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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDHAF3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
59.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
37.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
36.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
34.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
33.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
30.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
29.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
28.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
25.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
24.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
23.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
19.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
18.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
16.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
12.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.9
615
Tumor
1.6
627
Tumor
1.5
571
Tumor
1.5
513
Tumor
1.4
481
Tumor
1.3
465
Tumor
1.3
695
Tumor
1.3
1013
Tumor
1.2
785
Tumor
1.2
741
Tumor
1.1
527
Tumor
1.0
635
Tumor
1.0
477
Tumor
1.0
231
Tumor
0.9
867
Tumor
0.9
915
Tumor
0.9
435
Tumor
0.8
1041
Tumor
0.8
195
Tumor
0.8
742
Normal
0.8
865
Tumor
0.8
1027
Tumor
0.8
911
Tumor
0.8
171
Tumor
0.7
755
Tumor
0.7
925
Tumor
0.7
557
Tumor
0.7
137
Tumor
0.7
685
Tumor
0.7
554
Normal
0.6
1045
Tumor
0.6
393
Tumor
0.6
483
Tumor
0.6
861
Tumor
0.6
411
Tumor
0.6
728
Normal
0.5
327
Tumor
0.5
473
Tumor
0.5
222
Normal
0.5
491
Tumor
0.5
357
Tumor
0.5
472
Normal
0.5
313
Tumor
0.4
461
Tumor
0.4
642
Normal
0.4
913
Tumor
0.4
493
Tumor
0.4
436
Normal
0.4
944
Normal
0.4
868
Normal
0.4
261
Tumor
0.4
957
Tumor
0.4
738
Normal
0.4
487
Tumor
0.4
462
Normal
0.4
616
Normal
0.4
445
Tumor
0.4
1016
Normal
0.4
873
Tumor
0.4
466
Normal
0.4
525
Tumor
0.4
423
Tumor
0.3
923
Tumor
0.3
697
Tumor
0.3
648
Normal
0.3
482
Normal
0.3
1032
Normal
0.3
328
Normal
0.3
964
Normal
0.3
926
Normal
0.3
864
Normal
0.3
813
Tumor
0.3
132
Normal
0.3
312
Normal
0.3
953
Tumor
0.3
786
Normal
0.3
1015
Tumor
0.3
534
Normal
0.3
412
Normal
0.3
431
Tumor
0.3
858
Normal
0.3
647
Tumor
0.3
715
Tumor
0.2
574
Normal
0.2
213
Tumor
0.2
474
Normal
0.2
862
Normal
0.2
546
Normal
0.2
874
Normal
0.2
196
Normal
0.2
136
Normal
0.2
883
Tumor
0.2
713
Tumor
0.2
278
Normal
0.2
484
Normal
0.2
537
Tumor
0.2
977
Tumor
0.2
1014
Normal
0.2
714
Normal
0.2
922
Normal
0.2
364
Normal
0.2
937
Tumor
0.2
665
Tumor
0.2
866
Normal
0.2
618
Normal
0.2
824
Normal
0.2
448
Normal
0.2
138
Normal
0.1
863
Tumor
0.1
666
Normal
0.1
924
Normal
0.1
564
Normal
0.1
533
Tumor
0.1
387
Tumor
0.1
1046
Normal
0.1
298
Normal
0.1
146
Normal
0.1
938
Normal
0.1
965
Tumor
0.1
568
Normal
0.1
573
Tumor
0.1
918
Normal
0.1
1022
Normal
0.1
356
Normal
0.1
214
Normal
0.1
563
Tumor
0.1
428
Normal
0.1
884
Normal
0.1
416
Normal
0.1
355
Tumor
0.1
982
Normal
0.1
413
Tumor
0.1
912
Normal
0.1
756
Normal
0.1
446
Normal
