We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPTAN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
82.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
82.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
77.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
76.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
73.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
66.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
64.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
63.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
62.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
61.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
60.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
60.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
57.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
57.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
56.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
55.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
55.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
54.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
51.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
51.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
50.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
50.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
49.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
48.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
46.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
46.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
45.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
45.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
44.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
43.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
43.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
43.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
43.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
43.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
43.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
43.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
42.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
42.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
42.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
42.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
42.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
42.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
42.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
42.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
41.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
41.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
41.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
40.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
40.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
40.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
40.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
39.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
39.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
39.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
39.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
38.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
37.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
37.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
37.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
35.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
34.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
34.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
34.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
34.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
33.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
33.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
33.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
32.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
31.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
31.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
31.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
31.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
30.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
30.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
28.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
26.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
25.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
25.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
24.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
24.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
22.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
20.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
20.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
17.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
15.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
11.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPTAN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.9
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
112.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
86.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
82.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
76.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
75.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
75.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
70.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
64.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
64.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
62.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
61.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
61.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
61.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
60.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
60.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
60.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
60.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
58.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
57.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
55.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
54.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
54.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
54.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
54.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
53.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
52.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
51.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
50.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
50.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
48.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
48.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
48.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
48.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
47.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
47.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
46.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
46.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
46.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
46.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
46.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
45.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
45.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
45.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
45.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
44.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
44.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
44.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
44.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
43.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
43.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
