 72, unknown 15.7
2227 Male, age 72, unknown 15.2
2769 Male, age 72, unknown 15.2
2588 Male, age 74, left hemisphere 15.1
1821 Female, age 72, unknown 14.7
1904 Male, age 53, unknown 14.3
2584 Male, age 75, left hemisphere 14.1
2785 Male, age 18, unknown 14.0
Substantia nigra
nTPM: 14.8
2241 Male, age 72, unknown 18.2
2590 Female, age 75, unknown 17.9
1941 Male, age 53, unknown 15.9
2699 Male, age 18, unknown 15.3
2583 Male, age 75, right hemisphere 15.1
1889 Female, age 72, unknown 14.2
1916 Female, age 42, unknown 13.8
2409 Female, age 72, unknown 13.2
2665 Male, age 74, both hemispheres 12.5
1851 Male, age 51, unknown 12.4
Superior colliculus
nTPM: 16.0
1895 Male, age 76, right hemisphere 20.8
1839 Male, age 51, unknown 17.2
2087 Female, age 72, unknown 16.9
2261 Male, age 18, unknown 16.8
1796 Male, age 53, unknown 16.7
2664 Male, age 75, both hemispheres 15.6
2587 Male, age 74, left hemisphere 15.1
1913 Female, age 42, unknown 14.3
1995 Male, age 72, unknown 14.1
2668 Female, age 75, unknown 12.4
Ventral tegmental area
nTPM: 15.8
2021 Male, age 53, unknown 18.7
2218 Male, age 76, both hemispheres 17.1
1942 Male, age 51, unknown 16.1
1915 Female, age 42, unknown 14.8
2223 Female, age 72, unknown 14.8
2410 Female, age 72, unknown 13.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.9
Samples: 139

Max nTPM: 11.2
Min nTPM: 2.3
Std nTPM: 1.6
Median nTPM: 5.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 11.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 10.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 9.8
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 9.5
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 8.7
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 8.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 8.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 8.5
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 8.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 8.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 8.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 7.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.5
FF:10158-103A5 76 years, female 7.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.7
Samples: 4

Max nTPM: 6.0
Min nTPM: 5.2
Sample A Male 5.2
Sample B Male 6.0
Sample C Female 5.9
Sample D Female 5.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68193069 Antisense, RP_040916_02_C11, Mouse strain C57BL/6J (56 days, male) 0.1

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