0.1
1026
Normal
0.1
981
Tumor
0.1
572
Normal
0.1
777
Tumor
0.1
976
Normal
0.1
414
Normal
0.1
518
Normal
0.1
914
Normal
0.1
161
Tumor
0.1
696
Normal
0.0
743
Tumor
0.0
952
Normal
0.0
664
Normal
0.0
878
Normal
0.0
376
Normal
0.0
1042
Normal
0.0
526
Normal
0.0
724
Normal
0.0
422
Normal
0.0
746
Normal
0.0
663
Tumor
0.0
528
Normal
0.0
636
Normal
0.0
1021
Tumor
0.0
628
Normal
0.0
123
Tumor
0.0
1043
Tumor
0.0
192
Normal
0.0
716
Normal
0.0
882
Normal
0.0
558
Normal
0.0
723
Tumor
0.0
514
Normal
0.0
451
Tumor
0.0
814
Normal
0.0
818
Normal
0.0
823
Tumor
-0.1
452
Normal
-0.1
258
Normal
-0.1
148
Normal
-0.1
415
Tumor
-0.1
963
Tumor
-0.1
524
Normal
-0.1
464
Normal
-0.1
162
Normal
-0.1
111
Normal
-0.1
553
Tumor
-0.1
662
Normal
-0.1
218
Normal
-0.1
141
Tumor
-0.1
424
Normal
-0.1
142
Normal
-0.1
232
Normal
-0.1
267
Tumor
-0.1
686
Normal
-0.1
361
Tumor
-0.1
698
Normal
-0.1
494
Normal
-0.1
366
Normal
-0.1
727
Tumor
-0.1
737
Tumor
-0.1
515
Tumor
-0.1
1028
Normal
-0.1
488
Normal
-0.1
145
Tumor
-0.2
954
Normal
-0.2
135
Tumor
-0.2
523
Tumor
-0.2
916
Normal
-0.2
851
Tumor
-0.2
421
Tumor
-0.2
114
Normal
-0.2
722
Normal
-0.2
297
Tumor
-0.2
955
Tumor
-0.2
433
Tumor
-0.2
744
Normal
-0.2
221
Tumor
-0.2
956
Normal
-0.2
113
Tumor
-0.2
365
Tumor
-0.2
816
Normal
-0.2
1044
Normal
-0.2
778
Normal
-0.2
363
Tumor
-0.2
478
Normal
-0.2
217
Tumor
-0.2
456
Normal
-0.2
443
Tumor
-0.2
191
Tumor
-0.2
881
Tumor
-0.2
857
Tumor
-0.2
672
Normal
-0.2
186
Normal
-0.2
517
Tumor
-0.2
538
Normal
-0.2
388
Normal
-0.2
314
Normal
-0.3
342
Normal
-0.3
383
Tumor
-0.3
332
Normal
-0.3
567
Tumor
-0.3
362
Normal
-0.3
984
Normal
-0.3
172
Normal
-0.3
432
Normal
-0.3
426
Normal
-0.3
341
Tumor
-0.3
444
Normal
-0.3
272
Normal
-0.3
852
Normal
-0.3
425
Tumor
-0.3
468
Normal
-0.3
344
Normal
-0.3
358
Normal
-0.3
721
Tumor
-0.3
394
Normal
-0.3
492
Normal
-0.3
958
Normal
-0.3
951
Tumor
-0.4
268
Normal
-0.4
262
Normal
-0.4
968
Normal
-0.4
257
Tumor
-0.4
1031
Tumor
-0.4
966
Normal
-0.4
671
Tumor
-0.4
978
Normal
-0.4
396
Normal
-0.4
516
Normal
-0.4
617
Tumor
-0.5
368
Normal
-0.5
384
Normal
-0.5
434
Normal
-0.5
497
Tumor
-0.5
131
Tumor
-0.5
536
Normal
-0.5
354
Normal
-0.5
188
Normal
-0.5
1025
Tumor
-0.5
877
Tumor
-0.5
391
Tumor
-0.5
375
Tumor
-0.5
147
Tumor
-0.5
277
Tumor
-0.6
498
Normal
-0.6
641
Tumor
-0.6
471
Tumor
-0.6
975
Tumor
-0.6
126
Normal
-0.6
353
Tumor
-0.6
185
Tumor
-0.6
455
Tumor
-0.6
367
Tumor
-0.6
917
Tumor
-0.6
943
Tumor
-0.6
447
Tumor
-0.6
427
Tumor
-0.7
395
Tumor
-0.7
271
Tumor
-0.7
745
Tumor
-0.7
311
Tumor
-0.7
386
Normal
-0.7
352
Normal
-0.7
331
Tumor
-0.7
535
Tumor
-0.7
187
Tumor
-0.8
351
Tumor
-0.8
815
Tumor
-0.8
392
Normal
-0.8
983
Tumor
-0.9
467
Tumor
-0.9
463
Tumor
-0.9
661
Tumor
-0.9
921
Tumor
-1.0
817
Tumor
-1.0
343
Tumor
-1.1
545
Tumor
-1.1
125
Tumor
-1.4
385
Tumor
-1.5
127
Tumor
-2.2
124
Normal
-2.6
112
Tumor
-3.8
128
Normal
-4.9
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
211
Tumor
N/A
212
Normal
N/A
223
Tumor
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
