MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:99.7 nTPM
HPA Brain:155.7 nTPM
GTEx:99.7 nTPM
FANTOM5:46.2 Scaled Tags Per Million
Pig:142.1 nTPM
Mouse:77.4 nTPM
Allen mouse:5.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 155.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 105.5
2019 Male, age 18, unknown 155.6
2666 Male, age 74, left hemisphere 128.1
1827 Male, age 72, unknown 122.8
2219 Male, age 76, both hemispheres 118.1
2411 Female, age 72, unknown 106.0
2828 Female, age 72, unknown 105.7
2586 Male, age 75, left hemisphere 100.4
1870 Female, age 42, unknown 80.2
1833 Male, age 53, unknown 69.4
1830 Male, age 51, unknown 68.1
Dorsal raphe nucleus
nTPM: 114.7
2298 Female, age 72, unknown 154.0
2047 Male, age 72, unknown 127.4
1828 Male, age 53, unknown 124.2
2750 Male, age 76, both hemispheres 106.5
2016 Female, age 72, unknown 61.6
Inferior colliculus
nTPM: 88.9
2097 Female, age 72, unknown 108.1
1890 Male, age 53, unknown 102.7
1848 Female, age 42, unknown 83.3
2849 Male, age 72, unknown 61.4
Median raphe nucleus
nTPM: 125.2
2220 Male, age 76, midline 125.2
Periaquaductal grey, anterior
nTPM: 114.1
1795 Male, age 51, unknown 137.9
1947 Male, age 18, unknown 116.8
2502 Female, age 75, unknown 87.6
Periaquaductal grey, dorsal
nTPM: 77.4
1831 Male, age 72, unknown 89.6
2850 Male, age 76, both hemispheres 76.8
2464 Female, age 72, unknown 75.0
1840 Male, age 53, unknown 68.3
Periaquaductal grey, lateral
nTPM: 80.4
2272 Male, age 74, both hemispheres 103.9
2053 Male, age 18, unknown 71.9
2140 Male, age 76, both hemispheres 65.5
Pretectal area
nTPM: 145.7
1816 Male, age 51, unknown 230.6
2007 Male, age 72, unknown 224.2
1817 Female, age 42, unknown 211.2
1944 Female, age 72, unknown 209.2
1815 Male, age 53, unknown 162.6
2667 Female, age 75, unknown 144.4
2273 Male, age 74, both hemispheres 114.4
2224 Female, age 72, unknown 96.0
2407 Male, age 75, both hemispheres 82.2
2825 Male, age 18, unknown 70.6
2316 Male, age 76, right hemisphere 56.6
Red nucleus
nTPM: 96.2
2785 Male, age 18, unknown 141.5
1821 Female, age 72, unknown 116.2
2725 Female, age 75, unknown 108.4
2588 Male, age 74, left hemisphere 97.0
1954 Female, age 42, unknown 96.2
2584 Male, age 75, left hemisphere 95.7
1865 Male, age 51, unknown 95.6
1904 Male, age 53, unknown 85.8
2823 Male, age 76, right hemisphere 81.2
2769 Male, age 72, unknown 80.6
2227 Male, age 72, unknown 78.6
2503 Female, age 72, unknown 77.8
Substantia nigra
nTPM: 155.7
1916 Female, age 42, unknown 230.7
1941 Male, age 53, unknown 209.6
1889 Female, age 72, unknown 185.4
1851 Male, age 51, unknown 184.2
2665 Male, age 74, both hemispheres 158.6
2409 Female, age 72, unknown 151.6
2241 Male, age 72, unknown 139.2
2699 Male, age 18, unknown 103.1
2590 Female, age 75, unknown 102.1
2583 Male, age 75, right hemisphere 92.3
Superior colliculus
nTPM: 107.8
2087 Female, age 72, unknown 169.1
2668 Female, age 75, unknown 153.4
2261 Male, age 18, unknown 128.3
1796 Male, age 53, unknown 117.1
1895 Male, age 76, right hemisphere 94.7
2664 Male, age 75, both hemispheres 92.8
1913 Female, age 42, unknown 89.0
2587 Male, age 74, left hemisphere 85.9
1995 Male, age 72, unknown 79.7
1839 Male, age 51, unknown 67.6
Ventral tegmental area
nTPM: 128.1
2218 Male, age 76, both hemispheres 171.1
2410 Female, age 72, unknown 169.3
1915 Female, age 42, unknown 158.2
1942 Male, age 51, unknown 103.4
2021 Male, age 53, unknown 84.5
2223 Female, age 72, unknown 82.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 99.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.7
Samples: 183

Max nTPM: 546.8
Min nTPM: 13.7
Std nTPM: 73.5
Median nTPM: 79.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 546.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 409.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 332.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 314.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 286.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 279.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 272.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 271.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 253.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 227.3
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 213.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 46.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.2
FF:10158-103A5 76 years, female 46.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 142.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 81.7
Samples: 4

Max nTPM: 130.2
Min nTPM: 44.2
Sample A Female 130.2
Sample B Female 66.5
Sample C Male 86.0
Sample D Male 44.2
Midbrain
nTPM: 92.4
Samples: 4

Max nTPM: 175.1
Min nTPM: 53.4
Sample A Female 59.9
Sample B Female 53.4
Sample C Male 175.1
Sample D Male 81.1
Periaqueductal gray
nTPM: 47.8
Samples: 3

Max nTPM: 61.9
Min nTPM: 38.8
Sample B Female 42.7
Sample C Male 61.9
Sample D Male 38.8
Superior colliculi
nTPM: 142.2
Samples: 4

Max nTPM: 237.3
Min nTPM: 95.2
Sample A Female 131.4
Sample B Female 104.7
Sample C Male 237.3
Sample D Male 95.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 77.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.4
Samples: 4

Max nTPM: 78.5
Min nTPM: 76.8
Sample A Male 77.4
Sample B Male 76.8
Sample C Female 78.5
Sample D Female 77.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
69526671 Antisense, RP_050421_01_D04, Mouse strain C57BL/6J (56 days, male) 7.1
77332100 Antisense, RP_070116_02_B01, Mouse strain C57BL/6J (56 days, male) 2.9

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