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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRK6 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
37.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
31.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
29.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
26.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
16.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GRK6 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
671
Tumor
0.8
724
Normal
0.8
211
Tumor
0.7
536
Normal
0.7
213
Tumor
0.7
1031
Tumor
0.6
877
Tumor
0.6
665
Tumor
0.6
721
Tumor
0.6
713
Tumor
0.6
524
Normal
0.6
125
Tumor
0.6
415
Tumor
0.5
434
Normal
0.5
492
Normal
0.5
916
Normal
0.5
984
Normal
0.5
746
Normal
0.5
498
Normal
0.5
272
Normal
0.5
616
Normal
0.5
627
Tumor
0.5
648
Normal
0.5
1042
Normal
0.5
814
Normal
0.5
954
Normal
0.4
447
Tumor
0.4
192
Normal
0.4
923
Tumor
0.4
943
Tumor
0.4
823
Tumor
0.4
385
Tumor
0.4
918
Normal
0.4
952
Normal
0.4
662
Normal
0.4
1028
Normal
0.4
628
Normal
0.4
958
Normal
0.4
978
Normal
0.4
384
Normal
0.4
617
Tumor
0.4
966
Normal
0.4
716
Normal
0.4
975
Tumor
0.4
212
Normal
0.4
126
Normal
0.4
343
Tumor
0.4
967
Tumor
0.4
355
Tumor
0.4
491
Tumor
0.4
386
Normal
0.4
471
Tumor
0.4
915
Tumor
0.4
1014
Normal
0.4
262
Normal
0.4
852
Normal
0.3
523
Tumor
0.3
195
Tumor
0.3
538
Normal
0.3
413
Tumor
0.3
478
Normal
0.3
285
Tumor
0.3
283
Tumor
0.3
917
Tumor
0.3
366
Normal
0.3
383
Tumor
0.3
922
Normal
0.3
944
Normal
0.3
473
Tumor
0.3
615
Tumor
0.3
778
Normal
0.3
686
Normal
0.3
258
Normal
0.3
697
Tumor
0.3
1044
Normal
0.3
861
Tumor
0.3
224
Normal
0.3
926
Normal
0.3
444
Normal
0.3
362
Normal
0.3
884
Normal
0.3
664
Normal
0.3
232
Normal
0.3
284
Normal
0.3
816
Normal
0.3
924
Normal
0.3
865
Tumor
0.3
983
Tumor
0.3
535
Tumor
0.3
185
Tumor
0.3
874
Normal
0.3
554
Normal
0.3
312
Normal
0.3
968
Normal
0.3
965
Tumor
0.3
141
Tumor
0.3
217
Tumor
0.3
976
Normal
0.3
956
Normal
0.2
1043
Tumor
0.2
756
Normal
0.2
1016
Normal
0.2
868
Normal
0.2
188
Normal
0.2
514
Normal
0.2
223
Tumor
0.2
1032
Normal
0.2
663
Tumor
0.2
455
Tumor
0.2
963
Tumor
0.2
487
Tumor
0.2
494
Normal
0.2
1022
Normal
0.2
951
Tumor
0.2
964
Normal
0.2
647
Tumor
0.2
474
Normal
0.2
858
Normal
0.2
672
Normal
0.2
925
Tumor
0.2
537
Tumor
0.2
696
Normal
0.2
813
Tumor
0.2
344
Normal
0.2
867
Tumor
0.2
138
Normal
0.2
553
Tumor
0.2
866
Normal
0.2
388
Normal
0.2
518
Normal
0.2
785
Tumor
0.2
472
Normal
0.2
396
Normal
0.2
955
Tumor
0.2
545
Tumor
0.2
618
Normal
0.1
526
Normal
0.1
431
Tumor
0.1
818
Normal
0.1
516
Normal
0.1
786
Normal
0.1
191
Tumor
0.1
738
Normal
0.1
368
Normal
0.1
824
Normal
0.1
571
Tumor
0.1
742
Normal
0.1
228
Normal
0.1
715
Tumor
0.1
1026
Normal
0.1
352
Normal
0.1
862
