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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
230.2
nTPM
FANTOM5:
475.8
Scaled Tags Per Million
Pig:
123.3
nTPM
Allen mouse:
6.7
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
230.2
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 99.7
1984
Male, age 76, both hemispheres
128.6
2301
Female, age 85, both hemispheres
97.3
2188
Female, age 91, both hemispheres
94.1
2090
Male, age 80, both hemispheres
79.0
Dorsal cochlear nucleus nTPM: 91.7
2058
Male, age 76, both hemispheres
101.8
2370
Male, age 61, both hemispheres
98.7
2187
Female, age 91, both hemispheres
92.7
2802
Male, age 74, right hemisphere
87.7
2378
Male, age 80, both hemispheres
77.7
Dorsal tegmental nucleus nTPM: 97.0
2083
Male, age 80, both hemispheres
113.8
2358
Male, age 61, both hemispheres
101.4
1936
Male, age 76, left hemisphere
94.1
2326
Male, age 74, both hemispheres
78.9
Dorsolateral tegmental area nTPM: 95.8
2654
Male, age 80, both hemispheres
117.9
2751
Female, age 85, both hemispheres
109.5
2360
Male, age 74, both hemispheres
97.6
2141
Male, age 76, both hemispheres
85.5
2337
Male, age 61, both hemispheres
68.7
Kolliker-Fuse nucleus nTPM: 137.7
2163
Male, age 80, both hemispheres
200.3
2793
Female, age 91, left hemisphere
112.4
2315
Male, age 76, right hemisphere
100.5
Lateral lemniscal nuclei nTPM: 190.9
2169
Male, age 76, both hemispheres
260.1
2746
Female, age 85, left hemisphere
220.8
2036
Male, age 80, both hemispheres
206.7
2453
Male, age 74, right hemisphere
163.0
2320
Female, age 91, left hemisphere
103.9
Lateral parabrachial nucleus nTPM: 145.8
2139
Female, age 85, right hemisphere
265.6
2013
Male, age 80, both hemispheres
136.2
2790
Male, age 61, both hemispheres
119.1
2792
Male, age 76, both hemispheres
62.2
Lateral vestibular nucleus nTPM: 142.3
2184
Male, age 76, both hemispheres
190.2
2311
Male, age 80, both hemispheres
94.5
Locus coeruleus nTPM: 196.9
2123
Female, age 91, both hemispheres
252.6
2720
Male, age 74, both hemispheres
223.0
2014
Male, age 55, unknown
222.6
1980
Male, age 76, both hemispheres
191.3
2788
Male, age 74, unknown
181.4
2317
Female, age 72, unknown
175.4
2162
Male, age 80, both hemispheres
132.2
Medial parabrachial nucleus nTPM: 116.2
2854
Male, age 80, both hemispheres
139.7
2156
Male, age 61, both hemispheres
135.5
2170
Female, age 91, both hemispheres
107.9
2786
Male, age 76, both hemispheres
99.9
2463
Female, age 85, right hemisphere
98.1
Medial periolivary nuclei nTPM: 186.4
2171
Female, age 85, both hemispheres
318.7
2063
Male, age 76, both hemispheres
272.7
2791
Male, age 74, right hemisphere
137.5
2081
Male, age 80, both hemispheres
107.0
2458
Female, age 91, both hemispheres
96.3
Motor facial nucleus nTPM: 174.7
2062
Male, age 76, both hemispheres
287.4
2697
Female, age 85, both hemispheres
178.6
2365
Male, age 74, right hemisphere
170.6
2327
Male, age 80, both hemispheres
167.7
2795
Female, age 91, both hemispheres
130.0
2126
Male, age 61, both hemispheres
114.1
Motor trigeminal nucleus nTPM: 124.7
2079
Male, age 80, both hemispheres
188.9
2560
Male, age 74, both hemispheres
131.6
2335
Male, age 61, both hemispheres
110.8
2309
Male, age 76, both hemispheres
105.0
2321
Female, age 91, both hemispheres
87.3
Nuclei of the trapezoid body nTPM: 230.2
2159
Male, age 61, both hemispheres
316.3
2735
Female, age 85, both hemispheres
308.1
1983
Male, age 76, both hemispheres
252.5
2166
Male, age 80, both hemispheres
156.8
2368
Female, age 91, both hemispheres
117.6
Nucleus raphe magnus nTPM: 226.2
2160
Male, age 61, both hemispheres
339.6
2172
Female, age 85, both hemispheres
