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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SVIP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
6.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
4.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
2.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SVIP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
70.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
1.6
921
Tumor
1.3
865
Tumor
1.2
553
Tumor
1.1
533
Tumor
1.0
851
Tumor
0.9
257
Tumor
0.9
615
Tumor
0.9
1043
Tumor
0.9
471
Tumor
0.9
123
Tumor
0.8
1021
Tumor
0.8
527
Tumor
0.8
665
Tumor
0.8
663
Tumor
0.8
777
Tumor
0.8
443
Tumor
0.7
983
Tumor
0.7
341
Tumor
0.6
357
Tumor
0.6
393
Tumor
0.6
391
Tumor
0.6
221
Tumor
0.6
431
Tumor
0.6
817
Tumor
0.5
1013
Tumor
0.5
217
Tumor
0.5
415
Tumor
0.5
661
Tumor
0.5
925
Tumor
0.5
911
Tumor
0.5
375
Tumor
0.5
1031
Tumor
0.5
171
Tumor
0.5
951
Tumor
0.4
863
Tumor
0.4
647
Tumor
0.4
353
Tumor
0.4
724
Normal
0.4
917
Tumor
0.4
297
Tumor
0.4
913
Tumor
0.4
311
Tumor
0.4
953
Tumor
0.4
413
Tumor
0.4
271
Tumor
0.4
641
Tumor
0.4
1045
Tumor
0.4
421
Tumor
0.4
884
Normal
0.4
923
Tumor
0.4
425
Tumor
0.3
525
Tumor
0.3
387
Tumor
0.3
328
Normal
0.3
1027
Tumor
0.3
283
Tumor
0.3
368
Normal
0.3
1025
Tumor
0.3
513
Tumor
0.3
574
Normal
0.3
223
Tumor
0.3
937
Tumor
0.3
515
Tumor
0.3
497
Tumor
0.3
161
Tumor
0.3
331
Tumor
0.3
981
Tumor
0.3
487
Tumor
0.3
383
Tumor
0.3
367
Tumor
0.3
737
Tumor
0.3
517
Tumor
0.2
755
Tumor
0.2
965
Tumor
0.2
192
Normal
0.2
627
Tumor
0.2
493
Tumor
0.2
285
Tumor
0.2
912
Normal
0.2
564
Normal
0.2
481
Tumor
0.2
384
Normal
0.2
385
Tumor
0.2
498
Normal
0.2
741
Tumor
0.2
427
Tumor
0.2
355
Tumor
0.2
185
Tumor
0.2
135
Tumor
0.2
545
Tumor
0.2
365
Tumor
0.2
743
Tumor
0.2
957
Tumor
0.2
721
Tumor
0.2
818
Normal
0.2
366
Normal
0.2
861
Tumor
0.2
428
Normal
0.2
563
Tumor
0.1
361
Tumor
0.1
824
Normal
0.1
436
Normal
0.1
1042
Normal
0.1
546
Normal
0.1
943
Tumor
0.1
492
Normal
0.1
484
Normal
0.1
516
Normal
0.1
461
Tumor
0.1
131
Tumor
0.1
938
Normal
0.1
924
Normal
0.1
313
Tumor
0.1
878
Normal
0.1
455
Tumor
0.1
473
Tumor
0.1
568
Normal
0.1
926
Normal
0.1
916
Normal
0.1
414
Normal
0.1
882
Normal
0.1
823
Tumor
0.1
956
Normal
0.1
534
Normal
0.1
967
Tumor
0.1
518
Normal
0.1
213
Tumor
0.1
535
Tumor
0.1
451
Tumor
0.1
695
Tumor
0.1
537
Tumor
0.1
697
Tumor
0.1
728
Normal
0.0
868
Normal
0.0
554
Normal
0.0
472
Normal
0.0
424
Normal
0.0
616
Normal
0.0
422
Normal
0.0
977
Tumor
0.0
1046
Normal
0.0
222
Normal
0.0
195
Tumor
0.0
483
Tumor
0.0
963
Tumor
0.0
857
Tumor
0.0
636
Normal
0.0
1041
Tumor
0.0
162
Normal
0.0
488
Normal
0.0
526
Normal
0.0
573
Tumor
0.0
343
Tumor
0.0
351
Tumor
0.0
914
Normal
0.0
494
Normal
0.0
816
Normal
0.0
538
Normal
0.0
