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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLXNB2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
268.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
170.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
156.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
142.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
140.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
124.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
121.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
116.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
116.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
110.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
101.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
98.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
90.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
89.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
88.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
87.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
83.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
82.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
81.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
79.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
79.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
77.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
76.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
75.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
73.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
73.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
71.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
69.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
67.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
67.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
64.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
64.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
63.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
63.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
63.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
63.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
60.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
59.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
59.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
58.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
57.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
57.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
57.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
57.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
57.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
55.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
55.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
55.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
55.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
54.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
54.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
54.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
53.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
52.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
52.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
51.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
50.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
49.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
48.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
48.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
47.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
47.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
46.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
46.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
46.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
46.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
45.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
45.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
44.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
44.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
44.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
44.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
43.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
43.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
43.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
42.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
40.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
40.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
38.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
37.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
36.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
35.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
35.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
34.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
34.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
33.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
33.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
33.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
33.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
32.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
32.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
31.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
30.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
27.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
25.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
25.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
25.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
24.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
23.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
22.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
21.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
18.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
15.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLXNB2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.2
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
214.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
196.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
188.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
173.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
166.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
139.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
114.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
112.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
109.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
104.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
104.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
96.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
95.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
95.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
89.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
86.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
85.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
85.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
85.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
85.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
84.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
84.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
82.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
82.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
82.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
81.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
80.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
80.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
79.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
79.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
79.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
79.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
77.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
77.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
73.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
72.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
71.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
70.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
69.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
66.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
64.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
64.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
64.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
63.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
63.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
62.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
61.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
60.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
59.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
59.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
59.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
59.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
56.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
56.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
54.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
54.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
54.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
53.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
52.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
52.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
52.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
