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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WNK3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WNK3 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.8
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
3.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
2.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
1.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
1.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
1.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.6
785
Tumor
1.3
473
Tumor
1.0
411
Tumor
1.0
635
Tumor
0.9
937
Tumor
0.9
423
Tumor
0.9
171
Tumor
0.8
393
Tumor
0.8
131
Tumor
0.8
351
Tumor
0.7
647
Tumor
0.7
745
Tumor
0.7
737
Tumor
0.6
483
Tumor
0.6
921
Tumor
0.6
445
Tumor
0.6
435
Tumor
0.6
881
Tumor
0.6
777
Tumor
0.6
1027
Tumor
0.6
665
Tumor
0.5
123
Tumor
0.5
141
Tumor
0.5
515
Tumor
0.5
533
Tumor
0.5
147
Tumor
0.5
363
Tumor
0.5
863
Tumor
0.5
431
Tumor
0.4
465
Tumor
0.4
463
Tumor
0.4
915
Tumor
0.4
341
Tumor
0.4
861
Tumor
0.4
137
Tumor
0.4
365
Tumor
0.4
277
Tumor
0.3
461
Tumor
0.3
513
Tumor
0.3
1045
Tumor
0.3
271
Tumor
0.3
851
Tumor
0.3
965
Tumor
0.3
357
Tumor
0.3
221
Tumor
0.3
361
Tumor
0.3
493
Tumor
0.3
285
Tumor
0.3
487
Tumor
0.3
313
Tumor
0.3
977
Tumor
0.3
755
Tumor
0.2
391
Tumor
0.2
567
Tumor
0.2
523
Tumor
0.2
884
Normal
0.2
161
Tumor
0.2
571
Tumor
0.2
327
Tumor
0.2
484
Normal
0.2
1031
Tumor
0.2
537
Tumor
0.2
615
Tumor
0.2
867
Tumor
0.2
358
Normal
0.2
727
Tumor
0.2
912
Normal
0.2
695
Tumor
0.2
446
Normal
0.2
343
Tumor
0.1
387
Tumor
0.1
1043
Tumor
0.1
331
Tumor
0.1
332
Normal
0.1
913
Tumor
0.1
127
Tumor
0.1
815
Tumor
0.1
938
Normal
0.1
432
Normal
0.1
481
Tumor
0.1
964
Normal
0.1
283
Tumor
0.1
877
Tumor
0.1
661
Tumor
0.1
617
Tumor
0.1
563
Tumor
0.1
883
Tumor
0.1
663
Tumor
0.1
641
Tumor
0.1
873
Tumor
0.1
451
Tumor
0.1
573
Tumor
0.1
911
Tumor
0.1
545
Tumor
0.1
436
Normal
0.1
297
Tumor
0.1
857
Tumor
0.1
1025
Tumor
0.1
882
Normal
0.1
958
Normal
0.1
951
Tumor
0.1
954
Normal
0.1
462
Normal
0.1
278
Normal
0.1
452
Normal
0.1
756
Normal
0.1
817
Tumor
0.1
922
Normal
0.1
328
Normal
0.1
471
Tumor
0.1
267
Tumor
0.1
813
Tumor
0.1
464
Normal
0.1
1014
Normal
0.0
963
Tumor
0.0
195
Tumor
0.0
478
Normal
0.0
918
Normal
0.0
472
Normal
0.0
564
Normal
0.0
412
Normal
0.0
356
Normal
0.0
558
Normal
0.0
568
Normal
0.0
1021
Tumor
0.0
112
Tumor
0.0
572
Normal
0.0
648
Normal
0.0
518
Normal
0.0
864
Normal
0.0
375
Tumor
0.0
142
Normal
0.0
185
Tumor
0.0
494
Normal
0.0
865
Tumor
0.0
664
Normal
0.0
1016
Normal
0.0
428
Normal
0.0
426
Normal
0.0
982
Normal
0.0
671
Tumor
0.0
138
Normal
0.0
866
Normal
0.0
525
Tumor
0.0
261
Tumor
0.0
427
Tumor
0.0
353
Tumor
0.0
354
Normal
0.0
422
Normal
0.0
628
Normal
0.0
433
Tumor
0.0
498
Normal
0.0
482
Normal
0.0
212
Normal
0.0
