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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CYP2B6 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
788.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
300.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
294.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
256.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
251.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
249.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
229.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
226.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
226.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
203.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
190.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
173.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
171.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
167.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
164.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
144.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
126.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
125.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
120.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
115.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
113.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
112.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
109.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
108.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
106.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
106.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
97.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
90.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
90.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
90.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
87.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
87.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
84.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
83.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
82.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
82.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
81.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
78.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
77.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
75.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
75.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
75.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
74.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
74.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
72.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
72.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
71.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
71.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
69.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
68.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
68.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
67.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
66.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
65.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
65.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
65.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
63.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
63.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
60.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
58.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
58.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
54.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
53.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
49.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
48.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
47.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
47.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
47.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
47.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
47.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
46.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
46.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
46.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
44.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
43.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
42.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
40.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
40.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
38.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
37.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
37.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
37.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
36.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
36.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
35.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
35.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
35.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
33.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
33.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
32.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
31.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
31.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
31.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
29.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
29.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
28.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
27.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
21.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
19.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
18.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
4.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CYP2B6 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
74.1
Number of samples
231
Samples
Sample
Description
TPM
DO45195
0 years, male, NA, stage:1, alive, 390 days
737.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
668.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
504.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
494.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
428.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
391.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
373.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
373.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
370.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
354.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
323.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
318.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
313.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
313.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
310.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
301.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
293.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
282.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
276.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
260.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
227.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
224.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
217.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
209.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
193.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
187.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
186.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
180.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
179.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
177.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
176.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
170.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
165.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
159.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
158.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
154.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
153.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
150.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
144.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
142.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