51.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
51.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
51.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
51.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
50.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
50.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
49.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
49.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
49.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
49.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
48.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
48.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
47.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
47.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
47.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
47.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
47.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
46.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
46.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
46.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
45.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
45.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
45.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
44.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
44.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
44.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
43.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
43.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
43.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
43.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
43.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
43.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
42.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
42.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
42.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
42.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
42.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
42.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
41.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
40.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
40.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
40.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
39.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
39.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
39.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
39.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
39.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
39.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
39.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
38.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
38.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
38.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
37.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
37.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
37.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
37.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
37.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
36.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
36.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
36.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
36.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
36.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
36.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
36.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
35.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
34.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
34.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
34.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
34.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
34.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
33.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
33.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
33.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
32.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
31.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
29.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
29.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
29.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
28.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
25.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
25.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
23.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
231
Tumor
1.1
1015
Tumor
0.7
867
Tumor
0.7
267
Tumor
0.6
171
Tumor
0.6
147
Tumor
0.5
343
Tumor
0.5
915
Tumor
0.4
557
Tumor
0.4
493
Tumor
0.4
785
Tumor
0.4
567
Tumor
0.3
477
Tumor
0.3
685
Tumor
0.3
523
Tumor
0.3
526
Normal
0.3
937
Tumor
0.2
425
Tumor
0.2
393
Tumor
0.2
715
Tumor
0.2
481
Tumor
0.2
483
Tumor
0.2
135
Tumor
0.2
497
Tumor
0.2
387
Tumor
0.2
515
Tumor
0.2
514
Normal
0.2
462
Normal
0.2
356
Normal
0.2
975
Tumor
0.2
328
Normal
0.2
534
Normal
0.2
311
Tumor
0.2
554
Normal
0.2
478
Normal
0.2
546
Normal
0.2
484
Normal
0.2
538
Normal
0.2
413
Tumor
0.2
558
Normal
0.1
452
Normal
0.1
696
Normal
0.1
466
Normal
0.1
427
Tumor
0.1
924
Normal
0.1
465
Tumor
0.1
727
Tumor
0.1
916
Normal
0.1
187
Tumor
0.1
824
Normal
0.1
686
Normal
0.1
474
Normal
0.1
1046
Normal
0.1
395
Tumor
0.1
944
Normal
0.1
192
Normal
0.1
376
Normal
0.1
352
Normal
0.1
188
Normal
0.1
964
Normal
0.1
218
Normal
0.1
977
Tumor
0.1
878
Normal
0.1
518
Normal
0.1
268
Normal
0.1
958
Normal
0.1
568
Normal
0.1
572
Normal
0.1
162
Normal
0.1
545
Tumor
0.1
212
Normal
0.1
111
Normal
0.1
745
Tumor
0.1
145
Tumor
0.1
451
Tumor
0.1
132
Normal
0.1
482
Normal
0.1
412
Normal
0.1
536
Normal
0.1
258
Normal
0.1
952
Normal
0.1
228
Normal
0.1
642
Normal
0.1
528
Normal
0.1
468
Normal
0.1
312
Normal
0.1
446
Normal
0.1
813
Tumor
0.1
628
Normal
0.1
272
Normal
0.1
1028
Normal
0.1
415
Tumor
0.1
444
Normal
0.1
955
Tumor
0.1
1027
Tumor
0.1
737
Tumor
0.1
126
Normal
0.1
698
Normal
0.1
823
Tumor
0.1
786
Normal
0.1
298
Normal
0.1
968
Normal
0.1
136
Normal
0.1
284
Normal
0.1
232
Normal
0.1
911
Tumor
0.1
285
Tumor
0.1
976
Normal
0.1
358
Normal
0.1
494
Normal
0.1
464
Normal
0.1
138
Normal
0.1
618
Normal
0.1
922
Normal
0.1
851
Tumor
0.1
448
Normal
0.1
874
Normal
0.1
142
Normal
0.1
956
Normal
0.1
1016
Normal
0.1
128
Normal
0.1
714
Normal
0.1
516
Normal
0.1
113
Tumor
0.1
926
Normal
0.1
492
Normal
0.1
277
Tumor
0.1
1044
Normal
0.1
716
Normal
0.1
368
Normal
0.1
364
Normal
0.1
967
Tumor
0.1
954
Normal
0.1
917
Tumor
0.1
148
Normal
0.1
114
Normal
0.1
426
Normal
0.0
938
Normal
0.0
742
Normal
0.0
778
Normal
0.0
221
Tumor
0.0
616
Normal
0.0
728
Normal
0.0
278
Normal
0.0
472
Normal
0.0
217
Tumor
0.0
396
Normal
0.0
146
Normal
0.0
262
Normal
0.0
414
Normal
0.0
1032
Normal
0.0
574
Normal
0.0
648
Normal
0.0
443
Tumor
0.0
722
Normal
0.0
186
Normal
0.0
498
Normal
0.0
432
Normal
0.0
984
Normal
0.0
344
Normal
0.0
422
Normal
0.0
738
Normal
0.0
456
Normal
0.0
362
Normal
0.0
436
Normal
0.0
966
Normal
0.0
488
Normal
0.0
327
Tumor
0.0
553
Tumor
0.0
1025
Tumor
0.0
1014
Normal
0.0
224
Normal
0.0
416
Normal
0.0
918
Normal
0.0
852
Normal
0.0
744
Normal
0.0
366
Normal
0.0
868
Normal
0.0
434
Normal
0.0
286
Normal
0.0
524
Normal
0.0
214
Normal
0.0
858
Normal
0.0
388
Normal
0.0
1022
Normal
0.0
421
Tumor
0.0
978
Normal
0.0
1042
Normal
0.0
332
Normal
0.0
196
Normal
0.0
257
Tumor
0.0
756
Normal
0.0
982
Normal
0.0
428
Normal
0.0
445
Tumor
0.0
817
Tumor
0.0
746
Normal
0.0
721
Tumor
0.0
172
Normal
0.0
963
Tumor
0.0
342
Normal
0.0
664
Normal
0.0
223
Tumor
0.0
185
Tumor
0.0
222
Normal
0.0
564
Normal
0.0
666
Normal
0.0
261
Tumor
0.0
461
Tumor
0.0
473
Tumor
0.0
981
Tumor
0.0
816
Normal
0.0
525
Tumor
0.0
914
Normal
0.0
141
Tumor
0.0
1026
Normal
0.0
386
Normal
0.0
1041
Tumor
0.0
818
Normal
0.0
314
Normal
0.0
864
Normal
0.0
865
Tumor
0.0
467
Tumor
0.0
394
Normal
0.0
513
Tumor
0.0
297
Tumor
0.0
862
Normal
0.0
392
Normal
0.0
354
Normal
0.0
866
Normal
0.0
1045
Tumor
0.0
195
Tumor
-0.1
112
Tumor
-0.1
124
Normal
-0.1
423
Tumor
-0.1
951
Tumor
-0.1
636
Normal
-0.1
313
Tumor
-0.1
341
Tumor
-0.1
921
Tumor
-0.1
672
Normal
-0.1
662
Normal
-0.1
533
Tumor
-0.1
723
Tumor
-0.1
191
Tumor
-0.1
424
Normal
-0.1
527
Tumor
-0.1
213
Tumor
-0.1
873
Tumor
-0.1
365
Tumor
-0.1
953
Tumor
-0.1
433
Tumor
-0.1
641
Tumor
-0.1
777
Tumor
-0.1
355
Tumor
-0.1
857
Tumor
-0.1
755
Tumor
-0.1
713
Tumor
-0.1
227
Tumor
-0.1
923
Tumor
-0.1
375
Tumor
-0.1
161
Tumor
-0.1
127
Tumor
-0.1
882
Normal
-0.1
363
Tumor
-0.1
353
Tumor
-0.1
447
Tumor
-0.1
383
Tumor
-0.1
487
Tumor
-0.1
913
Tumor
-0.1
1021
Tumor
-0.1
563
Tumor
-0.2
384
Normal
-0.2
435
Tumor
-0.2
455
Tumor
-0.2
943
Tumor
-0.2
131
Tumor
-0.2
137
Tumor
-0.2
517
Tumor
-0.2
695
Tumor
-0.2
925
Tumor
-0.2
883
Tumor
-0.2
573
Tumor
-0.2
861
Tumor
-0.2
884
Normal
-0.2
627
Tumor
-0.2
361
Tumor
-0.2
617
Tumor
-0.2
661
Tumor
-0.2
537
Tumor
-0.2
331
Tumor
-0.2
271
Tumor
-0.2
814
Normal
-0.2
463
Tumor
-0.2
635
Tumor
-0.2
125
Tumor
-0.2
1043
Tumor
-0.2
983
Tumor
-0.3
647
Tumor
-0.3
211
Tumor
-0.3
912
Normal
-0.3
571
Tumor
-0.3
881
Tumor
-0.3
615
Tumor
-0.3
671
Tumor
-0.3
697
Tumor
-0.3
724
Normal
-0.3
357
Tumor
-0.3
431
Tumor
-0.3
471
Tumor
-0.3
123
Tumor
-0.3
743
Tumor
-0.3
1031
Tumor
-0.3
957
Tumor
-0.3
491
Tumor
-0.3
411
Tumor
-0.3
815
Tumor
-0.4
283
Tumor
-0.4
367
Tumor
-0.4
535
Tumor
-0.4
741
Tumor
-0.4
665
Tumor
-0.4
385
Tumor
-0.4
663
Tumor
-0.4
1013
Tumor
-0.4
965
Tumor
-0.5
863
Tumor
-0.5
391
Tumor
-0.5
351
Tumor
-0.7
877
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