328.5
2455
Male, age 74, both hemispheres
220.3
2051
Male, age 76, both hemispheres
184.7
2328
Male, age 80, both hemispheres
166.9
2459
Female, age 91, both hemispheres
117.4
Paramedian reticular nucleus nTPM: 168.2
2050
Female, age 85, both hemispheres
242.7
2057
Male, age 80, both hemispheres
173.9
2313
Male, age 61, both hemispheres
159.1
2052
Male, age 76, both hemispheres
96.9
Pedunculopontine tegmental nucleus nTPM: 108.8
2334
Male, age 80, both hemispheres
112.6
2338
Male, age 61, both hemispheres
107.7
1921
Female, age 85, both hemispheres
106.0
Pontine nuclei nTPM: 224.6
2787
Female, age 85, both hemispheres
379.5
1863
Male, age 55, unknown
296.4
2727
Male, age 61, right hemisphere
294.4
2109
Female, age 72, unknown
231.5
1968
Male, age 76, left hemisphere
228.9
2115
Male, age 80, left hemisphere
132.4
2454
Male, age 74, left hemisphere
131.0
2319
Female, age 91, both hemispheres
102.8
Pontine raphe nucleus nTPM: 178.6
2122
Female, age 85, midline
250.0
2853
Male, age 76, midline
107.1
Posteroventral cochlear nucleus nTPM: 99.6
2752
Female, age 85, both hemispheres
158.9
2070
Male, age 76, both hemispheres
128.4
2371
Male, age 61, both hemispheres
89.2
2341
Male, age 80, both hemispheres
72.0
2135
Female, age 91, both hemispheres
49.8
Principal sensory trigeminal nucleus nTPM: 195.4
2158
Male, age 61, both hemispheres
306.1
2008
Male, age 80, left hemisphere
213.5
2324
Male, age 76, both hemispheres
156.6
2367
Female, age 91, left hemisphere
105.3
Reticular pontine nucleus, caudal nTPM: 144.6
2332
Male, age 80, right hemisphere
203.6
2092
Male, age 76, both hemispheres
189.2
2457
Female, age 91, both hemispheres
104.6
2559
Male, age 74, both hemispheres
80.9
Reticular pontine nucleus, oral nTPM: 137.8
2012
Female, age 85, both hemispheres
214.4
2361
Male, age 74, both hemispheres
166.0
1939
Male, age 80, both hemispheres
114.8
2167
Male, age 76, both hemispheres
99.5
2366
Female, age 91, both hemispheres
94.4
Reticulotegmental nucleus nTPM: 129.2
2325
Male, age 76, both hemispheres
175.3
2452
Male, age 74, both hemispheres
124.6
2333
Male, age 80, both hemispheres
113.0
2322
Female, age 91, both hemispheres
104.1
Spinal trigeminal nucleus, oral nTPM: 146.6
2737
Female, age 85, both hemispheres
171.2
2164
Male, age 80, both hemispheres
171.1
1978
Male, age 76, both hemispheres
97.5
Subcoeruleus area nTPM: 127.5
2089
Male, age 76, left hemisphere
174.4
1958
Male, age 80, both hemispheres
155.4
2323
Female, age 91, left hemisphere
127.3
2451
Male, age 74, both hemispheres
100.7
2369
Female, age 85, left hemisphere
79.5
Superior olive nTPM: 181.3
1875
Female, age 85, both hemispheres
297.3
2020
Male, age 76, both hemispheres
177.7
2364
Male, age 74, right hemisphere
159.1
2329
Male, age 80, right hemisphere
145.4
2561
Female, age 91, both hemispheres
126.9
Ventral periolivary nuclei nTPM: 203.6
2130
Female, age 85, both hemispheres
286.6
2165
Male, age 80, both hemispheres
222.5
2023
Male, age 76, both hemispheres
159.8
2794
Female, age 91, left hemisphere
145.4
Ventrolateral tegmental area, A5 NE cell group nTPM: 147.6
1959
Male, age 76, both hemispheres
182.8
2449
Male, age 74, both hemispheres
182.7
2840
Female, age 85, both hemispheres
180.3
2161
Male, age 80, both hemispheres
148.0
2359
Male, age 61, both hemispheres
104.4
2456
Female, age 91, both hemispheres
87.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
123.3
Pig sample
Sample description
nTPM
Pons nTPM: 123.3
Samples: 4
Max nTPM: 178.4
Min nTPM: 60.1
Sample A
Female
178.4
Sample B
Female
60.1
Sample C
Male
89.8
Sample D
Male
164.7
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
