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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OGDHL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
139.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
120.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
98.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
89.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
88.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
88.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
86.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
83.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
82.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
80.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
79.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
77.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
74.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
71.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
69.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
68.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
68.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
64.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
64.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
64.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
63.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
62.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
61.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
61.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
60.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
60.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
59.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
58.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
58.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
57.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
56.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
55.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
53.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
52.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
52.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
50.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
49.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
48.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
48.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
48.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
48.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
48.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
48.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
47.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
47.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
47.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
47.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
47.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
47.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
46.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
46.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
46.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
46.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
46.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
45.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
45.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
44.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
43.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
43.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
42.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
42.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
41.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
41.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
40.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
40.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
40.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
40.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
40.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
39.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
39.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
38.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
38.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
37.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
37.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
36.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
36.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
36.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
36.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
36.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
36.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
35.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
35.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
34.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
34.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
33.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
33.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
33.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
33.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
32.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
31.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
31.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
31.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
31.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
31.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
30.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
30.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
28.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
27.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
26.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
25.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
24.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
24.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
23.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
20.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
19.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
19.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
19.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OGDHL is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.1
Number of samples
231
Samples
Sample
Description
TPM
DO23512
0 years, male, NA, stage:1, alive, 1260 days
96.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
86.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
85.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
82.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
75.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
72.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
70.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
68.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
65.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
64.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
64.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
61.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
61.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
60.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
59.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
58.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
58.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
58.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
58.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
57.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
56.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
56.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
55.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
54.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
