BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:37.1 nTPM
HPA Brain:70.9 nTPM
GTEx:37.1 nTPM
FANTOM5:10.6 Scaled Tags Per Million
Pig:108.1 nTPM
Mouse:133.2 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Brain excitatory neuronsBrain inhibitory neuronsOther brain neuronsAstrocytesBergmann gliaOligodendrocyte progenitor cellsOligodendrocytesMicrogliaEpendymal cellsChoroid plexus epithelial cellsVascular endothelial cellsPericytesVascular smooth muscle cellsFibroblastsMonocytesMacrophagesT-cellsB-cellsNK-cells050100150200250nCPM

CAUDATE - Antibody stainingi
Antibody HPA034489Antibody HPA034490
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 70.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 64.7
2846 Female, age 79, unknown 72.2
1781 Male, age 74, unknown 71.5
2290 Female, age 72, unknown 67.5
1854 Male, age 80, left hemisphere 65.6
1857 Female, age 85, left hemisphere 64.1
2481 Female, age 94, left hemisphere 62.8
2288 Male, age 75, left hemisphere 59.4
2289 Male, age 61, right hemisphere 54.8
Globus pallidus, externus
nTPM: 60.2
2772 Female, age 79, unknown 75.6
2567 Female, age 72, unknown 61.7
2395 Male, age 75, both hemispheres 58.9
2646 Male, age 61, right hemisphere 54.2
1996 Male, age 80, right hemisphere 50.8
Globus pallidus, internus
nTPM: 55.9
2483 Female, age 94, right hemisphere 69.3
1818 Male, age 74, unknown 62.8
2287 Male, age 75, right hemisphere 59.2
2037 Male, age 80, right hemisphere 52.5
2566 Female, age 72, unknown 51.9
2111 Female, age 85, right hemisphere 48.9
2778 Female, age 91, both hemispheres 46.6
Nucleus accumbens
nTPM: 57.2
1783 Male, age 74, unknown 69.7
1856 Female, age 91, right hemisphere 65.7
1806 Female, age 85, left hemisphere 57.6
2824 Male, age 61, right hemisphere 57.4
2286 Male, age 75, left hemisphere 56.3
2698 Female, age 72, unknown 52.6
2391 Female, age 94, left hemisphere 52.5
2732 Male, age 80, right hemisphere 45.6
Nucleus basalis of Meynert
nTPM: 62.3
2393 Male, age 80, right hemisphere 65.5
2484 Female, age 94, left hemisphere 65.4
2821 Male, age 75, both hemispheres 59.9
2569 Male, age 61, both hemispheres 58.5
Nucleus of the diagonal band
nTPM: 63.3
2029 Male, age 61, right hemisphere 72.5
2775 Male, age 80, right hemisphere 71.8
1812 Female, age 91, both hemispheres 68.7
2195 Female, age 85, both hemispheres 57.3
1979 Male, age 74, unknown 46.3
Putamen
nTPM: 70.9
2647 Male, age 75, left hemisphere 76.2
1829 Male, age 74, unknown 75.2
2466 Female, age 79, unknown 73.0
2489 Female, age 72, unknown 71.1
1838 Male, age 80, right hemisphere 67.3
2482 Female, age 94, left hemisphere 67.1
1937 Female, age 91, right hemisphere 66.1
Septal nuclei
nTPM: 57.7
2031 Female, age 72, unknown 68.2
1960 Male, age 74, unknown 60.4
2009 Female, age 91, both hemispheres 59.2
2629 Female, age 94, right hemisphere 59.0
2394 Male, age 61, left hemisphere 55.7
2059 Female, age 85, both hemispheres 52.6
2199 Male, age 80, right hemisphere 48.7
Stria terminalis, bed nucleus
nTPM: 64.3
1974 Female, age 91, both hemispheres 73.4
2486 Female, age 94, both hemispheres 65.5
2201 Male, age 74, unknown 54.0

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 37.1
GTEx sample id Sample description nTPM
29.433.338.919.452.3051015202530354045505560
Brain - Caudate (basal ganglia)
Average nTPM: 34.7
Samples: 300

