We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARRDC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
61.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
60.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
56.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
48.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
47.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
43.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
41.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
39.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
37.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
35.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
34.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
28.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
25.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
25.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
24.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
23.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
19.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
17.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARRDC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.3
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
117.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
79.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
64.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
59.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
59.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
55.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
54.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
54.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
52.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
51.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
48.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
46.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
44.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
43.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
40.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
39.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
38.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
38.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
38.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
36.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
33.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
32.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
28.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
27.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
14.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
13.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
513
Tumor
0.9
425
Tumor
0.6
616
Normal
0.5
627
Tumor
0.5
192
Normal
0.5
514
Normal
0.5
434
Normal
0.5
528
Normal
0.5
125
Tumor
0.4
738
Normal
0.4
534
Normal
0.4
433
Tumor
0.4
546
Normal
0.4
722
Normal
0.4
1022
Normal
0.4
444
Normal
0.4
471
Tumor
0.4
136
Normal
0.4
554
Normal
0.4
642
Normal
0.4
313
Tumor
0.4
526
Normal
0.4
497
Tumor
0.4
713
Tumor
0.4
413
Tumor
0.4
743
Tumor
0.4
636
Normal
0.4
224
Normal
0.4
332
Normal
0.4
258
Normal
0.3
1042
Normal
0.3
314
Normal
0.3
818
Normal
0.3
432
Normal
0.3
227
Tumor
0.3
664
Normal
0.3
228
Normal
0.3
628
Normal
0.3
696
Normal
0.3
464
Normal
0.3
343
Tumor
0.3
1032
Normal
0.3
217
Tumor
0.3
461
Tumor
0.3
298
Normal
0.3
394
Normal
0.3
488
Normal
0.3
421
Tumor
0.3
661
Tumor
0.3
881
Tumor
0.3
666
Normal
0.3
422
Normal
0.3
858
Normal
0.3
278
Normal
0.3
128
Normal
0.3
648
Normal
0.3
272
Normal
0.3
1041
Tumor
0.3
262
Normal
0.3
396
Normal
0.3
354
Normal
0.3
618
Normal
0.3
728
Normal
0.3
714
Normal
0.3
126
Normal
0.3
641
Tumor
0.3
388
Normal
0.3
494
Normal
0.3
132
Normal
0.2
456
Normal
0.2
358
Normal
0.2
911
Tumor
0.2
851
Tumor
0.2
744
Normal
0.2
474
Normal
0.2
824
