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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GTF2E2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
40.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
31.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
30.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
30.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
30.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
21.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
18.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
15.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GTF2E2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.6
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
72.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
59.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
27.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
23.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
18.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.0
937
Tumor
1.0
1031
Tumor
0.9
211
Tumor
0.9
951
Tumor
0.9
427
Tumor
0.9
351
Tumor
0.8
943
Tumor
0.8
497
Tumor
0.8
535
Tumor
0.8
113
Tumor
0.7
123
Tumor
0.7
411
Tumor
0.7
413
Tumor
0.7
661
Tumor
0.7
743
Tumor
0.6
425
Tumor
0.6
965
Tumor
0.6
724
Normal
0.6
285
Tumor
0.6
921
Tumor
0.6
755
Tumor
0.6
467
Tumor
0.6
383
Tumor
0.6
147
Tumor
0.6
967
Tumor
0.6
663
Tumor
0.5
983
Tumor
0.5
671
Tumor
0.5
745
Tumor
0.5
1021
Tumor
0.5
393
Tumor
0.5
851
Tumor
0.5
283
Tumor
0.5
363
Tumor
0.5
125
Tumor
0.5
817
Tumor
0.5
537
Tumor
0.5
447
Tumor
0.5
567
Tumor
0.5
391
Tumor
0.5
367
Tumor
0.4
385
Tumor
0.4
331
Tumor
0.4
865
Tumor
0.4
141
Tumor
0.4
355
Tumor
0.4
665
Tumor
0.4
536
Normal
0.4
463
Tumor
0.4
311
Tumor
0.4
913
Tumor
0.4
313
Tumor
0.4
227
Tumor
0.4
433
Tumor
0.3
977
Tumor
0.3
257
Tumor
0.3
191
Tumor
0.3
861
Tumor
0.3
455
Tumor
0.3
814
Normal
0.3
1043
Tumor
0.3
975
Tumor
0.3
533
Tumor
0.3
647
Tumor
0.3
697
Tumor
0.3
395
Tumor
0.3
777
Tumor
0.3
387
Tumor
0.3
465
Tumor
0.2
881
Tumor
0.2
327
Tumor
0.2
187
Tumor
0.2
213
Tumor
0.2
131
Tumor
0.2
1015
Tumor
0.2
443
Tumor
0.2
917
Tumor
0.2
877
Tumor
0.2
161
Tumor
0.2
925
Tumor
0.2
435
Tumor
0.2
195
Tumor
0.2
415
Tumor
0.2
451
Tumor
0.2
493
Tumor
0.2
554
Normal
0.2
617
Tumor
0.1
513
Tumor
0.1
461
Tumor
0.1
966
Normal
0.1
923
Tumor
0.1
136
Normal
0.1
524
Normal
0.1
135
Tumor
0.1
217
Tumor
0.1
523
Tumor
0.1
955
Tumor
0.1
126
Normal
0.1
716
Normal
0.1
696
Normal
0.1
641
Tumor
0.1
517
Tumor
0.1
384
Normal
0.1
627
Tumor
0.1
815
Tumor
0.1
864
Normal
0.1
672
Normal
0.1
628
Normal
0.1
362
Normal
0.1
1028
Normal
0.1
862
Normal
0.1
416
Normal
0.1
563
Tumor
0.1
1013
Tumor
0.1
553
Tumor
0.1
188
Normal
0.1
968
Normal
0.1
491
Tumor
0.1
487
Tumor
0.0
866
Normal
0.0
434
Normal
0.0
112
Tumor
0.0
341
Tumor
0.0
816
Normal
0.0
268
Normal
0.0
958
Normal
0.0
952
Normal
0.0
124
Normal
0.0
421
Tumor
0.0
884
Normal
0.0
813
Tumor
0.0
498
Normal
0.0
564
Normal
0.0
686
Normal
0.0
368
Normal
0.0
573
Tumor
0.0
545
Tumor
0.0
423
Tumor
0.0
635
Tumor
0.0