362
Normal
0.0
685
Tumor
0.0
228
Normal
0.0
984
Normal
0.0
1015
Tumor
0.0
741
Tumor
0.0
526
Normal
0.0
344
Normal
0.0
386
Normal
0.0
975
Tumor
0.0
447
Tumor
0.0
394
Normal
0.0
342
Normal
0.0
227
Tumor
0.0
666
Normal
0.0
627
Tumor
0.0
978
Normal
0.0
743
Tumor
0.0
474
Normal
0.0
396
Normal
0.0
546
Normal
0.0
574
Normal
0.0
311
Tumor
0.0
955
Tumor
0.0
187
Tumor
0.0
786
Normal
-0.1
944
Normal
-0.1
224
Normal
-0.1
448
Normal
-0.1
713
Tumor
-0.1
517
Tumor
-0.1
425
Tumor
-0.1
126
Normal
-0.1
976
Normal
-0.1
697
Tumor
-0.1
672
Normal
-0.1
424
Normal
-0.1
368
Normal
-0.1
268
Normal
-0.1
124
Normal
-0.1
534
Normal
-0.1
196
Normal
-0.1
258
Normal
-0.1
414
Normal
-0.1
557
Tumor
-0.1
136
Normal
-0.1
1042
Normal
-0.1
223
Tumor
-0.1
146
Normal
-0.1
662
Normal
-0.1
385
Tumor
-0.1
443
Tumor
-0.1
286
Normal
-0.1
553
Tumor
-0.1
488
Normal
-0.1
415
Tumor
-0.1
862
Normal
-0.1
367
Tumor
-0.1
514
Normal
-0.1
434
Normal
-0.1
262
Normal
-0.1
272
Normal
-0.1
528
Normal
-0.1
824
Normal
-0.1
314
Normal
-0.1
966
Normal
-0.1
416
Normal
-0.1
924
Normal
-0.1
878
Normal
-0.1
284
Normal
-0.1
536
Normal
-0.1
858
Normal
-0.1
213
Tumor
-0.1
364
Normal
-0.1
516
Normal
-0.1
222
Normal
-0.1
492
Normal
-0.1
128
Normal
-0.1
1032
Normal
-0.1
538
Normal
-0.1
352
Normal
-0.1
852
Normal
-0.1
916
Normal
-0.1
814
Normal
-0.1
355
Tumor
-0.1
132
Normal
-0.1
618
Normal
-0.2
444
Normal
-0.2
211
Tumor
-0.2
926
Normal
-0.2
636
Normal
-0.2
728
Normal
-0.2
231
Tumor
-0.2
232
Normal
-0.2
388
Normal
-0.2
968
Normal
-0.2
477
Tumor
-0.2
914
Normal
-0.2
554
Normal
-0.2
527
Tumor
-0.2
456
Normal
-0.2
953
Tumor
-0.2
366
Normal
-0.2
983
Tumor
-0.2
392
Normal
-0.2
716
Normal
-0.2
312
Normal
-0.2
925
Tumor
-0.2
148
Normal
-0.2
125
Tumor
-0.2
114
Normal
-0.2
145
Tumor
-0.2
818
Normal
-0.2
778
Normal
-0.2
111
Normal
-0.2
188
Normal
-0.2
376
Normal
-0.2
696
Normal
-0.2
421
Tumor
-0.2
468
Normal
-0.2
455
Tumor
-0.2
742
Normal
-0.2
686
Normal
-0.2
956
Normal
-0.2
524
Normal
-0.2
172
Normal
-0.2
413
Tumor
-0.2
746
Normal
-0.2
135
Tumor
-0.2
874
Normal
-0.3
186
Normal
-0.3
298
Normal
-0.3
957
Tumor
-0.3
466
Normal
-0.3
967
Tumor
-0.3
162
Normal
-0.3
923
Tumor
-0.3
113
Tumor
-0.3
467
Tumor
-0.3
217
Tumor
-0.3
816
Normal
-0.3
723
Tumor
-0.3
738
Normal
-0.3
981
Tumor
-0.3
823
Tumor
-0.3
714
Normal
-0.3
943
Tumor
-0.3
952
Normal
-0.3
535
Tumor
-0.3
722
Normal
-0.3
744
Normal
-0.3
192
Normal
-0.3
698
Normal
-0.3
868
Normal
-0.3
1028
Normal
-0.3
1026
Normal
-0.4
257
Tumor
-0.4
1046
Normal
-0.4
384
Normal
-0.4
497
Tumor
-0.4
642
Normal
-0.4
383
Tumor
-0.4
1022
Normal
-0.4
721
Tumor
-0.4
917
Tumor
-0.4
616
Normal
-0.4
218
Normal
-0.5
1044
Normal
-0.5
724
Normal
-0.5
214
Normal
-0.5
395
Tumor
-0.6
1041
Tumor
-0.6
491
Tumor
-0.6
191
Tumor
-0.6
715
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
