We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C1D is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
34.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
24.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
23.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
17.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
C1D is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.8
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
35.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
33.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
30.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
28.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
20.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
19.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
15.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
814
Normal
1.0
951
Tumor
1.0
535
Tumor
0.9
497
Tumor
0.9
813
Tumor
0.9
965
Tumor
0.9
327
Tumor
0.9
533
Tumor
0.9
743
Tumor
0.8
724
Normal
0.8
923
Tumor
0.8
925
Tumor
0.7
883
Tumor
0.7
937
Tumor
0.7
858
Normal
0.7
913
Tumor
0.7
967
Tumor
0.6
123
Tumor
0.6
187
Tumor
0.6
818
Normal
0.6
877
Tumor
0.6
824
Normal
0.5
387
Tumor
0.5
493
Tumor
0.5
616
Normal
0.5
983
Tumor
0.5
395
Tumor
0.5
472
Normal
0.5
981
Tumor
0.5
943
Tumor
0.5
482
Normal
0.5
113
Tumor
0.5
741
Tumor
0.5
1015
Tumor
0.5
112
Tumor
0.5
351
Tumor
0.5
391
Tumor
0.5
213
Tumor
0.5
921
Tumor
0.5
777
Tumor
0.5
916
Normal
0.5
394
Normal
0.5
1045
Tumor
0.5
1013
Tumor
0.5
537
Tumor
0.4
685
Tumor
0.4
917
Tumor
0.4
881
Tumor
0.4
388
Normal
0.4
217
Tumor
0.4
816
Normal
0.4
415
Tumor
0.4
628
Normal
0.4
572
Normal
0.4
474
Normal
0.4
161
Tumor
0.4
385
Tumor
0.4
661
Tumor
0.4
192
Normal
0.4
642
Normal
0.4
396
Normal
0.4
852
Normal
0.3
786
Normal
0.3
386
Normal
0.3
462
Normal
0.3
481
Tumor
0.3
447
Tumor
0.3
227
Tumor
0.3
545
Tumor
0.3
433
Tumor
0.3
331
Tumor
0.3
367
Tumor
0.3
857
Tumor
0.3
527
Tumor
0.3
211
Tumor
0.3
487
Tumor
0.3
283
Tumor
0.3
558
Normal
0.3
444
Normal
0.3
536
Normal
0.3
413
Tumor
0.3
1014
Normal
0.3
392
Normal
0.3
498
Normal
0.3
755
Tumor
0.3
737
Tumor
0.2
132
Normal
0.2
957
Tumor
0.2
636
Normal
0.2
958
Normal
0.2
697
Tumor
0.2
383
Tumor
0.2
953
Tumor
0.2
465
Tumor
0.2
915
Tumor
0.2
984
Normal
0.2
212
Normal
0.2
285
Tumor
0.2
663
Tumor
0.2
954
Normal
0.2
494
Normal
0.2
446
Normal
0.2
568
Normal
0.2
538
Normal
0.2
284
Normal
0.2
978
Normal
0.2
411
Tumor
0.2
912
Normal
0.2
977
Tumor
0.2
817
Tumor
0.2
534
Normal
0.2
944
Normal
0.2
884
Normal
0.1
363
Tumor
0.1
483
Tumor
0.1
964
Normal
0.1
477
Tumor
0.1
727
Tumor
0.1
432
Normal
0.1
714
Normal
0.1
851
Tumor
0.1
564
Normal
0.1
815
Tumor
0.1
715
Tumor
0.1
882
Normal
0.1
341
Tumor
0.1
618
Normal
0.1
744
Normal
0.1
963
Tumor
0.1
528
Normal