Normal
0.1
864
Normal
0.1
882
Normal
0.1
328
Normal
0.1
364
Normal
0.1
728
Normal
0.1
488
Normal
0.1
365
Tumor
0.1
432
Normal
0.1
268
Normal
0.1
394
Normal
0.1
878
Normal
0.1
881
Tumor
0.1
446
Normal
0.1
351
Tumor
0.1
573
Tumor
0.1
391
Tumor
0.1
723
Tumor
0.1
464
Normal
0.1
937
Tumor
0.1
161
Tumor
0.1
136
Normal
0.1
857
Tumor
0.1
1025
Tumor
0.1
914
Normal
0.1
1046
Normal
0.1
493
Tumor
0.1
353
Tumor
0.0
363
Tumor
0.0
456
Normal
0.0
131
Tumor
0.0
714
Normal
0.0
416
Normal
0.0
921
Tumor
0.0
558
Normal
0.0
484
Normal
0.0
114
Normal
0.0
698
Normal
0.0
354
Normal
0.0
913
Tumor
0.0
393
Tumor
0.0
314
Normal
0.0
448
Normal
0.0
342
Normal
0.0
422
Normal
0.0
517
Tumor
0.0
883
Tumor
0.0
367
Tumor
0.0
467
Tumor
0.0
332
Normal
0.0
412
Normal
0.0
451
Tumor
0.0
311
Tumor
0.0
392
Normal
0.0
722
Normal
0.0
483
Tumor
0.0
546
Normal
0.0
468
Normal
0.0
187
Tumor
0.0
341
Tumor
0.0
574
Normal
0.0
214
Normal
0.0
218
Normal
0.0
873
Tumor
0.0
533
Tumor
0.0
1013
Tumor
0.0
421
Tumor
0.0
938
Normal
0.0
132
Normal
0.0
461
Tumor
0.0
482
Normal
0.0
375
Tumor
0.0
462
Normal
0.0
481
Tumor
0.0
977
Tumor
0.0
376
Normal
0.0
695
Tumor
0.0
221
Tumor
0.0
387
Tumor
0.0
863
Tumor
0.0
146
Normal
0.0
851
Tumor
0.0
525
Tumor
0.0
642
Normal
0.0
424
Normal
0.0
534
Normal
0.0
1041
Tumor
0.0
957
Tumor
-0.1
127
Tumor
-0.1
172
Normal
-0.1
912
Normal
-0.1
815
Tumor
-0.1
557
Tumor
-0.1
1021
Tumor
-0.1
427
Tumor
-0.1
497
Tumor
-0.1
358
Normal
-0.1
635
Tumor
-0.1
433
Tumor
-0.1
142
Normal
-0.1
113
Tumor
-0.1
666
Normal
-0.1
286
Normal
-0.1
564
Normal
-0.1
414
Normal
-0.1
572
Normal
-0.1
528
Normal
-0.1
563
Tumor
-0.1
1015
Tumor
-0.1
361
Tumor
-0.1
513
Tumor
-0.1
426
Normal
-0.1
1045
Tumor
-0.1
452
Normal
-0.1
148
Normal
-0.1
135
Tumor
-0.1
227
Tumor
-0.1
137
Tumor
-0.1
111
Normal
-0.1
982
Normal
-0.1
428
Normal
-0.1
356
Normal
-0.1
124
Normal
-0.1
463
Tumor
-0.1
395
Tumor
-0.1
636
Normal
-0.1
271
Tumor
-0.2
777
Tumor
-0.2
737
Tumor
-0.2
298
Normal
-0.2
278
Normal
-0.2
661
Tumor
-0.2
423
Tumor
-0.2
436
Normal
-0.2
186
Normal
-0.2
128
Normal
-0.2
527
Tumor
-0.2
685
Tumor
-0.2
162
Normal
-0.2
147
Tumor
-0.2
981
Tumor
-0.2
261
Tumor
-0.2
443
Tumor
-0.2
727
Tumor
-0.2
331
Tumor
-0.2
196
Normal
-0.2
435
Tumor
-0.2
817
Tumor
-0.2
222
Normal
-0.2
911
Tumor
-0.2
568
Normal
-0.3
1027
Tumor
-0.3
425
Tumor
-0.3
277
Tumor
-0.3
755
Tumor
-0.3
641
Tumor
-0.3
744
Normal
-0.3
357
Tumor
-0.3
145
Tumor
-0.3
231
Tumor
-0.3
267
Tumor
-0.3
445
Tumor
-0.3
257
Tumor
-0.4
411
Tumor
-0.4
297
Tumor
-0.4
477
Tumor
-0.4
953
Tumor
-0.4
112
Tumor
-0.4
515
Tumor
-0.4
465
Tumor
-0.4
466
Normal
-0.4
741
Tumor
-0.4
171
Tumor
-0.5
745
Tumor
-0.5
327
Tumor
-0.6
123
Tumor
-0.6
743
Tumor
-0.6
567
Tumor
-0.7
313
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
