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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGF2R is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
52.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
44.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
43.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
43.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
33.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
20.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
19.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IGF2R is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.2
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
70.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
59.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
58.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
54.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
52.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
50.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
47.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
47.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
46.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
45.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
45.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
43.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
42.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
42.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
41.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
41.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
39.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
37.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
37.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
35.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
34.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
34.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
31.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
30.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
28.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
24.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
23.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
1.3
743
Tumor
1.2
851
Tumor
1.2
957
Tumor
1.1
313
Tumor
1.1
351
Tumor
1.1
724
Normal
1.0
1013
Tumor
1.0
473
Tumor
1.0
953
Tumor
0.9
231
Tumor
0.9
125
Tumor
0.9
921
Tumor
0.9
367
Tumor
0.9
285
Tumor
0.9
815
Tumor
0.9
471
Tumor
0.8
491
Tumor
0.8
741
Tumor
0.8
965
Tumor
0.8
537
Tumor
0.8
487
Tumor
0.8
535
Tumor
0.8
497
Tumor
0.7
425
Tumor
0.7
527
Tumor
0.7
343
Tumor
0.7
567
Tumor
0.7
411
Tumor
0.7
911
Tumor
0.6
777
Tumor
0.6
223
Tumor
0.6
923
Tumor
0.6
813
Tumor
0.6
451
Tumor
0.5
685
Tumor
0.5
861
Tumor
0.5
533
Tumor
0.4
553
Tumor
0.4
1025
Tumor
0.4
943
Tumor
0.4
375
Tumor
0.4
817
Tumor
0.3
915
Tumor
0.3
1027
Tumor
0.3
647
Tumor
0.3
483
Tumor
0.3
925
Tumor
0.3
977
Tumor
0.3
147
Tumor
0.3
695
Tumor
0.3
383
Tumor
0.3
283
Tumor
0.3
663
Tumor
0.3
573
Tumor
0.3
131
Tumor
0.3
363
Tumor
0.2
211
Tumor
0.2
967
Tumor
0.2
877
Tumor
0.2
525
Tumor
0.2
867
Tumor
0.2
1031
Tumor
0.2
387
Tumor
0.2
715
Tumor
0.1
447
Tumor
0.1
963
Tumor
0.1
823
Tumor
0.1
545
Tumor
0.1
665
Tumor
0.1
385
Tumor
0.1
187
Tumor
0.1
331
Tumor
0.1
141
Tumor
0.1
785
Tumor
0.1
745
Tumor
0.1
983
Tumor
0.1
1021
Tumor
0.1
135
Tumor
0.1
1045
Tumor
0.1
257
Tumor
0.1
697
Tumor
0.1
124
Normal
0.1
271
Tumor
0.1
365
Tumor
0.0
391
Tumor
0.0
713
Tumor
0.0
361
Tumor
0.0
431
Tumor
0.0
661
Tumor
0.0
435
Tumor
0.0
227
Tumor
0.0
755
Tumor
0.0
1015
Tumor
0.0
221
Tumor
0.0
966
Normal
0.0
952
Normal
0.0
627
Tumor
-0.1
137
Tumor
-0.1
492
Normal
-0.1
434
Normal
-0.1
127