642
Normal
0.0
525
Tumor
0.0
558
Normal
0.0
494
Normal
0.0
221
Tumor
0.0
286
Normal
0.0
956
Normal
0.0
868
Normal
0.0
114
Normal
0.0
137
Tumor
0.0
396
Normal
0.0
568
Normal
0.0
431
Tumor
0.0
714
Normal
0.0
746
Normal
0.0
528
Normal
0.0
111
Normal
0.0
412
Normal
0.0
444
Normal
0.0
912
Normal
0.0
914
Normal
0.0
127
Tumor
0.0
863
Tumor
0.0
343
Tumor
0.0
918
Normal
0.0
1045
Tumor
0.0
146
Normal
0.0
357
Tumor
0.0
328
Normal
0.0
571
Tumor
0.0
1025
Tumor
0.0
721
Tumor
0.0
128
Normal
0.0
436
Normal
-0.1
192
Normal
-0.1
138
Normal
-0.1
915
Tumor
-0.1
874
Normal
-0.1
916
Normal
-0.1
722
Normal
-0.1
1016
Normal
-0.1
818
Normal
-0.1
492
Normal
-0.1
376
Normal
-0.1
364
Normal
-0.1
873
Tumor
-0.1
448
Normal
-0.1
938
Normal
-0.1
713
Tumor
-0.1
386
Normal
-0.1
662
Normal
-0.1
778
Normal
-0.1
518
Normal
-0.1
574
Normal
-0.1
557
Tumor
-0.1
218
Normal
-0.1
963
Tumor
-0.1
353
Tumor
-0.1
685
Tumor
-0.1
145
Tumor
-0.1
878
Normal
-0.1
262
Normal
-0.1
267
Tumor
-0.1
615
Tumor
-0.1
366
Normal
-0.1
446
Normal
-0.1
223
Tumor
-0.1
723
Tumor
-0.1
148
Normal
-0.1
944
Normal
-0.1
636
Normal
-0.1
911
Tumor
-0.1
1042
Normal
-0.1
616
Normal
-0.1
924
Normal
-0.1
284
Normal
-0.1
473
Tumor
-0.1
786
Normal
-0.1
228
Normal
-0.1
926
Normal
-0.1
824
Normal
-0.1
277
Tumor
-0.1
312
Normal
-0.1
1026
Normal
-0.1
352
Normal
-0.1
361
Tumor
-0.1
954
Normal
-0.1
572
Normal
-0.1
212
Normal
-0.1
142
Normal
-0.1
1022
Normal
-0.1
922
Normal
-0.1
666
Normal
-0.1
883
Tumor
-0.1
534
Normal
-0.1
344
Normal
-0.1
456
Normal
-0.1
618
Normal
-0.1
741
Tumor
-0.1
882
Normal
-0.1
978
Normal
-0.1
354
Normal
-0.1
857
Tumor
-0.1
823
Tumor
-0.1
742
Normal
-0.1
132
Normal
-0.1
756
Normal
-0.1
185
Tumor
-0.1
297
Tumor
-0.1
527
Tumor
-0.1
728
Normal
-0.1
488
Normal
-0.1
375
Tumor
-0.1
852
Normal
-0.2
224
Normal
-0.2
298
Normal
-0.2
858
Normal
-0.2
358
Normal
-0.2
478
Normal
-0.2
526
Normal
-0.2
186
Normal
-0.2
715
Tumor
-0.2
258
Normal
-0.2
356
Normal
-0.2
1027
Tumor
-0.2
272
Normal
-0.2
428
Normal
-0.2
546
Normal
-0.2
388
Normal
-0.2
976
Normal
-0.2
365
Tumor
-0.2
466
Normal
-0.2
1044
Normal
-0.2
468
Normal
-0.2
214
Normal
-0.2
314
Normal
-0.2
474
Normal
-0.2
394
Normal
-0.2
222
Normal
-0.2
232
Normal
-0.2
162
Normal
-0.2
1032
Normal
-0.2
664
Normal
-0.2
1014
Normal
-0.2
964
Normal
-0.2
953
Tumor
-0.2
515
Tumor
-0.2
516
Normal
-0.2
737
Tumor
-0.2
196
Normal
-0.2
648
Normal
-0.2
538
Normal
-0.2
464
Normal
-0.3
271
Tumor
-0.3
462
Normal
-0.3
484
Normal
-0.3
477
Tumor
-0.3
278
Normal
-0.3
422
Normal
-0.3
744
Normal
-0.3
982
Normal
-0.3
514
Normal
-0.3
172
Normal
-0.3
432
Normal
-0.3
738
Normal
-0.3
261
Tumor
-0.3
984
Normal
-0.3
695
Tumor
-0.3
472
Normal
-0.3
471
Tumor
-0.3
445
Tumor
-0.3
452
Normal
-0.3
332
Normal
-0.3
483
Tumor
-0.3
867
Tumor
-0.3
981
Tumor
-0.3
1041
Tumor
-0.4
392
Normal
-0.4
1046
Normal
-0.4
231
Tumor
-0.4
698
Normal
-0.4
424
Normal
-0.4
414
Normal
-0.4
785
Tumor
-0.4
342
Normal
-0.4
482
Normal
-0.4
426
Normal
-0.5
171
Tumor
-0.5
481
Tumor
-0.5
727
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
