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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYO1C is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
168.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
140.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
132.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
110.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
98.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
90.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
89.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
81.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
81.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
79.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
73.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
72.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
72.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
69.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
65.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
65.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
65.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
63.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
63.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
63.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
63.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
62.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
60.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
60.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
58.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
58.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
57.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
57.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
57.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
56.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
55.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
54.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
53.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
53.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
53.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
52.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
51.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
51.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
50.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
49.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
48.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
47.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
46.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
46.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
46.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
45.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
44.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
44.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
43.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
43.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
42.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
41.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
41.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
41.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
41.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
40.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
40.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
40.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
40.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
39.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
39.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
38.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
38.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
38.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
37.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
37.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
37.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
37.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
36.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
36.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
36.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
36.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
35.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
35.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
34.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
33.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
32.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
31.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
31.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
31.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
31.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
31.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
31.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
31.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
29.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
29.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
29.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
28.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
28.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
27.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
26.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
26.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
26.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
26.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
25.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
25.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
24.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
24.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
23.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
23.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
23.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
22.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
22.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
22.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
22.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
21.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYO1C is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.2
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
128.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
117.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
94.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
82.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
80.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
71.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
69.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
64.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
62.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
61.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
60.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
60.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
55.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
53.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
51.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
51.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
49.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
48.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
47.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
46.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
46.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
45.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
42.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
41.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
40.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
40.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
40.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
40.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
40.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
39.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
39.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
38.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
38.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
35.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
34.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
31.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
30.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
30.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
25.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
16.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
192
Normal
0.7
223
Tumor
0.6
563
Tumor
0.6
878
Normal
0.5
414
Normal
0.5
1028
Normal
0.5
312
Normal
0.5
744
Normal
0.4
742
Normal
0.4
298
Normal
0.4
572
Normal
0.4
1022
Normal
0.4
1032
Normal
0.4
816
Normal
0.4
616
Normal
0.4
746
Normal
0.4
136
Normal
0.4
618
Normal
0.4
344
Normal
0.4
386
Normal
0.4
314
Normal
0.4
466
Normal
0.4
786
Normal
0.4
636
Normal
0.4
1026
Normal
0.4
434
Normal
0.4
456
Normal
0.4
916
Normal
0.4
474
Normal
0.4
424
Normal
0.4
272
Normal
0.4
111
Normal
0.4
852
Normal
0.4
354
Normal
0.4
146
Normal
0.4
715
Tumor
0.4
426
Normal
0.4
448
Normal
0.4
938
Normal
0.4
392
Normal
0.4
866
Normal
0.4
138
Normal
0.4
628
Normal
0.4
538
Normal
0.4
958
Normal
0.4
356
Normal
0.4
425
Tumor
0.4
126
Normal
0.4
984
Normal
0.4
982
Normal
0.3
362
Normal
0.3
384
Normal
0.3
824
Normal
0.3
672
Normal
0.3
956
Normal
0.3
394
Normal
0.3
376
Normal
0.3
472
Normal
0.3
818
Normal
0.3
196
Normal
0.3
352
Normal
0.3
574
Normal
0.3
924
Normal
0.3
436
Normal
0.3
546
Normal
0.3
686
Normal
0.3
444
Normal
0.3
128
Normal
0.3
278
Normal
0.3
224
Normal
0.3
478
Normal
0.3
214
Normal
0.3
882
Normal
0.3
412
Normal
0.3
553
Tumor
0.3
124
Normal
0.3
922
Normal
0.3
874
Normal
0.3
422
Normal
0.3
132
Normal
0.3
664
Normal
0.3
968
Normal
0.3
148
Normal
0.3
884
Normal
0.3
464
Normal
0.3
368
Normal
0.3
428
Normal
0.3
284
Normal
0.3
564
Normal
0.3
446
Normal
0.3
534
Normal
0.3
954
Normal
0.3
914
Normal
0.3
738
Normal
0.3
568
Normal
0.3
286
Normal
0.3
498
Normal
0.3
716
Normal
0.3
396
Normal
0.3
172
Normal
0.3
698
Normal
0.3
1044
Normal
0.3
976
Normal
0.3
944
Normal
0.3
536
Normal
0.3
162
Normal
0.3
952
Normal
0.3
262
Normal
0.3
332
Normal
0.3
648
Normal
0.3
528
Normal
0.3
222
Normal
0.3
468
Normal
0.3
484
Normal
0.3
432
Normal
0.3
714
Normal
0.3
258
Normal
0.3
494
Normal
0.3
778
Normal
0.3
416
Normal
0.3
817
Tumor
0.3
868
Normal
0.3
364
Normal
0.3
142
Normal
0.3
388
Normal
0.3
212
Normal
0.3
488
Normal
0.3
218
Normal
0.3
188
Normal
0.3
221
Tumor
0.2
642
Normal
0.2
1042
Normal
0.2
462
Normal
0.2
662
Normal
0.2
723
Tumor
0.2
516
Normal
0.2
728
Normal
0.2
342
Normal
0.2
427
Tumor
0.2
482
Normal
0.2
1014
Normal
0.2
743
Tumor
0.2
558
Normal
0.2
1016
Normal
0.2
452
Normal
0.2
926
Normal
0.2
114
Normal
0.2
421
Tumor
0.2
186
Normal
0.2
864
Normal
0.2
327
Tumor
0.2
228
Normal
0.2
975
Tumor
0.2
912
Normal
0.2
514
Normal
0.2
918
Normal
0.2
964
Normal
0.2
641
Tumor
0.2
232
Normal
0.2
524
Normal
0.2
696
Normal
0.2
756
Normal
0.2
366
Normal
0.2
858
Normal
0.2
862
Normal
0.1
358
Normal
0.1
185
Tumor
0.1
191
Tumor
0.1
722
Normal
0.1
937
Tumor
0.1
526
Normal
0.1
666
Normal
0.1
545
Tumor
0.1
268
Normal
0.1
955
Tumor
0.1
518
Normal
0.1
554
Normal
0.1
451
Tumor
0.1
1041
Tumor
0.1
492
Normal
0.1
1046
Normal
0.1
881
Tumor
0.1
823
Tumor
0.1
966
Normal
0.1
978
Normal
0.1
915
Tumor
0.1
467
Tumor
0.1
814
Normal
0.1
415
Tumor
0.0
141
Tumor
0.0
447
Tumor
0.0
145
Tumor
0.0
455
Tumor
0.0
615
Tumor
0.0
297
Tumor
0.0
721
Tumor
0.0
113
Tumor
0.0
627
Tumor
0.0
1031
Tumor
0.0
557
Tumor
0.0
195
Tumor
0.0
311
Tumor
0.0
461
Tumor
0.0
481
Tumor
0.0
328
Normal
0.0
685
Tumor
0.0
1045
Tumor
0.0
383
Tumor
0.0
187
Tumor
0.0
921
Tumor
0.0
365
Tumor
-0.1
271
Tumor
-0.1
137
Tumor
-0.1
713
Tumor
-0.1
227
Tumor
-0.1
363
Tumor
-0.1
943
Tumor
-0.1
413
Tumor
-0.1
977
Tumor
-0.1
857
Tumor
-0.1
785
Tumor
-0.1
981
Tumor
-0.1
913
Tumor
-0.1
213
Tumor
-0.1
355
Tumor
-0.1
395
Tumor
-0.1
131
Tumor
-0.1
665
Tumor
-0.1
525
Tumor
-0.1
1025
Tumor
-0.1
473
Tumor
-0.1
851
Tumor
-0.1
911
Tumor
-0.1
433
Tumor
-0.1
917
Tumor
-0.1
493
Tumor
-0.1
217
Tumor
-0.2
883
Tumor
-0.2
865
Tumor
-0.2
423
Tumor
-0.2
963
Tumor
-0.2
755
Tumor
-0.2
343
Tumor
-0.2
171
Tumor
-0.2
477
Tumor
-0.2
617
Tumor
-0.2
497
Tumor
-0.2
135
Tumor
-0.2
465
Tumor
-0.2
483
Tumor
-0.2
573
Tumor
-0.2
513
Tumor
-0.2
443
Tumor
-0.2
867
Tumor
-0.2
471
Tumor
-0.2
353
Tumor
-0.2
925
Tumor
-0.2
261
Tumor
-0.2
777
Tumor
-0.3
515
Tumor
-0.3
635
Tumor
-0.3
431
Tumor
-0.3
533
Tumor
-0.3
1043
Tumor
-0.3
697
Tumor
-0.3
283
Tumor
-0.3
277
Tumor
-0.3
813
Tumor
-0.3
491
Tumor
-0.3
527
Tumor
-0.3
1021
Tumor
-0.3
957
Tumor
-0.3
923
Tumor
-0.3
873
Tumor
-0.3
1015
Tumor
-0.3
285
Tumor
-0.3
127
Tumor
-0.3
535
Tumor
-0.3
571
Tumor
-0.3
411
Tumor
-0.4
647
Tumor
-0.4
741
Tumor
-0.4
695
Tumor
-0.4
161
Tumor
-0.4
231
Tumor
-0.4
361
Tumor
-0.4
567
Tumor
-0.4
393
Tumor
-0.4
313
Tumor
-0.4
341
Tumor
-0.4
1027
Tumor
-0.4
671
Tumor
-0.4
147
Tumor
-0.5
331
Tumor
-0.5
375
Tumor
-0.5
517
Tumor
-0.5
123
Tumor
-0.5
112
Tumor
-0.5
387
Tumor
-0.5
724
Normal
-0.5
953
Tumor
-0.5
863
Tumor
-0.5
435
Tumor
-0.5
385
Tumor
-0.6
877
Tumor
-0.6
257
Tumor
-0.6
663
Tumor
-0.6
367
Tumor
-0.6
745
Tumor
-0.6
737
Tumor
-0.6
211
Tumor
-0.6
983
Tumor
-0.6
445
Tumor
-0.6
463
Tumor
-0.6
487
Tumor
-0.6
727
Tumor
-0.6
967
Tumor
-0.6
523
Tumor
-0.6
267
Tumor
-0.7
951
Tumor
-0.7
861
Tumor
-0.7
1013
Tumor
-0.7
537
Tumor
-0.7
357
Tumor
-0.7
815
Tumor
-0.8
125
Tumor
-0.8
391
Tumor
-0.8
351
Tumor
-0.9
965
Tumor
-0.9
661
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
