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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PELI1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PELI1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.5
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
29.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
11.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
817
Tumor
1.4
545
Tumor
1.0
414
Normal
0.9
424
Normal
0.9
428
Normal
0.8
1026
Normal
0.7
546
Normal
0.7
534
Normal
0.7
426
Normal
0.6
425
Tumor
0.6
1032
Normal
0.6
1025
Tumor
0.6
527
Tumor
0.6
422
Normal
0.6
528
Normal
0.6
1042
Normal
0.6
526
Normal
0.5
427
Tumor
0.5
857
Tumor
0.4
1028
Normal
0.4
413
Tumor
0.4
516
Normal
0.4
818
Normal
0.4
518
Normal
0.4
661
Tumor
0.4
497
Tumor
0.3
1046
Normal
0.3
514
Normal
0.3
487
Tumor
0.3
491
Tumor
0.3
421
Tumor
0.3
671
Tumor
0.2
697
Tumor
0.2
1021
Tumor
0.2
698
Normal
0.2
483
Tumor
0.2
535
Tumor
0.2
537
Tumor
0.2
1022
Normal
0.2
536
Normal
0.2
423
Tumor
0.2
1041
Tumor
0.2
1044
Normal
0.1
494
Normal
0.1
447
Tumor
0.1
515
Tumor
0.1
448
Normal
0.1
498
Normal
0.1
488
Normal
0.1
858
Normal
0.0
672
Normal
0.0
517
Tumor
0.0
824
Normal
0.0
851
Tumor
0.0
1031
Tumor
0.0
815
Tumor
0.0
493
Tumor
-0.1
492
Normal
-0.1
662
Normal
-0.1
823
Tumor
-0.1
524
Normal
-0.1
538
Normal
-0.1
1045
Tumor
-0.1
852
Normal
-0.2
666
Normal
-0.2
484
Normal
-0.2
553
Tumor
-0.2
525
Tumor
-0.2
554
Normal
-0.2
816
Normal
-0.2
664
Normal
-0.3
665
Tumor
-0.3
648
Normal
-0.3
533
Tumor
-0.3
1043
Tumor
-0.3
647
Tumor
-0.4
663
Tumor
-0.4
513
Tumor
-0.5
523
Tumor
-0.5
1027
Tumor
-0.6
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
755
Tumor
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
777
Tumor
N/A
415
Tumor
N/A
778
Normal
N/A
416
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
