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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD47 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
312.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
311.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
262.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
242.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
241.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
225.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
221.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
219.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
219.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
206.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
193.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
171.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
168.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
148.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
143.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
143.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
143.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
140.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
138.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
137.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
136.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
132.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
130.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
124.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
123.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
120.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
119.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
119.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
116.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
115.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
114.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
113.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
110.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
109.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
107.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
107.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
106.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
103.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
101.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
100.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
99.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
99.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
95.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
95.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
94.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
90.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
88.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
87.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
84.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
84.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
83.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
83.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
81.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
81.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
80.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
80.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
80.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
80.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
79.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
79.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
79.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
78.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
78.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
77.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
77.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
77.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
77.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
76.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
76.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
76.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
75.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
75.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
75.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
74.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
74.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
73.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
72.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
72.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
72.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
71.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
71.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
71.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
71.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
70.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
70.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
69.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
69.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
69.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
69.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
68.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
68.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
68.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
66.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
66.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
66.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
66.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
66.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
65.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
64.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
64.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
63.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
63.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
63.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
63.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
63.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
63.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
62.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
62.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
62.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
61.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
61.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
61.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
59.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
59.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
59.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
59.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
59.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
59.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
59.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
58.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
58.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
57.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
57.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
57.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
57.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
57.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
57.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
56.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
56.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
56.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
56.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
55.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
55.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
55.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
54.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
54.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
54.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
54.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
54.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
54.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
54.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
53.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
53.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
53.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
53.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
52.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
52.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
52.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
52.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
52.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
52.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
52.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
51.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
51.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
51.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
50.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
50.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
50.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
50.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
50.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
50.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
50.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
49.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
49.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
49.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
49.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
49.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
48.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
48.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
48.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
48.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
48.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
48.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
47.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
47.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
47.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
47.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
46.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
46.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
46.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
46.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
46.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
46.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
45.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
45.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
45.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
45.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
45.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
45.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
44.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
44.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
44.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
44.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
44.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
44.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
44.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
44.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
44.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
43.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
42.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
42.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
42.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
42.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
42.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
41.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
41.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
41.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
40.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
40.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
40.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
40.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
39.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
39.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
39.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
39.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
39.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
38.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
38.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
38.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
37.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
37.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
37.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
37.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
37.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
36.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
36.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
36.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
35.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
35.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
35.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
35.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
35.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
34.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
34.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
34.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
33.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
33.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
33.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
33.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
33.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
33.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
32.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
32.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
