MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41243.5 nTPM
HPA Brain:28456.0 nTPM
GTEx:41243.5 nTPM
FANTOM5:32353.2 Scaled Tags Per Million
Pig:21658.7 nTPM
Mouse:5703.7 nTPM
Allen mouse:17.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28456.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20588.9
1830 Male, age 51, unknown 28465.9
1833 Male, age 53, unknown 24396.5
2666 Male, age 74, left hemisphere 23315.9
2019 Male, age 18, unknown 21738.0
2586 Male, age 75, left hemisphere 21570.3
1870 Female, age 42, unknown 21251.0
2411 Female, age 72, unknown 21124.4
2828 Female, age 72, unknown 18884.2
2219 Male, age 76, both hemispheres 13227.5
1827 Male, age 72, unknown 11915.4
Dorsal raphe nucleus
nTPM: 13136.5
2750 Male, age 76, both hemispheres 28138.5
2016 Female, age 72, unknown 13351.6
1828 Male, age 53, unknown 11795.6
2047 Male, age 72, unknown 7739.6
2298 Female, age 72, unknown 4657.4
Inferior colliculus
nTPM: 10404.9
1890 Male, age 53, unknown 11826.9
1848 Female, age 42, unknown 11812.1
2849 Male, age 72, unknown 11678.0
2097 Female, age 72, unknown 6302.6
Median raphe nucleus
nTPM: 14154.2
2220 Male, age 76, midline 14154.2
Periaquaductal grey, anterior
nTPM: 8400.2
2502 Female, age 75, unknown 9506.2
1947 Male, age 18, unknown 9088.2
1795 Male, age 51, unknown 6606.2
Periaquaductal grey, dorsal
nTPM: 6604.7
2464 Female, age 72, unknown 12391.7
1831 Male, age 72, unknown 7793.6
1840 Male, age 53, unknown 3319.8
2850 Male, age 76, both hemispheres 2913.9
Periaquaductal grey, lateral
nTPM: 6287.2
2053 Male, age 18, unknown 8516.2
2272 Male, age 74, both hemispheres 7208.2
2140 Male, age 76, both hemispheres 3137.2
Pretectal area
nTPM: 9265.5
1815 Male, age 53, unknown 14542.7
2316 Male, age 76, right hemisphere 14280.5
2407 Male, age 75, both hemispheres 12033.9
1817 Female, age 42, unknown 11299.0
2007 Male, age 72, unknown 11233.8
2825 Male, age 18, unknown 11070.4
2224 Female, age 72, unknown 5915.6
1944 Female, age 72, unknown 5670.2
2667 Female, age 75, unknown 5611.6
2273 Male, age 74, both hemispheres 5359.1
1816 Male, age 51, unknown 4904.0
Red nucleus
nTPM: 28456.0
1865 Male, age 51, unknown 36635.1
2503 Female, age 72, unknown 34567.6
2823 Male, age 76, right hemisphere 32141.3
2588 Male, age 74, left hemisphere 32088.4
1904 Male, age 53, unknown 30039.4
2769 Male, age 72, unknown 30000.7
2227 Male, age 72, unknown 29647.2
1821 Female, age 72, unknown 27867.5
2785 Male, age 18, unknown 25116.4
1954 Female, age 42, unknown 22435.7
2584 Male, age 75, left hemisphere 21677.4
2725 Female, age 75, unknown 19255.7
Substantia nigra
nTPM: 14008.8
2665 Male, age 74, both hemispheres 18981.8
2583 Male, age 75, right hemisphere 17447.8
2590 Female, age 75, unknown 16064.2
1851 Male, age 51, unknown 15498.7
1889 Female, age 72, unknown 15025.2
2699 Male, age 18, unknown 14352.1
2409 Female, age 72, unknown 13132.8
1941 Male, age 53, unknown 11650.1
2241 Male, age 72, unknown 9040.5
1916 Female, age 42, unknown 8894.3
Superior colliculus
nTPM: 14471.3
2668 Female, age 75, unknown 21919.5
1913 Female, age 42, unknown 20276.7
1995 Male, age 72, unknown 19650.0
2587 Male, age 74, left hemisphere 16750.4
1839 Male, age 51, unknown 16055.9
1895 Male, age 76, right hemisphere 14285.9
2664 Male, age 75, both hemispheres 11723.6
1796 Male, age 53, unknown 10163.1
2087 Female, age 72, unknown 7671.4
2261 Male, age 18, unknown 6216.6
Ventral tegmental area
nTPM: 17469.1
2223 Female, age 72, unknown 35393.2
2410 Female, age 72, unknown 16736.8
2021 Male, age 53, unknown 14641.6
2218 Male, age 76, both hemispheres 13957.3
1942 Male, age 51, unknown 13807.8
1915 Female, age 42, unknown 10278.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 41243.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41243.5
Samples: 139

Max nTPM: 150590.3
Min nTPM: 6072.9
Std nTPM: 27338.0
Median nTPM: 33893.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 150590.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 126521.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 119491.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 119251.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 116922.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 113031.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 102102.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 101241.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 98156.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 91689.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 85996.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32353.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32353.2
FF:10158-103A5 76 years, female 32353.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21658.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16763.0
Samples: 4

Max nTPM: 29932.8
Min nTPM: 8281.4
Sample A Female 15803.9
Sample B Female 8281.4
Sample C Male 13033.9
Sample D Male 29932.8
Midbrain
nTPM: 21658.7
Samples: 4

Max nTPM: 56086.5
Min nTPM: 7444.4
Sample A Female 56086.5
Sample B Female 15268.4
Sample C Male 7835.5
Sample D Male 7444.4
Periaqueductal gray
nTPM: 9206.2
Samples: 3

Max nTPM: 10725.5
Min nTPM: 6729.8
Sample B Female 10725.5
Sample C Male 6729.8
Sample D Male 10163.3
Superior colliculi
nTPM: 12853.5
Samples: 4

Max nTPM: 16951.5
Min nTPM: 6504.8
Sample A Female 13322.4
Sample B Female 6504.8
Sample C Male 14635.3
Sample D Male 16951.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5703.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 5703.7
Samples: 4

Max nTPM: 6439.4
Min nTPM: 4870.7
Sample A Male 6078.0
Sample B Male 4870.7
Sample C Female 5426.7
Sample D Female 6439.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.1
112202838 Antisense, RP_110421_01_F01, Mouse strain C57BL/6J (56 days, male) 22.3
79632288 Antisense, RP_071204_01_C03, Mouse strain C57BL/6J (56 days, male) 11.9

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