MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.9 nTPM
HPA Brain:52.6 nTPM
GTEx:9.9 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Pig:30.2 nTPM
Mouse:13.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 52.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.2
1827 Male, age 72, unknown 50.4
2828 Female, age 72, unknown 49.8
2666 Male, age 74, left hemisphere 46.5
1833 Male, age 53, unknown 43.8
1830 Male, age 51, unknown 42.0
2411 Female, age 72, unknown 40.1
2219 Male, age 76, both hemispheres 38.9
2019 Male, age 18, unknown 38.8
2586 Male, age 75, left hemisphere 37.1
1870 Female, age 42, unknown 34.6
Dorsal raphe nucleus
nTPM: 38.2
2047 Male, age 72, unknown 42.2
2016 Female, age 72, unknown 40.2
1828 Male, age 53, unknown 38.7
2750 Male, age 76, both hemispheres 36.7
2298 Female, age 72, unknown 33.0
Inferior colliculus
nTPM: 36.8
1890 Male, age 53, unknown 39.3
1848 Female, age 42, unknown 39.2
2849 Male, age 72, unknown 34.7
2097 Female, age 72, unknown 34.1
Median raphe nucleus
nTPM: 39.2
2220 Male, age 76, midline 39.2
Periaquaductal grey, anterior
nTPM: 38.1
1947 Male, age 18, unknown 39.9
2502 Female, age 75, unknown 38.3
1795 Male, age 51, unknown 36.3
Periaquaductal grey, dorsal
nTPM: 39.1
1831 Male, age 72, unknown 40.7
1840 Male, age 53, unknown 39.7
2464 Female, age 72, unknown 39.0
2850 Male, age 76, both hemispheres 37.2
Periaquaductal grey, lateral
nTPM: 41.2
2053 Male, age 18, unknown 44.4
2272 Male, age 74, both hemispheres 40.9
2140 Male, age 76, both hemispheres 38.2
Pretectal area
nTPM: 42.0
2407 Male, age 75, both hemispheres 49.0
2667 Female, age 75, unknown 45.6
1816 Male, age 51, unknown 45.4
2007 Male, age 72, unknown 45.0
2316 Male, age 76, right hemisphere 44.3
1944 Female, age 72, unknown 41.8
2825 Male, age 18, unknown 40.9
2273 Male, age 74, both hemispheres 39.4
1815 Male, age 53, unknown 37.5
2224 Female, age 72, unknown 37.0
1817 Female, age 42, unknown 36.4
Red nucleus
nTPM: 39.7
2584 Male, age 75, left hemisphere 54.0
2823 Male, age 76, right hemisphere 47.2
1821 Female, age 72, unknown 40.7
2785 Male, age 18, unknown 40.5
1904 Male, age 53, unknown 39.9
1865 Male, age 51, unknown 38.6
2588 Male, age 74, left hemisphere 37.0
2503 Female, age 72, unknown 36.4
2769 Male, age 72, unknown 36.1
2227 Male, age 72, unknown 35.8
2725 Female, age 75, unknown 35.8
1954 Female, age 42, unknown 34.1
Substantia nigra
nTPM: 52.6
2409 Female, age 72, unknown 63.8
1916 Female, age 42, unknown 60.9
2583 Male, age 75, right hemisphere 59.0
1851 Male, age 51, unknown 53.3
2241 Male, age 72, unknown 51.8
2590 Female, age 75, unknown 51.8
2699 Male, age 18, unknown 50.2
1941 Male, age 53, unknown 46.6
2665 Male, age 74, both hemispheres 45.3
1889 Female, age 72, unknown 43.3
Superior colliculus
nTPM: 41.8
1796 Male, age 53, unknown 46.4
2664 Male, age 75, both hemispheres 44.7
1895 Male, age 76, right hemisphere 43.7
2087 Female, age 72, unknown 43.5
2668 Female, age 75, unknown 42.1
2587 Male, age 74, left hemisphere 41.5
2261 Male, age 18, unknown 41.2
1913 Female, age 42, unknown 39.7
1839 Male, age 51, unknown 39.3
1995 Male, age 72, unknown 35.6
Ventral tegmental area
nTPM: 43.3
1915 Female, age 42, unknown 48.5
2218 Male, age 76, both hemispheres 44.7
1942 Male, age 51, unknown 44.0
2410 Female, age 72, unknown 42.8
2021 Male, age 53, unknown 41.4
2223 Female, age 72, unknown 38.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.9
Samples: 139

Max nTPM: 20.3
Min nTPM: 4.9
Std nTPM: 2.4
Median nTPM: 9.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 20.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 15.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 15.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 15.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 15.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 14.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 14.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 14.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 13.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.1
FF:10158-103A5 76 years, female 20.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.1
Samples: 4

Max nTPM: 28.8
Min nTPM: 27.6
Sample A Female 28.8
Sample B Female 27.8
Sample C Male 27.6
Sample D Male 28.1
Midbrain
nTPM: 30.3
Samples: 4

Max nTPM: 35.6
Min nTPM: 23.9
Sample A Female 35.6
Sample B Female 28.6
Sample C Male 32.9
Sample D Male 23.9
Periaqueductal gray
nTPM: 29.9
Samples: 3

Max nTPM: 31.0
Min nTPM: 28.4
Sample B Female 31.0
Sample C Male 30.2
Sample D Male 28.4
Superior colliculi
nTPM: 29.6
Samples: 4

Max nTPM: 36.4
Min nTPM: 26.4
Sample A Female 26.4
Sample B Female 27.3
Sample C Male 36.4
Sample D Male 28.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 14.3
Min nTPM: 13.2
Sample A Male 14.3
Sample B Male 14.3
Sample C Female 13.9
Sample D Female 13.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68745048 Antisense, RP_050210_01_B08, Mouse strain C57BL/6J (56 days, male) 0.2

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