Normal
0.2
686
Normal
0.2
484
Normal
0.2
716
Normal
0.2
662
Normal
0.2
312
Normal
0.2
352
Normal
0.2
446
Normal
0.2
424
Normal
0.2
877
Tumor
0.2
395
Tumor
0.2
232
Normal
0.2
817
Tumor
0.2
111
Normal
0.2
435
Tumor
0.2
723
Tumor
0.2
146
Normal
0.2
737
Tumor
0.2
862
Normal
0.2
492
Normal
0.2
913
Tumor
0.2
558
Normal
0.2
423
Tumor
0.2
777
Tumor
0.2
721
Tumor
0.2
162
Normal
0.2
385
Tumor
0.2
268
Normal
0.2
671
Tumor
0.2
285
Tumor
0.2
883
Tumor
0.2
135
Tumor
0.2
816
Normal
0.2
914
Normal
0.2
145
Tumor
0.2
414
Normal
0.2
742
Normal
0.2
462
Normal
0.2
195
Tumor
0.2
1016
Normal
0.2
286
Normal
0.2
852
Normal
0.2
172
Normal
0.2
212
Normal
0.2
392
Normal
0.2
884
Normal
0.1
196
Normal
0.1
311
Tumor
0.1
452
Normal
0.1
284
Normal
0.1
756
Normal
0.1
533
Tumor
0.1
882
Normal
0.1
148
Normal
0.1
277
Tumor
0.1
221
Tumor
0.1
188
Normal
0.1
191
Tumor
0.1
786
Normal
0.1
127
Tumor
0.1
257
Tumor
0.1
466
Normal
0.1
375
Tumor
0.1
741
Tumor
0.1
1021
Tumor
0.1
367
Tumor
0.1
468
Normal
0.1
516
Normal
0.1
328
Normal
0.1
746
Normal
0.1
518
Normal
0.1
493
Tumor
0.1
917
Tumor
0.1
114
Normal
0.1
386
Normal
0.1
695
Tumor
0.1
271
Tumor
0.1
573
Tumor
0.1
498
Normal
0.1
365
Tumor
0.1
218
Normal
0.1
112
Tumor
0.1
436
Normal
0.1
222
Normal
0.1
186
Normal
0.1
724
Normal
0.1
428
Normal
0.1
142
Normal
0.1
138
Normal
0.1
344
Normal
0.1
755
Tumor
0.1
874
Normal
0.1
863
Tumor
0.1
478
Normal
0.1
524
Normal
0.1
924
Normal
0.1
341
Tumor
0.1
1026
Normal
0.1
785
Tumor
0.1
356
Normal
0.1
572
Normal
0.1
416
Normal
0.1
857
Tumor
0.1
364
Normal
0.1
778
Normal
0.1
187
Tumor
0.1
864
Normal
0.1
878
Normal
0.0
538
Normal
0.0
283
Tumor
0.0
823
Tumor
0.0
568
Normal
0.0
213
Tumor
0.0
214
Normal
0.0
366
Normal
0.0
944
Normal
0.0
867
Tumor
0.0
922
Normal
0.0
391
Tumor
0.0
342
Normal
0.0
926
Normal
0.0
617
Tumor
0.0
477
Tumor
0.0
954
Normal
0.0
574
Normal
0.0
427
Tumor
0.0
672
Normal
0.0
745
Tumor
0.0
353
Tumor
0.0
376
Normal
0.0
967
Tumor
0.0
1028
Normal
0.0
412
Normal
0.0
557
Tumor
0.0
912
Normal
0.0
481
Tumor
0.0
814
Normal
0.0
393
Tumor
0.0
938
Normal
-0.1
916
Normal
-0.1
491
Tumor
-0.1
261
Tumor
-0.1
982
Normal
-0.1
124
Normal
-0.1
727
Tumor
-0.1
297
Tumor
-0.1
223
Tumor
-0.1
665
Tumor
-0.1
813
Tumor
-0.1
171
Tumor
-0.1
976
Normal
-0.1
451
Tumor
-0.1
482
Normal
-0.1
915
Tumor
-0.1
147
Tumor
-0.1
975
Tumor
-0.1
918
Normal
-0.1
426
Normal
-0.1
553
Tumor
-0.1
384
Normal
-0.1
564
Normal
-0.1
663
Tumor
-0.1
861
Tumor
-0.1
415
Tumor
-0.1
1031
Tumor
-0.1
472
Normal
-0.1
523
Tumor
-0.1
231
Tumor
-0.1
467
Tumor
-0.1
952
Normal
-0.1
267
Tumor
-0.2
383
Tumor
-0.2
361
Tumor
-0.2
563
Tumor
-0.2
113
Tumor
-0.2
483
Tumor
-0.2
351
Tumor
-0.2
327
Tumor
-0.2
368
Normal
-0.2
868
Normal
-0.2
866
Normal
-0.2
362
Normal
-0.2
567
Tumor
-0.2
956
Normal
-0.2
571
Tumor
-0.2
448
Normal
-0.2
937
Tumor
-0.2
984
Normal
-0.2
185
Tumor
-0.2
635
Tumor
-0.2
515
Tumor
-0.2
968
Normal
-0.2
955
Tumor
-0.2
387
Tumor
-0.2
357
Tumor
-0.2
964
Normal
-0.2
815
Tumor
-0.2
1025
Tumor
-0.2
921
Tumor
-0.2
445
Tumor
-0.2
473
Tumor
-0.3
953
Tumor
-0.3
141
Tumor
-0.3
647
Tumor
-0.3
161
Tumor
-0.3
615
Tumor
-0.3
873
Tumor
-0.3
411
Tumor
-0.3
923
Tumor
-0.3
487
Tumor
-0.3
431
Tumor
-0.3
698
Normal
-0.3
925
Tumor
-0.3
331
Tumor
-0.3
978
Normal
-0.3
958
Normal
-0.3
517
Tumor
-0.3
525
Tumor
-0.3
1014
Normal
-0.3
465
Tumor
-0.3
455
Tumor
-0.3
211
Tumor
-0.3
1046
Normal
-0.4
943
Tumor
-0.4
966
Normal
-0.4
963
Tumor
-0.4
685
Tumor
-0.4
865
Tumor
-0.4
355
Tumor
-0.4
1027
Tumor
-0.4
447
Tumor
-0.4
715
Tumor
-0.4
137
Tumor
-0.4
981
Tumor
-0.4
463
Tumor
-0.4
363
Tumor
-0.4
545
Tumor
-0.4
1043
Tumor
-0.4
1044
Normal
-0.4
123
Tumor
-0.4
536
Normal
-0.4
1015
Tumor
-0.5
983
Tumor
-0.5
951
Tumor
-0.5
443
Tumor
-0.5
977
Tumor
-0.5
965
Tumor
-0.5
957
Tumor
-0.5
527
Tumor
-0.5
1045
Tumor
-0.5
131
Tumor
-0.5
537
Tumor
-0.6
697
Tumor
-0.6
1013
Tumor
-0.7
535
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