0.1
142
Normal
0.1
141
Tumor
0.1
554
Normal
0.1
557
Tumor
0.1
627
Tumor
0.1
467
Tumor
0.1
976
Normal
0.1
224
Normal
0.1
956
Normal
0.1
434
Normal
0.1
756
Normal
0.1
451
Tumor
0.1
546
Normal
0.1
955
Tumor
0.1
721
Tumor
0.1
924
Normal
0.1
911
Tumor
0.1
463
Tumor
0.1
228
Normal
0.1
968
Normal
0.1
138
Normal
0.1
428
Normal
0.0
938
Normal
0.0
615
Tumor
0.0
473
Tumor
0.0
966
Normal
0.0
484
Normal
0.0
191
Tumor
0.0
412
Normal
0.0
1016
Normal
0.0
922
Normal
0.0
355
Tumor
0.0
738
Normal
0.0
553
Tumor
0.0
1046
Normal
0.0
268
Normal
0.0
878
Normal
0.0
221
Tumor
0.0
695
Tumor
0.0
742
Normal
0.0
478
Normal
0.0
436
Normal
0.0
647
Tumor
0.0
722
Normal
0.0
1044
Normal
0.0
975
Tumor
0.0
926
Normal
0.0
448
Normal
0.0
136
Normal
0.0
461
Tumor
0.0
918
Normal
0.0
286
Normal
0.0
571
Tumor
0.0
914
Normal
0.0
126
Normal
0.0
364
Normal
0.0
278
Normal
0.0
641
Tumor
0.0
424
Normal
0.0
277
Tumor
0.0
426
Normal
0.0
414
Normal
0.0
563
Tumor
0.0
195
Tumor
0.0
648
Normal
0.0
222
Normal
-0.1
328
Normal
-0.1
713
Tumor
-0.1
696
Normal
-0.1
823
Tumor
-0.1
125
Tumor
-0.1
778
Normal
-0.1
952
Normal
-0.1
261
Tumor
-0.1
357
Tumor
-0.1
145
Tumor
-0.1
665
Tumor
-0.1
746
Normal
-0.1
445
Tumor
-0.1
131
Tumor
-0.1
124
Normal
-0.1
686
Normal
-0.1
416
Normal
-0.1
313
Tumor
-0.1
384
Normal
-0.1
393
Tumor
-0.1
146
Normal
-0.1
188
Normal
-0.1
635
Tumor
-0.1
728
Normal
-0.1
716
Normal
-0.1
171
Tumor
-0.2
361
Tumor
-0.2
298
Normal
-0.2
452
Normal
-0.2
267
Tumor
-0.2
671
Tumor
-0.2
127
Tumor
-0.2
214
Normal
-0.2
471
Tumor
-0.2
423
Tumor
-0.2
431
Tumor
-0.2
982
Normal
-0.2
664
Normal
-0.2
135
Tumor
-0.2
223
Tumor
-0.2
352
Normal
-0.2
368
Normal
-0.2
114
Normal
-0.2
353
Tumor
-0.2
723
Tumor
-0.2
196
Normal
-0.2
443
Tumor
-0.2
491
Tumor
-0.2
698
Normal
-0.2
344
Normal
-0.2
218
Normal
-0.2
137
Tumor
-0.3
332
Normal
-0.3
354
Normal
-0.3
1043
Tumor
-0.3
232
Normal
-0.3
356
Normal
-0.3
455
Tumor
-0.3
365
Tumor
-0.3
662
Normal
-0.3
111
Normal
-0.3
358
Normal
-0.3
314
Normal
-0.3
342
Normal
-0.3
464
Normal
-0.3
456
Normal
-0.3
376
Normal
-0.3
567
Tumor
-0.3
362
Normal
-0.3
311
Tumor
-0.3
297
Tumor
-0.3
128
Normal
-0.3
148
Normal
-0.3
672
Normal
-0.4
666
Normal
-0.4
186
Normal
-0.4
185
Tumor
-0.4
573
Tumor
-0.4
257
Tumor
-0.4
422
Normal
-0.4
435
Tumor
-0.4
147
Tumor
-0.4
366
Normal
-0.4
466
Normal
-0.4
262
Normal
-0.4
745
Tumor
-0.4
312
Normal
-0.4
375
Tumor
-0.4
785
Tumor
-0.4
617
Tumor
-0.5
492
Normal
-0.5
468
Normal
-0.5
258
Normal
-0.5
343
Tumor
-0.6
488
Normal
-0.6
231
Tumor
-0.6
425
Tumor
-0.6
162
Normal
-0.6
427
Tumor
-0.6
172
Normal
-0.7
574
Normal
-0.8
272
Normal
-0.8
271
Tumor
-0.8
421
Tumor
-1.0
1022
Normal
N/A
1021
Tumor
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
864
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