54.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
53.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
52.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
52.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
52.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
51.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
51.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
50.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
50.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
48.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
48.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
48.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
48.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
47.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
46.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
46.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
45.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
45.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
44.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
44.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
44.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
43.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
42.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
42.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
41.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
41.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
40.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
40.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
40.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
39.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
39.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
38.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
38.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
38.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
37.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
37.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
35.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
35.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
34.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
31.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
30.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
30.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
27.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
27.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
26.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
24.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
23.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
1.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
1.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.2
695
Tumor
1.1
513
Tumor
1.1
627
Tumor
1.0
452
Normal
0.9
128
Normal
0.9
365
Tumor
0.9
186
Normal
0.8
423
Tumor
0.8
214
Normal
0.8
648
Normal
0.8
615
Tumor
0.8
227
Tumor
0.8
698
Normal
0.8
436
Normal
0.8
172
Normal
0.8
196
Normal
0.7
534
Normal
0.7
636
Normal
0.7
342
Normal
0.7
448
Normal
0.7
358
Normal
0.7
114
Normal
0.7
924
Normal
0.7
981
Tumor
0.7
746
Normal
0.7
862
Normal
0.7
361
Tumor
0.7
568
Normal
0.7
462
Normal
0.7
414
Normal
0.7
222
Normal
0.7
426
Normal
0.7
1032
Normal
0.7
864
Normal
0.7
411
Tumor
0.6
858
Normal
0.6
1022
Normal
0.6
132
Normal
0.6
314
Normal
0.6
564
Normal
0.6
618
Normal
0.6
332
Normal
0.6
162
Normal
0.6
756
Normal
0.6
412
Normal
0.6
466
Normal
0.6
922
Normal
0.6
422
Normal
0.6
745
Tumor
0.6
278
Normal
0.6
468
Normal
0.6
882
Normal
0.6
1026
Normal
0.6
356
Normal
0.6
138
Normal
0.6
824
Normal
0.6
142
Normal
0.6
546
Normal
0.6
642
Normal
0.6
912
Normal
0.5
298
Normal
0.5
354
Normal
0.5
148
Normal
0.5
388
Normal
0.5
428
Normal
0.5
232
Normal
0.5
944
Normal
0.5
424
Normal
0.5
376
Normal
0.5
554
Normal
0.5
145
Tumor
0.5
344
Normal
0.5
1046
Normal
0.5
742
Normal
0.5
228
Normal
0.5
954
Normal
0.5
982
Normal
0.5
616
Normal
0.5
868
Normal
0.5
136
Normal
0.5
446
Normal
0.5
672
Normal
0.5
257
Tumor
0.5
738
Normal
0.5
328
Normal
0.5
976
Normal
0.5
818
Normal
0.5
1014
Normal
0.5
111
Normal
0.5
914
Normal
0.5
666
Normal
0.5
416
Normal
0.5
723
Tumor
0.5
878
Normal
0.4
464
Normal
0.4
494
Normal
0.4
484
Normal
0.4
488
Normal
0.4
366
Normal
0.4
722
Normal
0.4
786
Normal
0.4
938
Normal
0.4
696
Normal
0.4
472
Normal
0.4
866
Normal
0.4
662
Normal
0.4
628
Normal
0.4
432
Normal
0.4
964
Normal
0.4
1042
Normal
0.4
364
Normal
0.4
926
Normal
0.4
286
Normal
0.4
714
Normal
0.4
518
Normal
0.4
874
Normal
0.4
312
Normal
0.4
664
Normal
0.4
516
Normal
0.4
716
Normal
0.4
352
Normal
0.4
218
Normal
0.4
258
Normal
0.3
686
Normal
0.3
272
Normal
0.3
571
Tumor
0.3
474
Normal
0.3
392
Normal
0.3
952
Normal
0.3
574
Normal
0.3
538
Normal
0.3
528
Normal
0.3
728
Normal
0.3
1044
Normal
0.3
852
Normal
0.3
124
Normal
0.3
284
Normal
0.3
1016
Normal
0.3
958
Normal
0.3
572
Normal
0.3
713
Tumor
0.3
514
Normal
0.3
482
Normal
0.3
362
Normal
0.3
744
Normal
0.3
456
Normal
0.3
386
Normal
0.3
816
Normal
0.3
884
Normal
0.3
968
Normal
0.3
873
Tumor
0.3
918
Normal
0.3
146
Normal
0.3
956
Normal
0.2
126
Normal
0.2
212
Normal
0.2
867
Tumor
0.2
465
Tumor
0.2
384
Normal
0.2
563
Tumor
0.2
188
Normal
0.2
394
Normal
0.2
558
Normal
0.2
778
Normal
0.2
984
Normal
0.2
262
Normal
0.2
396
Normal
0.2
966
Normal
0.2
515
Tumor
0.2
524
Normal
0.1
224
Normal
0.1
1028
Normal
0.1
478
Normal
0.1
434
Normal
0.1
268
Normal
0.1
127
Tumor
0.1
481
Tumor
0.1
526
Normal
0.1
955
Tumor
0.1
492
Normal
0.0
785
Tumor
0.0
191
Tumor
0.0
823
Tumor
0.0
368
Normal
0.0
978
Normal
0.0
911
Tumor
0.0
498
Normal
0.0
1045
Tumor
0.0
477
Tumor
-0.1
741
Tumor
-0.1
195
Tumor
-0.1
444
Normal
-0.1
916
Normal
-0.1
141
Tumor
-0.1
857
Tumor
-0.1
431
Tumor
-0.2
112
Tumor
-0.2
915
Tumor
-0.2
137
Tumor
-0.2
967
Tumor
-0.2
357
Tumor
-0.2
135
Tumor
-0.2
483
Tumor
-0.2
721
Tumor
-0.2
161
Tumor
-0.2
192
Normal
-0.2
953
Tumor
-0.3
536
Normal
-0.3
393
Tumor
-0.3
313
Tumor
-0.3
445
Tumor
-0.4
1043
Tumor
-0.4
493
Tumor
-0.4
185
Tumor
-0.4
755
Tumor
-0.4
1025
Tumor
-0.4
415
Tumor
-0.4
861
Tumor
-0.4
925
Tumor
-0.4
353
Tumor
-0.4
421
Tumor
-0.5
213
Tumor
-0.5
231
Tumor
-0.5
557
Tumor
-0.5
1041
Tumor
-0.5
217
Tumor
-0.5
963
Tumor
-0.5
617
Tumor
-0.5
461
Tumor
-0.5
297
Tumor
-0.5
187
Tumor
-0.5
267
Tumor
-0.5
863
Tumor
-0.5
497
Tumor
-0.6
635
Tumor
-0.6
443
Tumor
-0.6
261
Tumor
-0.6
777
Tumor
-0.6
433
Tumor
-0.6
447
Tumor
-0.6
881
Tumor
-0.7
957
Tumor
-0.7
451
Tumor
-0.7
814
Normal
-0.7
727
Tumor
-0.8
923
Tumor
-0.8
553
Tumor
-0.8
125
Tumor
-0.8
113
Tumor
-0.8
943
Tumor
-0.8
355
Tumor
-0.9
883
Tumor
-0.9
277
Tumor
-0.9
435
Tumor
-0.9
491
Tumor
-0.9
363
Tumor
-0.9
567
Tumor
-0.9
327
Tumor
-1.0
171
Tumor
-1.0
913
Tumor
-1.0
697
Tumor
-1.1
487
Tumor
-1.1
473
Tumor
-1.1
813
Tumor
-1.1
537
Tumor
-1.1
467
Tumor
-1.1
1015
Tumor
-1.1
641
Tumor
-1.1
375
Tumor
-1.2
413
Tumor
-1.2
223
Tumor
-1.2
975
Tumor
-1.2
383
Tumor
-1.2
341
Tumor
-1.2
343
Tumor
-1.2
665
Tumor
-1.2
647
Tumor
-1.3
917
Tumor
-1.3
221
Tumor
-1.3
527
Tumor
-1.3
471
Tumor
-1.3
851
Tumor
-1.3
427
Tumor
-1.3
463
Tumor
-1.3
1013
Tumor
-1.3
737
Tumor
-1.3
425
Tumor
-1.3
147
Tumor
-1.3
573
Tumor
-1.3
285
Tumor
-1.4
715
Tumor
-1.4
311
Tumor
-1.4
211
Tumor
-1.4
877
Tumor
-1.4
283
Tumor
-1.4
517
Tumor
-1.4
331
Tumor
-1.5
123
Tumor
-1.5
391
Tumor
-1.5
937
Tumor
-1.5
455
Tumor
-1.5
865
Tumor
-1.5
385
Tumor
-1.5
525
Tumor
-1.6
523
Tumor
-1.6
367
Tumor
-1.6
351
Tumor
-1.6
685
Tumor
-1.6
663
Tumor
-1.6
743
Tumor
-1.6
387
Tumor
-1.7
671
Tumor
-1.7
535
Tumor
-1.7
1021
Tumor
-1.7
977
Tumor
-1.7
545
Tumor
-1.8
395
Tumor
-1.8
815
Tumor
-1.8
271
Tumor
-1.8
983
Tumor
-1.8
533
Tumor
-1.8
131
Tumor
-1.8
1031
Tumor
-1.9
817
Tumor
-1.9
921
Tumor
-2.0
951
Tumor
-2.0
661
Tumor
-2.0
965
Tumor
-2.0
724
Normal
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