32.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
31.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
31.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
31.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
31.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
31.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
30.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
30.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
30.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
30.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
29.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
29.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
29.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
28.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
28.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
28.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
27.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
25.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
24.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
24.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
23.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
22.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
21.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
20.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
17.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CD47 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.4
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
67.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
57.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
55.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
47.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
44.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
36.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
35.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
31.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
865
Tumor
1.4
951
Tumor
1.2
395
Tumor
1.1
211
Tumor
1.0
553
Tumor
1.0
471
Tumor
0.9
917
Tumor
0.9
311
Tumor
0.8
478
Normal
0.8
536
Normal
0.7
498
Normal
0.7
497
Tumor
0.7
954
Normal
0.7
192
Normal
0.7
538
Normal
0.6
523
Tumor
0.6
545
Tumor
0.6
915
Tumor
0.6
415
Tumor
0.6
524
Normal
0.5
686
Normal
0.5
938
Normal
0.5
1014
Normal
0.5
328
Normal
0.5
492
Normal
0.5
493
Tumor
0.5
984
Normal
0.5
922
Normal
0.5
878
Normal
0.5
916
Normal
0.5
212
Normal
0.5
546
Normal
0.5
978
Normal
0.4
737
Tumor
0.4
884
Normal
0.4
956
Normal
0.4
516
Normal
0.4
716
Normal
0.4
958
Normal
0.4
1044
Normal
0.4
472
Normal
0.4
964
Normal
0.4
952
Normal
0.4
966
Normal
0.4
861
Tumor
0.4
818
Normal
0.4
778
Normal
0.4
823
Tumor
0.4
877
Tumor
0.4
364
Normal
0.4
352
Normal
0.4
224
Normal
0.3
968
Normal
0.3
491
Tumor
0.3
852
Normal
0.3
882
Normal
0.3
1041
Tumor
0.3
467
Tumor
0.3
412
Normal
0.3
125
Tumor
0.3
448
Normal
0.3
696
Normal
0.3
355
Tumor
0.3
1042
Normal
0.3
1032
Normal
0.3
814
Normal
0.3
484
Normal
0.3
816
Normal
0.3
742
Normal
0.3
284
Normal
0.3
824
Normal
0.3
943
Tumor
0.3
697
Tumor
0.3
977
Tumor
0.3
185
Tumor
0.3
416
Normal
0.3
528
Normal
0.3
534
Normal
0.3
213
Tumor
0.3
142
Normal
0.3
926
Normal
0.2
494
Normal
0.2
558
Normal
0.2
883
Tumor
0.2
514
Normal
0.2
554
Normal
0.2
866
Normal
0.2
462
Normal
0.2
944
Normal
0.2
976
Normal
0.2
874
Normal
0.2
518
Normal
0.2
188
Normal
0.2
756
Normal
0.2
283
Tumor
0.2
447
Tumor
0.2
672
Normal
0.2
526
Normal
0.2
474
Normal
0.2
434
Normal
0.2
746
Normal
0.2
482
Normal
0.2
911
Tumor
0.2
488
Normal
0.2
428
Normal
0.2
914
Normal
0.2
557
Tumor
0.2
1021
Tumor
0.2
666
Normal
0.2
786
Normal
0.2
517
Tumor
0.1
146
Normal
0.1
982
Normal
0.1
228
Normal
0.1
918
Normal
0.1
1016
Normal
0.1
727
Tumor
0.1
744
Normal
0.1
714
Normal
0.1
356
Normal
0.1
963
Tumor
0.1
461
Tumor
0.1
535
Tumor
0.1
738
Normal
0.1
572
Normal
0.1
1022
Normal
0.1
444
Normal
0.1
563
Tumor
0.1
868
Normal
0.1
344
Normal
0.1
924
Normal
0.1
386
Normal
0.1
721
Tumor
0.1
1046
Normal
0.1
858
Normal
0.1
342
Normal
0.1
1028
Normal
0.1
723
Tumor
0.1
685
Tumor
0.1
664
Normal
0.1
881
Tumor
0.1
396
Normal
0.0
432
Normal
0.0
857
Tumor
0.0
728
Normal
0.0
525
Tumor
0.0
126
Normal
0.0
387
Tumor
0.0
574
Normal
0.0
573
Tumor
0.0
662
Normal
0.0
912
Normal
0.0
813
Tumor
0.0
1026
Normal
0.0
362
Normal
0.0
368
Normal
0.0
724
Normal
0.0
172
Normal
0.0
414
Normal
0.0
312
Normal
0.0
568
Normal
0.0
745
Tumor
0.0
195
Tumor
0.0
955
Tumor
0.0
665
Tumor
0.0
217
Tumor
0.0
862
Normal
0.0
148
Normal
0.0
354
Normal
0.0
196
Normal
0.0
722
Normal
0.0
376
Normal
0.0
138
Normal
0.0
864
Normal
0.0
481
Tumor
0.0
421
Tumor
0.0
446
Normal
0.0
648
Normal
-0.1
162
Normal
-0.1
628
Normal
-0.1
218
Normal
-0.1
422
Normal
-0.1
473
Tumor
-0.1
384
Normal
-0.1
285
Tumor
-0.1
456
Normal
-0.1
426
Normal
-0.1
343
Tumor
-0.1
136
Normal
-0.1
223
Tumor
-0.1
464
Normal
-0.1
455
Tumor
-0.1
698
Normal
-0.1
436
Normal
-0.1
1043
Tumor
-0.1
128
Normal
-0.1
424
Normal
-0.1
777
Tumor
-0.1
1045
Tumor
-0.1
923
Tumor
-0.1
483
Tumor
-0.1
466
Normal
-0.1
468
Normal
-0.1
975
Tumor
-0.1
953
Tumor
-0.1
272
Normal
-0.1
214
Normal
-0.1
286
Normal
-0.1
268
Normal
-0.1
383
Tumor
-0.1
186
Normal
-0.1
713
Tumor
-0.1
388
Normal
-0.2
394
Normal
-0.2
124
Normal
-0.2
715
Tumor
-0.2
375
Tumor
-0.2
111
Normal
-0.2
671
Tumor
-0.2
661
Tumor
-0.2
392
Normal
-0.2
785
Tumor
-0.2
262
Normal
-0.2
925
Tumor
-0.2
513
Tumor
-0.2
1013
Tumor
-0.2
663
Tumor
-0.2
366
Normal
-0.2
258
Normal
-0.2
161
Tumor
-0.2
278
Normal
-0.2
463
Tumor
-0.2
114
Normal
-0.2
873
Tumor
-0.2
431
Tumor
-0.2
358
Normal
-0.2
332
Normal
-0.2
261
Tumor
-0.3
298
Normal
-0.3
327
Tumor
-0.3
222
Normal
-0.3
137
Tumor
-0.3
618
Normal
-0.3
815
Tumor
-0.3
132
Normal
-0.3
867
Tumor
-0.3
452
Normal
-0.3
341
Tumor
-0.3
913
Tumor
-0.3
353
Tumor
-0.3
271
Tumor
-0.3
433
Tumor
-0.3
135
Tumor
-0.3
851
Tumor
-0.3
755
Tumor
-0.3
636
Normal
-0.3
515
Tumor
-0.3
425
Tumor
-0.3
527
Tumor
-0.3
564
Normal
-0.3
695
Tumor
-0.4
487
Tumor
-0.4
1031
Tumor
-0.4
616
Normal
-0.4
314
Normal
-0.4
465
Tumor
-0.4
297
Tumor
-0.4
567
Tumor
-0.4
863
Tumor
-0.4
981
Tumor
-0.4
817
Tumor
-0.4
113
Tumor
-0.4
411
Tumor
-0.4
232
Normal
-0.4
1025
Tumor
-0.4
443
Tumor
-0.4
191
Tumor
-0.5
351
Tumor
-0.5
187
Tumor
-0.5
141
Tumor
-0.5
957
Tumor
-0.5
427
Tumor
-0.5
741
Tumor
-0.5
642
Normal
-0.6
617
Tumor
-0.6
533
Tumor
-0.6
451
Tumor
-0.6
147
Tumor
-0.6
967
Tumor
-0.6
231
Tumor
-0.6
1027
Tumor
-0.6
937
Tumor
-0.6
445
Tumor
-0.6
145
Tumor
-0.6
257
Tumor
-0.6
1015
Tumor
-0.7
641
Tumor
-0.7
363
Tumor
-0.7
983
Tumor
-0.7
277
Tumor
-0.7
127
Tumor
-0.7
385
Tumor
-0.7
435
Tumor
-0.7
313
Tumor
-0.8
393
Tumor
-0.8
357
Tumor
-0.9
391
Tumor
-0.9
965
Tumor
-0.9
477
Tumor
-0.9
331
Tumor
-0.9
227
Tumor
-1.0
647
Tumor
-1.0
361
Tumor
-1.0
413
Tumor
-1.0
615
Tumor
-1.0
627
Tumor
-1.0
171
Tumor
-1.0
367
Tumor
-1.0
365
Tumor
-1.1
131
Tumor
-1.1
423
Tumor
-1.1
267
Tumor
-1.1
537
Tumor
-1.2
112
Tumor
-1.3
123
Tumor
-1.3
921
Tumor
-1.5
635
Tumor
-1.6
221
Tumor
-2.0
743
Tumor
-2.4
571
Tumor
-2.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
