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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
METTL9 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
54.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
52.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
48.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
48.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
43.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
43.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
43.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
40.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
36.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
31.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
28.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
26.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
23.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
20.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
19.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
18.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
METTL9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
42.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
37.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
31.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
31.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
30.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
27.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
571
Tumor
1.7
491
Tumor
1.4
983
Tumor
1.2
724
Normal
1.1
917
Tumor
1.1
351
Tumor
1.0
695
Tumor
1.0
671
Tumor
1.0
516
Normal
0.9
573
Tumor
0.8
387
Tumor
0.8
1013
Tumor
0.8
497
Tumor
0.7
283
Tumor
0.7
943
Tumor
0.7
311
Tumor
0.7
923
Tumor
0.7
361
Tumor
0.7
367
Tumor
0.7
977
Tumor
0.7
411
Tumor
0.6
473
Tumor
0.6
364
Normal
0.6
415
Tumor
0.6
1043
Tumor
0.6
328
Normal
0.6
1027
Tumor
0.6
285
Tumor
0.6
957
Tumor
0.6
363
Tumor
0.6
513
Tumor
0.6
526
Normal
0.5
385
Tumor
0.5
355
Tumor
0.5
713
Tumor
0.5
963
Tumor
0.5
463
Tumor
0.5
721
Tumor
0.5
297
Tumor
0.5
211
Tumor
0.5
545
Tumor
0.5
514
Normal
0.5
1021
Tumor
0.5
395
Tumor
0.5
1031
Tumor
0.5
524
Normal
0.5
716
Normal
0.5
227
Tumor
0.5
953
Tumor
0.5
533
Tumor
0.4
391
Tumor
0.4
911
Tumor
0.4
814
Normal
0.4
743
Tumor
0.4
813
Tumor
0.4
478
Normal
0.4
817
Tumor
0.4
435
Tumor
0.4
471
Tumor
0.4
925
Tumor
0.4
722
Normal
0.4
518
Normal
0.3
498
Normal
0.3
1015
Tumor
0.3
492
Normal
0.3
232
Normal
0.3
327
Tumor
0.3
916
Normal
0.3
455
Tumor
0.3
443
Tumor
0.3
416
Normal
0.3
815
Tumor
0.3
913
Tumor
0.3
955
Tumor
0.3
714
Normal
0.3
696
Normal
0.3
697
Tumor
0.3
343
Tumor
0.3
857
Tumor
0.3
461
Tumor
0.3
738
Normal
0.3
723
Tumor
0.3
284
Normal
0.3
451
Tumor
0.3
661
Tumor
0.3
384
Normal
0.2
956
Normal
0.2
493
Tumor
0.2
212
Normal
0.2
477
Tumor
0.2
356
Normal
0.2
258
Normal
0.2
494
Normal
0.2
386
Normal
0.2
818
Normal
0.2
224
Normal
0.2
672
Normal
0.2
728
Normal
0.2
648
Normal
0.2
686
Normal
0.2
515
Tumor
0.2
433
Tumor
0.2
715
Tumor
0.2