Max nTPM: 62.4
Min nTPM: 19.4
Std nTPM: 8.0
Median nTPM: 33.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 62.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 59.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 57.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 57.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 56.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 55.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 55.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 54.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 53.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 52.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 51.3
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27.933.139.319.156.20510152025303540455055
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 34.1
Samples: 285

Max nTPM: 57.8
Min nTPM: 19.1
Std nTPM: 7.9
Median nTPM: 33.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 57.8
GTEX-12126-0011-R6b-SM-GIN99 20-29 years, male 56.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 56.1
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 53.8
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 53.6
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 53.5
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 53.4
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 53.1
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 52.9
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 50.6
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 50.6
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31.535.440.121.652.6010203040506070
Brain - Putamen (basal ganglia)
Average nTPM: 37.1
Samples: 254

Max nTPM: 73.8
Min nTPM: 21.6
Std nTPM: 7.9
Median nTPM: 35.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 73.8
GTEX-12126-0011-R7a-SM-GJ3Q2 20-29 years, male 67.4
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 58.9
GTEX-1PPGY-0011-R7b-SM-F33YV 60-69 years, male 58.4
GTEX-X4EP-0011-R7B-SM-4PQZW 60-69 years, female 56.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 56.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 55.5
GTEX-QVJO-0011-R7A-SM-G8W5W 60-69 years, female 54.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 54.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 53.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 52.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 10.2
FF:10164-103B2 76 years, female 10.2
Nucleus accumbens
Scaled Tags Per Million: 6.8
FF:10037-101F1 23-56 years, mixed 6.8
Putamen
Scaled Tags Per Million: 10.6
FF:10176-103C5 60 years, female 10.6
Globus pallidus
Scaled Tags Per Million: 9.2
FF:10161-103A8 76 years, female 9.8
FF:10175-103C4 60 years, female 8.6

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 108.1
Pig sample Sample description nTPM
80.085.590.873.796.00102030405060708090
 		Caudate
nTPM: 85.2
Samples: 4

Max nTPM: 96.0
Min nTPM: 73.7
Sample A Female 73.7
Sample B Female 89.0
Sample C Male 96.0
Sample D Male 82.1
100.5105.3112.997.4124.30102030405060708090100110120
 		Putamen
nTPM: 108.1
Samples: 4

Max nTPM: 124.3
Min nTPM: 97.4
Sample A Female 101.6
Sample B Female 97.4
Sample C Male 124.3
Sample D Male 109.1
79.982.383.681.986.501020304050607080
 		Septum
nTPM: 81.2
Samples: 4

Max nTPM: 86.5
Min nTPM: 73.9
Sample A Female 82.6
Sample B Female 73.9
Sample C Male 86.5
Sample D Male 81.9
84.689.895.874.3107.90102030405060708090100
 		Ventral pallidum
nTPM: 90.5
Samples: 4

Max nTPM: 107.9
Min nTPM: 74.3
Sample A Female 74.3
Sample B Female 88.0
Sample C Male 107.9
Sample D Male 91.7

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 133.2
Mouse sample Sample description nTPM
130.6134.2136.8125.9138.80102030405060708090100110120130
 		Caudate putamen
nTPM: 133.3
Samples: 4

Max nTPM: 138.8
Min nTPM: 125.9
Sample A Male 125.9
Sample B Male 132.2
Sample C Female 136.2
Sample D Female 138.8
90.693.395.587.297.70102030405060708090
 		Septum
nTPM: 92.9
Samples: 4

Max nTPM: 97.7
Min nTPM: 87.2
Sample A Male 87.2
Sample B Male 94.8
Sample C Female 91.7
Sample D Female 97.7
108.0112.5117.0106.9117.70102030405060708090100110
 		Ventral forebrain
nTPM: 112.4
Samples: 4

Max nTPM: 117.7
Min nTPM: 106.9
Sample A Male 108.3
Sample B Male 106.9
Sample C Female 117.7
Sample D Female 116.7

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.1
71213216 Antisense, RP_050816_04_A10, Mouse strain C57BL/6J (56 days, male) 1.6
71496387 Antisense, RP_050913_04_D09, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 0.9
71213216 Antisense, RP_050816_04_A10, Mouse strain C57BL/6J (56 days, male) 1.1
71496387 Antisense, RP_050913_04_D09, Mouse strain C57BL/6J (56 days, male) 0.8

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