141.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
138.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
134.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
131.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
126.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
120.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
119.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
113.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
108.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
108.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
107.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
106.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
105.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
102.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
101.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
101.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
100.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
98.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
96.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
96.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
95.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
91.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
85.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
82.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
81.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
73.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
71.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
71.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
68.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
68.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
63.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
63.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
60.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
59.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
59.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
58.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
58.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
56.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
53.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
52.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
49.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
49.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
49.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
48.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
47.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
47.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
45.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
44.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
40.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
40.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
40.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
40.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
38.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
36.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
32.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
32.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
32.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
32.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
28.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
28.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
488
Normal
1.9
1046
Normal
1.5
388
Normal
1.5
938
Normal
1.5
426
Normal
1.3
862
Normal
1.3
818
Normal
1.3
298
Normal
1.3
462
Normal
1.3
196
Normal
1.2
698
Normal
1.2
114
Normal
1.2
723
Tumor
1.1
172
Normal
1.1
864
Normal
1.1
954
Normal
1.1
618
Normal
1.1
568
Normal
1.1
214
Normal
1.1
358
Normal
1.1
132
Normal
1.1
968
Normal
1.1
882
Normal
1.1
874
Normal
1.0
1032
Normal
1.0
278
Normal
1.0
1022
Normal
1.0
546
Normal
1.0
756
Normal
1.0
918
Normal
1.0
924
Normal
1.0
356
Normal
1.0
128
Normal
1.0
716
Normal
1.0
414
Normal
1.0
1026
Normal
1.0
494
Normal
1.0
714
Normal
1.0
648
Normal
1.0
666
Normal
1.0
186
Normal
0.9
422
Normal
0.9
514
Normal
0.9
955
Tumor
0.9
662
Normal
0.9
982
Normal
0.9
534
Normal
0.9
1044
Normal
0.9
746
Normal
0.9
474
Normal
0.9
162
Normal
0.9
446
Normal
0.9
428
Normal
0.8
424
Normal
0.8
744
Normal
0.8
466
Normal
0.8
342
Normal
0.8
922
Normal
0.8
572
Normal
0.8
394
Normal
0.8
742
Normal
0.8
528
Normal
0.8
722
Normal
0.8
786
Normal
0.8
664
Normal
0.8
912
Normal
0.8
482
Normal
0.8
222
Normal
0.8
915
Tumor
0.8
362
Normal
0.8
884
Normal
0.8
914
Normal
0.8
188
Normal
0.8
554
Normal
0.8
366
Normal
0.7
332
Normal
0.7
616
Normal
0.7
617
Tumor
0.7
1042
Normal
0.7
956
Normal
0.7
452
Normal
0.7
518
Normal
0.7
464
Normal
0.7
1028
Normal
0.7
312
Normal
0.7
976
Normal
0.7
1016
Normal
0.7
738
Normal
0.7
142
Normal
0.7
352
Normal
0.7
1045
Tumor
0.7
448
Normal
0.7
364
Normal
0.6
376
Normal
0.6
436
Normal
0.6
978
Normal
0.6
728
Normal
0.6
286
Normal
0.6
224
Normal
0.6
964
Normal
0.6
228
Normal
0.6
314
Normal
0.6
484
Normal
0.6
926
Normal
0.6
468
Normal
0.6
952
Normal
0.6
138
Normal
0.5
456
Normal
0.5
564
Normal
0.5
526
Normal
0.5
628
Normal
0.5
816
Normal
0.5
866
Normal
0.5
636
Normal
0.5
868
Normal
0.5
642
Normal
0.5
944
Normal
0.5
481
Tumor
0.5
672
Normal
0.5
1014
Normal
0.5
284
Normal
0.5
111
Normal
0.5
344
Normal
0.5
574
Normal
0.4
272
Normal
0.4
858
Normal
0.4
516
Normal
0.4
212
Normal
0.4
416
Normal
0.4
824
Normal
0.4
878
Normal
0.4
958
Normal
0.4
472
Normal
0.4
232
Normal
0.4
966
Normal
0.4
558
Normal
0.4
696
Normal
0.4
328
Normal
0.3
852
Normal
0.3
354
Normal
0.3
148
Normal
0.3
187
Tumor
0.3
218
Normal
0.3
423
Tumor
0.3
268
Normal
0.3
412
Normal
0.3
386
Normal
0.3
392
Normal
0.3
192
Normal
0.2
136
Normal
0.2
873
Tumor
0.2
384
Normal
0.2
981
Tumor
0.2
785
Tumor
0.2
258
Normal
0.2
434
Normal
0.2
126
Normal
0.2
396
Normal
0.2
1041
Tumor
0.2
778
Normal
0.2
415
Tumor
0.1
261
Tumor
0.1
627
Tumor
0.1
515
Tumor
0.1
615
Tumor
0.1
146
Normal
0.1
686
Normal
0.1
432
Normal
0.0
916
Normal
0.0
984
Normal
0.0
461
Tumor
0.0
262
Normal
0.0
353
Tumor
0.0
741
Tumor
0.0
124
Normal
0.0
492
Normal
-0.1
863
Tumor
-0.1
478
Normal
-0.1
498
Normal
-0.2
191
Tumor
-0.2
745
Tumor
-0.2
867
Tumor
-0.3
538
Normal
-0.3
217
Tumor
-0.3
444
Normal
-0.3
911
Tumor
-0.3
421
Tumor
-0.3
433
Tumor
-0.3
513
Tumor
-0.3
465
Tumor
-0.3
524
Normal
-0.3
721
Tumor
-0.4
368
Normal
-0.4
647
Tumor
-0.4
861
Tumor
-0.4
223
Tumor
-0.4
141
Tumor
-0.5
365
Tumor
-0.5
913
Tumor
-0.5
977
Tumor
-0.5
161
Tumor
-0.5
477
Tumor
-0.5
137
Tumor
-0.5
145
Tumor
-0.6
695
Tumor
-0.6
1043
Tumor
-0.6
1027
Tumor
-0.6
355
Tumor
-0.6
857
Tumor
-0.6
195
Tumor
-0.6
755
Tumor
-0.7
297
Tumor
-0.7
357
Tumor
-0.7
112
Tumor
-0.7
571
Tumor
-0.8
185
Tumor
-0.8
777
Tumor
-0.8
473
Tumor
-0.8
487
Tumor
-0.8
713
Tumor
-0.8
641
Tumor
-0.8
715
Tumor
-0.8
447
Tumor
-0.8
435
Tumor
-0.8
361
Tumor
-0.9
563
Tumor
-0.9
327
Tumor
-0.9
451
Tumor
-0.9
445
Tumor
-0.9
393
Tumor
-0.9
881
Tumor
-0.9
975
Tumor
-0.9
814
Normal
-0.9
127
Tumor
-0.9
823
Tumor
-0.9
917
Tumor
-0.9
467
Tumor
-0.9
923
Tumor
-0.9
213
Tumor
-0.9
267
Tumor
-1.0
113
Tumor
-1.0
341
Tumor
-1.0
943
Tumor
-1.0
536
Normal
-1.0
171
Tumor
-1.0
727
Tumor
-1.0
493
Tumor
-1.0
953
Tumor
-1.0
963
Tumor
-1.0
491
Tumor
-1.0
427
Tumor
-1.0
221
Tumor
-1.0
455
Tumor
-1.0
431
Tumor
-1.0
277
Tumor
-1.0
411
Tumor
-1.1
483
Tumor
-1.1
665
Tumor
-1.1
147
Tumor
-1.1
413
Tumor
-1.1
227
Tumor
-1.1
663
Tumor
-1.1
883
Tumor
-1.1
1031
Tumor
-1.1
813
Tumor
-1.2
697
Tumor
-1.2
463
Tumor
-1.2
443
Tumor
-1.2
737
Tumor
-1.2
1025
Tumor
-1.2
363
Tumor
-1.2
391
Tumor
-1.3
425
Tumor
-1.3
395
Tumor
-1.3
851
Tumor
-1.3
343
Tumor
-1.3
135
Tumor
-1.3
635
Tumor
-1.3
724
Normal
-1.3
567
Tumor
-1.3
471
Tumor
-1.3
865
Tumor
-1.3
387
Tumor
-1.4
1015
Tumor
-1.4
123
Tumor
-1.4
383
Tumor
-1.4
497
Tumor
-1.4
557
Tumor
-1.4
925
Tumor
-1.4
527
Tumor
-1.4
1013
Tumor
-1.4
1021
Tumor
-1.4
125
Tumor
-1.4
313
Tumor
-1.5
331
Tumor
-1.5
283
Tumor
-1.5
685
Tumor
-1.5
877
Tumor
-1.5
951
Tumor
-1.5
285
Tumor
-1.5
311
Tumor
-1.5
545
Tumor
-1.5
957
Tumor
-1.6
921
Tumor
-1.6
671
Tumor
-1.6
553
Tumor
-1.6
375
Tumor
-1.6
937
Tumor
-1.6
815
Tumor
-1.6
211
Tumor
-1.6
573
Tumor
-1.6
743
Tumor
-1.6
351
Tumor
-1.6
523
Tumor
-1.7
817
Tumor
-1.7
533
Tumor
-1.7
535
Tumor
-1.7
983
Tumor
-1.7
965
Tumor
-1.7
131
Tumor
-1.7
231
Tumor
-1.7
525
Tumor
-1.7
271
Tumor
-1.7
967
Tumor
-1.8
257
Tumor
-1.8
385
Tumor
-1.8
537
Tumor
-1.9
517
Tumor
-1.9
367
Tumor
-1.9
661
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