915
Tumor
0.2
488
Normal
0.2
914
Normal
0.2
268
Normal
0.2
742
Normal
0.2
662
Normal
0.2
487
Tumor
0.2
1045
Tumor
0.2
666
Normal
0.2
568
Normal
0.1
474
Normal
0.1
967
Tumor
0.1
341
Tumor
0.1
192
Normal
0.1
937
Tumor
0.1
467
Tumor
0.1
877
Tumor
0.1
445
Tumor
0.1
1028
Normal
0.1
313
Tumor
0.1
394
Normal
0.1
228
Normal
0.1
852
Normal
0.1
481
Tumor
0.1
1025
Tumor
0.1
647
Tumor
0.1
1042
Normal
0.1
132
Normal
0.1
517
Tumor
0.1
563
Tumor
0.1
434
Normal
0.1
1026
Normal
0.1
744
Normal
0.1
365
Tumor
0.1
465
Tumor
0.1
392
Normal
0.1
918
Normal
0.1
567
Tumor
0.1
553
Tumor
0.1
663
Tumor
0.1
412
Normal
0.1
444
Normal
0.1
546
Normal
0.1
383
Tumor
0.0
981
Tumor
0.0
851
Tumor
0.0
452
Normal
0.0
554
Normal
0.0
286
Normal
0.0
921
Tumor
0.0
332
Normal
0.0
272
Normal
0.0
954
Normal
0.0
213
Tumor
0.0
665
Tumor
0.0
574
Normal
0.0
924
Normal
0.0
483
Tumor
0.0
484
Normal
0.0
396
Normal
0.0
148
Normal
0.0
388
Normal
0.0
746
Normal
0.0
685
Tumor
0.0
958
Normal
0.0
538
Normal
0.0
572
Normal
0.0
976
Normal
0.0
664
Normal
0.0
312
Normal
0.0
952
Normal
0.0
472
Normal
0.0
528
Normal
0.0
393
Tumor
0.0
816
Normal
0.0
218
Normal
0.0
314
Normal
0.0
741
Tumor
0.0
564
Normal
0.0
482
Normal
-0.1
557
Tumor
-0.1
462
Normal
-0.1
944
Normal
-0.1
883
Tumor
-0.1
534
Normal
-0.1
1032
Normal
-0.1
277
Tumor
-0.1
447
Tumor
-0.1
331
Tumor
-0.1
222
Normal
-0.1
214
Normal
-0.1
858
Normal
-0.1
1022
Normal
-0.1
223
Tumor
-0.1
537
Tumor
-0.1
1041
Tumor
-0.1
262
Normal
-0.1
376
Normal
-0.1
926
Normal
-0.1
982
Normal
-0.1
368
Normal
-0.1
358
Normal
-0.1
951
Tumor
-0.1
968
Normal
-0.1
824
Normal
-0.1
456
Normal
-0.1
922
Normal
-0.1
446
Normal
-0.1
881
Tumor
-0.1
1016
Normal
-0.1
975
Tumor
-0.2
965
Tumor
-0.2
525
Tumor
-0.2
221
Tumor
-0.2
756
Normal
-0.2
195
Tumor
-0.2
464
Normal
-0.2
161
Tumor
-0.2
878
Normal
-0.2
938
Normal
-0.2
698
Normal
-0.2
468
Normal
-0.2
217
Tumor
-0.2
882
Normal
-0.2
278
Normal
-0.2
558
Normal
-0.2
186
Normal
-0.2
527
Tumor
-0.2
357
Tumor
-0.2
196
Normal
-0.2
535
Tumor
-0.2
785
Tumor
-0.2
188
Normal
-0.2
466
Normal
-0.2
354
Normal
-0.2
375
Tumor
-0.2
353
Tumor
-0.2
777
Tumor
-0.2
737
Tumor
-0.2
366
Normal
-0.2
352
Normal
-0.2
147
Tumor
-0.2
523
Tumor
-0.2
362
Normal
-0.2
172
Normal
-0.3
431
Tumor
-0.3
884
Normal
-0.3
191
Tumor
-0.3
727
Tumor
-0.3
448
Normal
-0.3
745
Tumor
-0.3
823
Tumor
-0.3
432
Normal
-0.3
984
Normal
-0.3
436
Normal
-0.3
755
Tumor
-0.3
912
Normal
-0.3
298
Normal
-0.3
267
Tumor
-0.3
185
Tumor
-0.3
964
Normal
-0.3
778
Normal
-0.4
1014
Normal
-0.4
1044
Normal
-0.4
162
Normal
-0.4
786
Normal
-0.4
271
Tumor
-0.4
187
Tumor
-0.4
231
Tumor
-0.4
978
Normal
-0.5
342
Normal
-0.5
261
Tumor
-0.5
966
Normal
-0.5
536
Normal
-0.6
171
Tumor
-0.6
257
Tumor
-0.6
344
Normal
-0.8
135
Tumor
-1.2
1046
Normal
-1.5
131
Tumor
-1.7
138
Normal
-1.7
145
Tumor
-1.8
137
Tumor
-1.9
142
Normal
-2.0
141
Tumor
-2.2
146
Normal
-2.2
136
Normal
-2.3
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
864
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