858
Normal
0.0
416
Normal
0.0
354
Normal
0.0
723
Tumor
0.0
463
Tumor
0.0
342
Normal
0.0
426
Normal
0.0
966
Normal
0.0
648
Normal
0.0
922
Normal
0.0
862
Normal
0.0
696
Normal
0.0
738
Normal
0.0
873
Tumor
-0.1
524
Normal
-0.1
852
Normal
-0.1
954
Normal
-0.1
376
Normal
-0.1
944
Normal
-0.1
448
Normal
-0.1
742
Normal
-0.1
727
Tumor
-0.1
1028
Normal
-0.1
1044
Normal
-0.1
618
Normal
-0.1
514
Normal
-0.1
955
Tumor
-0.1
978
Normal
-0.1
881
Tumor
-0.1
975
Tumor
-0.1
528
Normal
-0.1
125
Tumor
-0.1
815
Tumor
-0.1
628
Normal
-0.1
686
Normal
-0.1
396
Normal
-0.1
744
Normal
-0.1
394
Normal
-0.1
423
Tumor
-0.1
1016
Normal
-0.1
364
Normal
-0.1
218
Normal
-0.1
536
Normal
-0.1
356
Normal
-0.1
386
Normal
-0.1
883
Tumor
-0.1
952
Normal
-0.1
332
Normal
-0.1
228
Normal
-0.1
467
Tumor
-0.1
698
Normal
-0.1
918
Normal
-0.1
187
Tumor
-0.1
558
Normal
-0.2
722
Normal
-0.2
635
Tumor
-0.2
127
Tumor
-0.2
714
Normal
-0.2
474
Normal
-0.2
141
Tumor
-0.2
444
Normal
-0.2
277
Tumor
-0.2
411
Tumor
-0.2
756
Normal
-0.2
984
Normal
-0.2
362
Normal
-0.2
447
Tumor
-0.2
968
Normal
-0.2
147
Tumor
-0.2
1022
Normal
-0.2
312
Normal
-0.2
874
Normal
-0.2
867
Tumor
-0.2
482
Normal
-0.2
446
Normal
-0.2
1014
Normal
-0.2
915
Tumor
-0.2
358
Normal
-0.2
298
Normal
-0.2
148
Normal
-0.2
186
Normal
-0.2
352
Normal
-0.2
1026
Normal
-0.2
211
Tumor
-0.2
1032
Normal
-0.2
572
Normal
-0.2
142
Normal
-0.2
212
Normal
-0.2
388
Normal
-0.2
671
Tumor
-0.2
716
Normal
-0.2
982
Normal
-0.2
392
Normal
-0.2
864
Normal
-0.2
278
Normal
-0.2
713
Tumor
-0.2
866
Normal
-0.3
196
Normal
-0.3
412
Normal
-0.3
432
Normal
-0.3
642
Normal
-0.3
314
Normal
-0.3
567
Tumor
-0.3
214
Normal
-0.3
491
Tumor
-0.3
466
Normal
-0.3
172
Normal
-0.3
286
Normal
-0.3
146
Normal
-0.3
664
Normal
-0.3
672
Normal
-0.3
327
Tumor
-0.3
456
Normal
-0.3
191
Tumor
-0.3
746
Normal
-0.3
435
Tumor
-0.3
1015
Tumor
-0.3
778
Normal
-0.3
344
Normal
-0.3
452
Normal
-0.3
464
Normal
-0.3
227
Tumor
-0.3
224
Normal
-0.3
662
Normal
-0.3
478
Normal
-0.4
462
Normal
-0.4
284
Normal
-0.4
745
Tumor
-0.4
433
Tumor
-0.4
258
Normal
-0.4
964
Normal
-0.4
126
Normal
-0.4
445
Tumor
-0.4
111
Normal
-0.4
232
Normal
-0.4
137
Tumor
-0.4
877
Tumor
-0.4
786
Normal
-0.4
138
Normal
-0.4
267
Tumor
-0.4
465
Tumor
-0.4
468
Normal
-0.5
124
Normal
-0.5
976
Normal
-0.5
523
Tumor
-0.5
434
Normal
-0.5
715
Tumor
-0.5
395
Tumor
-0.5
814
Normal
-0.5
268
Normal
-0.5
114
Normal
-0.5
188
Normal
-0.5
132
Normal
-0.5
557
Tumor
-0.5
136
Normal
-0.5
958
Normal
-0.6
571
Tumor
-0.6
272
Normal
-0.6
617
Tumor
-0.6
128
Normal
-0.6
262
Normal
-0.6
231
Tumor
-0.6
363
Tumor
-0.7
145
Tumor
-0.7
261
Tumor
-0.7
785
Tumor
-0.7
477
Tumor
-0.8
113
Tumor
-0.8
112
Tumor
-0.9
813
Tumor
-0.9
666
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
