MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA Brain:11.6 nTPM
GTEx:9.5 nTPM
FANTOM5:42.3 Scaled Tags Per Million
Pig:24.5 nTPM
Mouse:63.7 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 11.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.9
2019 Male, age 18, unknown 10.9
2586 Male, age 75, left hemisphere 10.8
1870 Female, age 42, unknown 10.5
1833 Male, age 53, unknown 10.2
2411 Female, age 72, unknown 9.9
1827 Male, age 72, unknown 9.8
2219 Male, age 76, both hemispheres 9.3
2666 Male, age 74, left hemisphere 9.3
1830 Male, age 51, unknown 9.2
2828 Female, age 72, unknown 9.0
Dorsal raphe nucleus
nTPM: 11.1
2298 Female, age 72, unknown 11.7
1828 Male, age 53, unknown 11.2
2750 Male, age 76, both hemispheres 11.0
2047 Male, age 72, unknown 10.9
2016 Female, age 72, unknown 10.5
Inferior colliculus
nTPM: 10.3
2097 Female, age 72, unknown 11.6
1848 Female, age 42, unknown 10.6
1890 Male, age 53, unknown 10.2
2849 Male, age 72, unknown 9.0
Median raphe nucleus
nTPM: 11.0
2220 Male, age 76, midline 11.0
Periaquaductal grey, anterior
nTPM: 11.0
2502 Female, age 75, unknown 11.6
1947 Male, age 18, unknown 11.2
1795 Male, age 51, unknown 10.1
Periaquaductal grey, dorsal
nTPM: 10.3
1840 Male, age 53, unknown 10.9
2850 Male, age 76, both hemispheres 10.6
2464 Female, age 72, unknown 10.4
1831 Male, age 72, unknown 9.2
Periaquaductal grey, lateral
nTPM: 9.9
2140 Male, age 76, both hemispheres 10.5
2272 Male, age 74, both hemispheres 9.7
2053 Male, age 18, unknown 9.4
Pretectal area
nTPM: 10.9
1816 Male, age 51, unknown 13.0
2007 Male, age 72, unknown 12.7
1815 Male, age 53, unknown 11.7
1817 Female, age 42, unknown 11.7
1944 Female, age 72, unknown 11.7
2273 Male, age 74, both hemispheres 11.1
2224 Female, age 72, unknown 10.8
2316 Male, age 76, right hemisphere 10.1
2667 Female, age 75, unknown 9.7
2825 Male, age 18, unknown 8.9
2407 Male, age 75, both hemispheres 8.8
Red nucleus
nTPM: 10.0
1821 Female, age 72, unknown 11.6
2503 Female, age 72, unknown 10.9
2725 Female, age 75, unknown 10.8
1954 Female, age 42, unknown 10.6
2785 Male, age 18, unknown 10.6
2823 Male, age 76, right hemisphere 10.5
1904 Male, age 53, unknown 9.9
2227 Male, age 72, unknown 9.8
1865 Male, age 51, unknown 9.3
2769 Male, age 72, unknown 9.3
2584 Male, age 75, left hemisphere 8.9
2588 Male, age 74, left hemisphere 8.3
Substantia nigra
nTPM: 11.6
2241 Male, age 72, unknown 14.9
1916 Female, age 42, unknown 14.5
1851 Male, age 51, unknown 12.3
1889 Female, age 72, unknown 11.8
2409 Female, age 72, unknown 11.1
2583 Male, age 75, right hemisphere 11.0
2699 Male, age 18, unknown 10.9
1941 Male, age 53, unknown 10.6
2665 Male, age 74, both hemispheres 9.6
2590 Female, age 75, unknown 9.5
Superior colliculus
nTPM: 10.3
2668 Female, age 75, unknown 12.1
2087 Female, age 72, unknown 11.4
2261 Male, age 18, unknown 11.4
1796 Male, age 53, unknown 10.2
1839 Male, age 51, unknown 10.1
1913 Female, age 42, unknown 10.1
2664 Male, age 75, both hemispheres 9.8
1995 Male, age 72, unknown 9.6
1895 Male, age 76, right hemisphere 9.4
2587 Male, age 74, left hemisphere 8.6
Ventral tegmental area
nTPM: 10.8
1915 Female, age 42, unknown 11.4
2218 Male, age 76, both hemispheres 11.0
2223 Female, age 72, unknown 11.0
1942 Male, age 51, unknown 10.5
2410 Female, age 72, unknown 10.5
2021 Male, age 53, unknown 10.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.5
Samples: 139

Max nTPM: 15.6
Min nTPM: 6.1
Std nTPM: 1.7
Median nTPM: 9.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 15.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 14.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 14.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 14.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 13.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 13.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 13.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 13.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 12.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 12.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 12.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.3
FF:10158-103A5 76 years, female 42.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.1
Samples: 4

Max nTPM: 23.3
Min nTPM: 19.0
Sample A Female 23.3
Sample B Female 19.0
Sample C Male 21.2
Sample D Male 20.7
Midbrain
nTPM: 24.5
Samples: 4

Max nTPM: 29.6
Min nTPM: 21.3
Sample A Female 24.4
Sample B Female 22.7
Sample C Male 29.6
Sample D Male 21.3
Periaqueductal gray
nTPM: 18.7
Samples: 3

Max nTPM: 19.7
Min nTPM: 16.9
Sample B Female 19.5
Sample C Male 19.7
Sample D Male 16.9
Superior colliculi
nTPM: 24.3
Samples: 4

Max nTPM: 30.3
Min nTPM: 19.7
Sample A Female 23.5
Sample B Female 19.7
Sample C Male 30.3
Sample D Male 23.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 63.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.7
Samples: 4

Max nTPM: 67.0
Min nTPM: 59.9
Sample A Male 61.7
Sample B Male 67.0
Sample C Female 66.3
Sample D Female 59.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
68743883 Antisense, RP_050203_01_G08, Mouse strain C57BL/6J (56 days, male) 4.8
70920081 Antisense, RP_050713_02_F06, Mouse strain C57BL/6J (56 days, male) 1.4

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