Tumor
-0.1
518
Normal
-0.1
554
Normal
-0.1
357
Tumor
-0.1
883
Tumor
-0.1
538
Normal
-0.1
951
Tumor
-0.1
267
Tumor
-0.1
873
Tumor
-0.1
415
Tumor
-0.1
493
Tumor
-0.1
474
Normal
-0.1
114
Normal
-0.1
427
Tumor
-0.1
914
Normal
-0.2
863
Tumor
-0.2
286
Normal
-0.2
738
Normal
-0.2
881
Tumor
-0.2
111
Normal
-0.2
536
Normal
-0.2
185
Tumor
-0.2
814
Normal
-0.2
445
Tumor
-0.2
448
Normal
-0.2
1041
Tumor
-0.2
874
Normal
-0.2
128
Normal
-0.2
546
Normal
-0.2
968
Normal
-0.2
413
Tumor
-0.2
142
Normal
-0.2
412
Normal
-0.2
1043
Tumor
-0.2
443
Tumor
-0.2
416
Normal
-0.2
956
Normal
-0.2
742
Normal
-0.2
113
Tumor
-0.2
228
Normal
-0.2
865
Tumor
-0.2
355
Tumor
-0.2
171
Tumor
-0.2
912
Normal
-0.2
344
Normal
-0.2
161
Tumor
-0.3
218
Normal
-0.3
778
Normal
-0.3
461
Tumor
-0.3
524
Normal
-0.3
955
Tumor
-0.3
1026
Normal
-0.3
136
Normal
-0.3
262
Normal
-0.3
916
Normal
-0.3
342
Normal
-0.3
217
Tumor
-0.3
917
Tumor
-0.3
488
Normal
-0.3
526
Normal
-0.3
395
Tumor
-0.3
494
Normal
-0.3
484
Normal
-0.3
126
Normal
-0.3
563
Tumor
-0.3
816
Normal
-0.3
477
Tumor
-0.3
517
Tumor
-0.3
358
Normal
-0.3
224
Normal
-0.3
212
Normal
-0.3
462
Normal
-0.3
261
Tumor
-0.3
272
Normal
-0.3
878
Normal
-0.3
746
Normal
-0.3
728
Normal
-0.3
112
Tumor
-0.3
924
Normal
-0.3
568
Normal
-0.3
534
Normal
-0.3
515
Tumor
-0.3
513
Tumor
-0.3
386
Normal
-0.3
858
Normal
-0.3
574
Normal
-0.3
982
Normal
-0.3
353
Tumor
-0.3
314
Normal
-0.3
311
Tumor
-0.3
297
Tumor
-0.3
186
Normal
-0.3
938
Normal
-0.3
528
Normal
-0.3
922
Normal
-0.3
1028
Normal
-0.3
744
Normal
-0.3
918
Normal
-0.3
222
Normal
-0.4
436
Normal
-0.4
686
Normal
-0.4
1016
Normal
-0.4
362
Normal
-0.4
472
Normal
-0.4
516
Normal
-0.4
364
Normal
-0.4
452
Normal
-0.4
864
Normal
-0.4
328
Normal
-0.4
232
Normal
-0.4
913
Tumor
-0.4
617
Tumor
-0.4
498
Normal
-0.4
1044
Normal
-0.4
944
Normal
-0.4
188
Normal
-0.4
298
Normal
-0.4
352
Normal
-0.4
396
Normal
-0.4
455
Tumor
-0.4
332
Normal
-0.4
423
Tumor
-0.4
426
Normal
-0.4
268
Normal
-0.4
1014
Normal
-0.4
564
Normal
-0.4
138
Normal
-0.4
662
Normal
-0.4
433
Tumor
-0.4
312
Normal
-0.4
954
Normal
-0.4
716
Normal
-0.4
696
Normal
-0.4
327
Tumor
-0.4
278
Normal
-0.4
824
Normal
-0.4
356
Normal
-0.4
882
Normal
-0.4
132
Normal
-0.4
868
Normal
-0.4
937
Tumor
-0.4
958
Normal
-0.4
698
Normal
-0.4
714
Normal
-0.4
866
Normal
-0.4
214
Normal
-0.5
422
Normal
-0.5
558
Normal
-0.5
258
Normal
-0.5
664
Normal
-0.5
648
Normal
-0.5
482
Normal
-0.5
284
Normal
-0.5
468
Normal
-0.5
376
Normal
-0.5
672
Normal
-0.5
852
Normal
-0.5
964
Normal
-0.5
394
Normal
-0.5
366
Normal
-0.5
428
Normal
-0.5
978
Normal
-0.5
984
Normal
-0.5
392
Normal
-0.5
857
Tumor
-0.5
414
Normal
-0.5
456
Normal
-0.5
926
Normal
-0.5
884
Normal
-0.5
146
Normal
-0.5
514
Normal
-0.5
572
Normal
-0.5
723
Tumor
-0.5
862
Normal
-0.5
1042
Normal
-0.5
722
Normal
-0.5
636
Normal
-0.5
976
Normal
-0.5
975
Tumor
-0.5
446
Normal
-0.5
1046
Normal
-0.5
421
Tumor
-0.5
464
Normal
-0.5
148
Normal
-0.5
172
Normal
-0.5
1022
Normal
-0.5
368
Normal
-0.5
388
Normal
-0.5
756
Normal
-0.5
196
Normal
-0.5
721
Tumor
-0.5
432
Normal
-0.5
666
Normal
-0.5
557
Tumor
-0.6
786
Normal
-0.6
213
Tumor
-0.6
478
Normal
-0.6
618
Normal
-0.6
466
Normal
-0.6
671
Tumor
-0.6
341
Tumor
-0.6
162
Normal
-0.6
192
Normal
-0.6
145
Tumor
-0.6
424
Normal
-0.6
615
Tumor
-0.6
1032
Normal
-0.6
384
Normal
-0.6
354
Normal
-0.6
523
Tumor
-0.6
444
Normal
-0.6
191
Tumor
-0.7
571
Tumor
-0.7
277
Tumor
-0.7
641
Tumor
-0.7
818
Normal
-0.7
981
Tumor
-0.7
463
Tumor
-0.7
727
Tumor
-0.7
467
Tumor
-0.7
642
Normal
-0.7
481
Tumor
-0.7
737
Tumor
-0.7
635
Tumor
-0.7
628
Normal
-0.8
195
Tumor
-0.8
465
Tumor
-0.8
616
Normal
-0.9
393
Tumor
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
