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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SULT1A2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
120.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
96.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
96.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
93.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
91.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
90.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
88.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
77.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
77.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
76.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
69.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
69.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
69.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
68.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
66.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
66.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
65.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
64.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
62.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
60.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
60.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
58.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
57.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
56.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
55.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
55.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
54.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
53.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
52.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
51.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
50.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
48.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
47.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
47.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
46.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
46.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
46.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
46.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
45.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
45.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
44.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
44.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
43.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
42.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
41.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
40.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
40.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
40.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
39.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
38.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
37.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
36.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
36.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
36.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
35.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
35.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
35.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
34.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
34.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
33.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
32.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
32.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
31.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
30.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
29.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
29.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
28.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
27.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
27.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
27.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
26.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
25.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
24.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
21.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
14.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
13.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SULT1A2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.7
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
61.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
59.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
58.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
56.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
56.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
53.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
53.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
52.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
49.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
48.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
47.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
42.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
42.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
38.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
37.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
35.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
34.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
31.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
30.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
29.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
17.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
1.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
824
Normal
1.5
878
Normal
1.5
912
Normal
1.4
564
Normal
1.4
114
Normal
1.4
128
Normal
1.4
284
Normal
1.3
648
Normal
1.3
618
Normal
1.2
132
Normal
1.2
364
Normal
1.1
452
Normal
1.1
426
Normal
1.1
436
Normal
1.1
278
Normal
1.1
258
Normal
1.1
518
Normal
1.1
312
Normal
1.1
332
Normal
1.1
446
Normal
1.1
488
Normal
1.1
314
Normal
1.1
484
Normal
1.1
722
Normal
1.1
642
Normal
1.1
723
Tumor
1.1
944
Normal
1.1
742
Normal
1.0
534
Normal
1.0
448
Normal
1.0
136
Normal
1.0
356
Normal
1.0
1042
Normal
1.0
126
Normal
1.0
148
Normal
1.0
868
Normal
0.9
394
Normal
0.9
568
Normal
0.9
862
Normal
0.9
344
Normal
0.9
228
Normal
0.9
628
Normal
0.9
298
Normal
0.8
354
Normal
0.8
456
Normal
0.8
214
Normal
0.8
816
Normal
0.8
716
Normal
0.8
366
Normal
0.8
976
Normal
0.8
222
Normal
0.8
616
Normal
0.8
1014
Normal
0.8
938
Normal
0.8
698
Normal
0.8
468
Normal
0.8
188
Normal
0.8
388
Normal
0.8
342
Normal
0.8
196
Normal
0.8
1022
Normal
0.8
464
Normal
0.8
482
Normal
0.8
1027
Tumor
0.8
462
Normal
0.8
883
Tumor
0.7
376
Normal
0.7
964
Normal
0.7
786
Normal
0.7
416
Normal
0.7
864
Normal
0.7
738
Normal
0.7
918
Normal
0.7
1016
Normal
0.7
714
Normal
0.7
514
Normal
0.7
465
Tumor
0.7
1044
Normal
0.7
636
Normal
0.7
924
Normal
0.7
952
Normal
0.7
232
Normal
0.7
352
Normal
0.7
558
Normal
0.6
412
Normal
0.6
392
Normal
0.6
286
Normal
0.6
111
Normal
0.6
444
Normal
0.6
867
Tumor
0.6
866
Normal
0.6
954
Normal
0.6
686
Normal
0.6
982
Normal
0.6
528
Normal
0.6
186
Normal
0.6
818
Normal
0.6
984
Normal
0.6
212
Normal
0.6
572
Normal
0.5
662
Normal
0.5
664
Normal
0.5
882
Normal
0.5
432
Normal
0.5
744
Normal
0.5
422
Normal
0.5
358
Normal
0.5
162
Normal
0.5
746
Normal
0.5
494
Normal
0.5
362
Normal
0.5
1032
Normal
0.5
466
Normal
0.5
481
Tumor
0.5
728
Normal
0.5
414
Normal
0.4
1026
Normal
0.4
546
Normal
0.4
914
Normal
0.4
922
Normal
0.4
428
Normal
0.4
515
Tumor
0.4
172
Normal
0.4
272
Normal
0.4
113
Tumor
0.4
958
Normal
0.4
858
Normal
0.3
666
Normal
0.3
721
Tumor
0.3
424
Normal
0.3
926
Normal
0.3
617
Tumor
0.3
874
Normal
0.3
368
Normal
0.3
695
Tumor
0.3
137
Tumor
0.3
696
Normal
0.3
423
Tumor
0.3
138
Normal
0.3
474
Normal
0.2
955
Tumor
0.2
956
Normal
0.2
516
Normal
0.2
672
Normal
0.2
386
Normal
0.2
627
Tumor
0.2
966
Normal
0.2
574
Normal
0.2
353
Tumor
0.2
756
Normal
0.2
513
Tumor
0.2
571
Tumor
0.2
778
Normal
0.2
884
Normal
0.2
142
Normal
0.2
384
Normal
0.2
533
Tumor
0.2
978
Normal
0.2
218
Normal
0.1
968
Normal
0.1
328
Normal
0.1
1046
Normal
0.1
396
Normal
0.1
472
Normal
0.0
981
Tumor
0.0
478
Normal
0.0
127
Tumor
0.0
365
Tumor
0.0
554
Normal
0.0
1028
Normal
0.0
492
Normal
0.0
852
Normal
0.0
267
Tumor
-0.1
857
Tumor
-0.1
526
Normal
-0.1
916
Normal
-0.1
192
Normal
-0.1
361
Tumor
-0.1
146
Normal
-0.1
911
Tumor
-0.1
357
Tumor
-0.1
434
Normal
-0.1
1013
Tumor
-0.1
393
Tumor
-0.1
268
Normal
-0.1
563
Tumor
-0.2
411
Tumor
-0.2
1041
Tumor
-0.2
538
Normal
-0.2
647
Tumor
-0.2
224
Normal
-0.2
641
Tumor
-0.2
741
Tumor
-0.2
435
Tumor
-0.2
925
Tumor
-0.3
498
Normal
-0.3
873
Tumor
-0.3
823
Tumor
-0.3
953
Tumor
-0.3
391
Tumor
-0.3
187
Tumor
-0.3
415
Tumor
-0.3
913
Tumor
-0.3
262
Normal
-0.3
477
Tumor
-0.3
785
Tumor
-0.3
355
Tumor
-0.3
124
Normal
-0.3
445
Tumor
-0.4
451
Tumor
-0.5
713
Tumor
-0.5
963
Tumor
-0.5
327
Tumor
-0.5
663
Tumor
-0.5
433
Tumor
-0.5
461
Tumor
-0.5
191
Tumor
-0.5
557
Tumor
-0.5
745
Tumor
-0.5
145
Tumor
-0.5
527
Tumor
-0.5
447
Tumor
-0.5
431
Tumor
-0.6
915
Tumor
-0.6
227
Tumor
-0.6
923
Tumor
-0.6
341
Tumor
-0.6
615
Tumor
-0.6
217
Tumor
-0.7
1045
Tumor
-0.7
524
Normal
-0.7
141
Tumor
-0.7
195
Tumor
-0.7
487
Tumor
-0.7
536
Normal
-0.7
814
Normal
-0.7
313
Tumor
-0.7
861
Tumor
-0.7
755
Tumor
-0.7
455
Tumor
-0.8
813
Tumor
-0.8
443
Tumor
-0.8
261
Tumor
-0.8
877
Tumor
-0.8
185
Tumor
-0.8
943
Tumor
-0.8
685
Tumor
-0.8
297
Tumor
-0.9
213
Tumor
-0.9
777
Tumor
-0.9
937
Tumor
-0.9
467
Tumor
-0.9
387
Tumor
-0.9
491
Tumor
-0.9
161
Tumor
-0.9
421
Tumor
-0.9
257
Tumor
-0.9
367
Tumor
-1.0
881
Tumor
-1.0
135
Tumor
-1.0
523
Tumor
-1.0
343
Tumor
-1.0
957
Tumor
-1.0
493
Tumor
-1.1
1015
Tumor
-1.1
311
Tumor
-1.1
567
Tumor
-1.1
112
Tumor
-1.1
221
Tumor
-1.1
231
Tumor
-1.1
917
Tumor
-1.1
975
Tumor
-1.1
413
Tumor
-1.1
537
Tumor
-1.1
1043
Tumor
-1.2
123
Tumor
-1.2
351
Tumor
-1.2
715
Tumor
-1.2
553
Tumor
-1.2
125
Tumor
-1.2
951
Tumor
-1.3
483
Tumor
-1.3
573
Tumor
-1.3
277
Tumor
-1.3
283
Tumor
-1.3
223
Tumor
-1.4
983
Tumor
-1.4
363
Tumor
-1.4
471
Tumor
-1.4
724
Normal
-1.4
395
Tumor
-1.4
383
Tumor
-1.4
427
Tumor
-1.4
967
Tumor
-1.4
525
Tumor
-1.4
1025
Tumor
-1.4
727
Tumor
-1.4
965
Tumor
-1.4
331
Tumor
-1.4
473
Tumor
-1.5
147
Tumor
-1.5
977
Tumor
-1.5
863
Tumor
-1.5
817
Tumor
-1.6
463
Tumor
-1.6
545
Tumor
-1.6
1021
Tumor
-1.6
697
Tumor
-1.7
271
Tumor
-1.7
635
Tumor
-1.7
375
Tumor
-1.7
921
Tumor
-1.7
665
Tumor
-1.7
737
Tumor
-1.8
517
Tumor
-1.8
171
Tumor
-1.8
285
Tumor
-1.8
1031
Tumor
-1.8
671
Tumor
-1.9
497
Tumor
-1.9
851
Tumor
-1.9
425
Tumor
-2.0
131
Tumor
-2.0
211
Tumor
-2.0
815
Tumor
-2.1
743
Tumor
-2.1
385
Tumor
-2.1
865
Tumor
-2.2
661
Tumor
-2.3
535
Tumor
-2.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