43.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
43.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
43.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
42.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
41.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
41.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
40.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
40.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
40.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
40.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
40.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
40.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
39.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
39.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
39.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
38.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
38.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
38.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
37.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
37.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
37.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
37.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
36.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
36.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
36.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
36.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
36.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
35.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
35.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
35.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
35.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
34.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
33.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
32.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
32.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
31.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
31.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
31.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
30.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
29.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
29.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
28.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
28.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
28.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
28.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
28.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
27.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
27.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
27.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
27.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
26.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
26.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
26.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
0.6
737
Tumor
0.6
685
Tumor
0.5
873
Tumor
0.5
523
Tumor
0.5
615
Tumor
0.5
412
Normal
0.5
1025
Tumor
0.5
868
Normal
0.4
271
Tumor
0.4
746
Normal
0.4
958
Normal
0.4
743
Tumor
0.4
472
Normal
0.4
921
Tumor
0.4
785
Tumor
0.4
723
Tumor
0.4
738
Normal
0.3
221
Tumor
0.3
534
Normal
0.3
728
Normal
0.3
938
Normal
0.3
1022
Normal
0.3
416
Normal
0.3
477
Tumor
0.3
824
Normal
0.3
695
Tumor
0.3
714
Normal
0.3
478
Normal
0.3
924
Normal
0.3
878
Normal
0.3
448
Normal
0.3
422
Normal
0.3
426
Normal
0.3
546
Normal
0.3
627
Tumor
0.3
742
Normal
0.3
874
Normal
0.3
964
Normal
0.3
1014
Normal
0.3
911
Tumor
0.3
1044
Normal
0.3
516
Normal
0.3
916
Normal
0.3
698
Normal
0.3
1032
Normal
0.3
482
Normal
0.3
977
Tumor
0.3
867
Tumor
0.3
518
Normal
0.3
858
Normal
0.3
513
Tumor
0.3
982
Normal
0.3
1042
Normal
0.3
818
Normal
0.3
966
Normal
0.3
436
Normal
0.3
1026
Normal
0.3
864
Normal
0.3
778
Normal
0.3
968
Normal
0.3
756
Normal
0.3
424
Normal
0.3
514
Normal
0.3
1046
Normal
0.3
462
Normal
0.3
952
Normal
0.3
975
Tumor
0.3
852
Normal
0.3
648
Normal
0.3
882
Normal
0.3
421
Tumor
0.3
951
Tumor
0.2
956
Normal
0.2
866
Normal
0.2
146
Normal
0.2
186
Normal
0.2
474
Normal
0.2
465
Tumor
0.2
716
Normal
0.2
364
Normal
0.2
944
Normal
0.2
564
Normal
0.2
228
Normal
0.2
342
Normal
0.2
686
Normal
0.2
494
Normal
0.2
162
Normal
0.2
912
Normal
0.2
356
Normal
0.2
414
Normal
0.2
314
Normal
0.2
298
Normal
0.2
618
Normal
0.2
745
Tumor
0.2
358
Normal
0.2
452
Normal
0.2
1031
Tumor
0.2
515
Tumor
0.2
862
Normal
0.2
136
Normal
0.2
481
Tumor
0.2
214
Normal
0.2
922
Normal
0.2
328
Normal
0.2
722
Normal
0.2
464
Normal
0.2
816
Normal
0.2
128
Normal
0.2
884
Normal
0.2
616
Normal
0.2
635
Tumor
0.2
915
Tumor
0.2
111
Normal
0.2
212
Normal
0.2
196
Normal
0.2
172
Normal
0.2
132
Normal
0.2
135
Tumor
0.2
222
Normal
0.2
444
Normal
0.2
386
Normal
0.2
428
Normal
0.2
344
Normal
0.2
312
Normal
0.2
443
Tumor
0.2
488
Normal
0.2
455
Tumor
0.2
984
Normal
0.2
918
Normal
0.2
451
Tumor
0.2
786
Normal
0.2
1028
Normal
0.2
435
Tumor
0.2
954
Normal
0.2
218
Normal
0.2
744
Normal
0.2
192
Normal
0.2
376
Normal
0.2
332
Normal
0.2
278
Normal
0.2
415
Tumor
0.2
1043
Tumor
0.2
432
Normal
0.2
636
Normal
0.2
471
Tumor
0.2
755
Tumor
0.2
268
Normal
0.2
363
Tumor
0.2
456
Normal
0.2
727
Tumor
0.2
572
Normal
0.2
1045
Tumor
0.2
137
Tumor
0.2
148
Normal
0.2
664
Normal
0.2
554
Normal
0.2
466
Normal
0.2
138
Normal
0.1
642
Normal
0.1
568
Normal
0.1
188
Normal
0.1
538
Normal
0.1
498
Normal
0.1
666
Normal
0.1
114
Normal
0.1
354
Normal
0.1
817
Tumor
0.1
981
Tumor
0.1
976
Normal
0.1
617
Tumor
0.1
258
Normal
0.1
362
Normal
0.1
567
Tumor
0.1
284
Normal
0.1
131
Tumor
0.1
484
Normal
0.1
696
Normal
0.1
286
Normal
0.1
545
Tumor
0.1
142
Normal
0.1
528
Normal
0.1
863
Tumor
0.1
955
Tumor
0.1
124
Normal
0.1
558
Normal
0.1
272
Normal
0.1
446
Normal
0.1
926
Normal
0.1
365
Tumor
0.1
628
Normal
0.1
662
Normal
0.1
553
Tumor
0.1
227
Tumor
0.1
967
Tumor
0.1
461
Tumor
0.1
388
Normal
0.1
261
Tumor
0.1
978
Normal
0.1
384
Normal
0.1
232
Normal
0.1
262
Normal
0.1
665
Tumor
0.1
468
Normal
0.1
574
Normal
0.1
112
Tumor
0.1
231
Tumor
0.1
524
Normal
0.1
126
Normal
0.1
224
Normal
0.1
517
Tumor
0.1
563
Tumor
0.1
434
Normal
0.1
536
Normal
0.1
641
Tumor
0.1
297
Tumor
0.1
526
Normal
0.0
223
Tumor
0.0
881
Tumor
0.0
715
Tumor
0.0
366
Normal
0.0
777
Tumor
0.0
741
Tumor
0.0
394
Normal
0.0
171
Tumor
0.0
352
Normal
0.0
473
Tumor
0.0
187
Tumor
0.0
1015
Tumor
0.0
368
Normal
0.0
492
Normal
0.0
672
Normal
0.0
1016
Normal
0.0
1027
Tumor
0.0
331
Tumor
0.0
327
Tumor
0.0
392
Normal
0.0
1041
Tumor
0.0
431
Tumor
0.0
527
Tumor
0.0
191
Tumor
0.0
423
Tumor
0.0
914
Normal
0.0
396
Normal
0.0
925
Tumor
0.0
185
Tumor
0.0
923
Tumor
0.0
983
Tumor
0.0
341
Tumor
0.0
943
Tumor
0.0
127
Tumor
0.0
433
Tumor
-0.1
537
Tumor
-0.1
937
Tumor
-0.1
487
Tumor
-0.1
713
Tumor
-0.1
721
Tumor
-0.1
963
Tumor
-0.1
813
Tumor
-0.1
447
Tumor
-0.1
814
Normal
-0.1
671
Tumor
-0.1
413
Tumor
-0.1
1021
Tumor
-0.1
483
Tumor
-0.1
917
Tumor
-0.1
823
Tumor
-0.1
285
Tumor
-0.1
535
Tumor
-0.1
387
Tumor
-0.1
195
Tumor
-0.1
857
Tumor
-0.1
145
Tumor
-0.2
427
Tumor
-0.2
953
Tumor
-0.2
357
Tumor
-0.2
883
Tumor
-0.2
125
Tumor
-0.2
493
Tumor
-0.2
463
Tumor
-0.2
361
Tumor
-0.2
217
Tumor
-0.2
815
Tumor
-0.2
393
Tumor
-0.2
913
Tumor
-0.2
141
Tumor
-0.2
257
Tumor
-0.2
497
Tumor
-0.3
851
Tumor
-0.3
311
Tumor
-0.3
113
Tumor
-0.3
957
Tumor
-0.3
861
Tumor
-0.3
697
Tumor
-0.3
383
Tumor
-0.3
147
Tumor
-0.3
123
Tumor
-0.3
355
Tumor
-0.3
367
Tumor
-0.3
313
Tumor
-0.3
161
Tumor
-0.4
353
Tumor
-0.4
277
Tumor
-0.4
525
Tumor
-0.4
267
Tumor
-0.4
571
Tumor
-0.4
375
Tumor
-0.4
533
Tumor
-0.4
395
Tumor
-0.5
445
Tumor
-0.5
467
Tumor
-0.5
965
Tumor
-0.5
663
Tumor
-0.5
213
Tumor
-0.5
411
Tumor
-0.6
877
Tumor
-0.6
647
Tumor
-0.6
557
Tumor
-0.6
1013
Tumor
-0.6
491
Tumor
-0.6
351
Tumor
-0.7
385
Tumor
-0.7
724
Normal
-0.7
391
Tumor
-0.7
343
Tumor
-0.8
283
Tumor
-0.8
573
Tumor
-0.9
661
Tumor
-0.9
865
Tumor
-1.0
211
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
