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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYO18A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
62.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
4.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYO18A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.0
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
77.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
68.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
66.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
59.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
54.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
53.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
53.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
50.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
49.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
49.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
49.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
48.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
46.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
45.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
45.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
43.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
43.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
42.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
39.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
39.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
38.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
38.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
36.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
36.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
36.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
35.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
35.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
35.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
35.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
34.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
33.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
33.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
32.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
31.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
31.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
30.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
28.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
26.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
25.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
25.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
25.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
23.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
23.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
23.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
22.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
18.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
16.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
0.9
981
Tumor
0.8
635
Tumor
0.8
112
Tumor
0.6
513
Tumor
0.6
925
Tumor
0.6
937
Tumor
0.6
431
Tumor
0.6
695
Tumor
0.5
353
Tumor
0.5
465
Tumor
0.5
423
Tumor
0.5
865
Tumor
0.4
477
Tumor
0.4
955
Tumor
0.4
954
Normal
0.4
944
Normal
0.4
425
Tumor
0.3
924
Normal
0.3
448
Normal
0.3
1028
Normal
0.3
554
Normal
0.3
445
Tumor
0.3
484
Normal
0.3
867
Tumor
0.3
861
Tumor
0.3
213
Tumor
0.3
452
Normal
0.3
958
Normal
0.3
534
Normal
0.3
964
Normal
0.3
922
Normal
0.3
1032
Normal
0.3
745
Tumor
0.3
1022
Normal
0.3
412
Normal
0.3
327
Tumor
0.3
538
Normal
0.3
1014
Normal
0.3
546
Normal
0.3
938
Normal
0.3
918
Normal
0.3
813
Tumor
0.3
443
Tumor
0.3
984
Normal
0.3
568
Normal
0.2
862
Normal
0.2
527
Tumor
0.2
128
Normal
0.2
686
Normal
0.2
515
Tumor
0.2
487
Tumor
0.2
698
Normal
0.2
714
Normal
0.2
142
Normal
0.2
516
Normal
0.2
968
Normal
0.2
462
Normal
0.2
488
Normal
0.2
864
Normal
0.2
196
Normal
0.2
113
Tumor
0.2
526
Normal
0.2
558
Normal
0.2
628
Normal
0.2
956
Normal
0.2
982
Normal
0.2
636
Normal
0.2
356
Normal
0.2
494
Normal
0.2
365
Tumor
0.2
742
Normal
0.2
528
Normal
0.2
618
Normal
0.2
497
Tumor
0.2
222
Normal
0.2
1027
Tumor
0.2
978
Normal
0.2
756
Normal
0.2
926
Normal
0.2
878
Normal
0.2
344
Normal
0.2
536
Normal
0.2
342
Normal
0.2
738
Normal
0.2
127
Tumor
0.2
786
Normal
0.2
482
Normal
0.2
514
Normal
0.2
778
Normal
0.2
1046
Normal
0.2
977
Tumor
0.2
723
Tumor
0.2
616
Normal
0.2
915
Tumor
0.2
416
Normal
0.2
426
Normal
0.2
866
Normal
0.2
468
Normal
0.2
976
Normal
0.2
472
Normal
0.2
966
Normal
0.2
572
Normal
0.2
1044
Normal
0.1
518
Normal
0.1
1043
Tumor
0.1
1013
Tumor
0.1
873
Tumor
0.1
474
Normal
0.1
218
Normal
0.1
816
Normal
0.1
524
Normal
0.1
415
Tumor
0.1
186
Normal
0.1
823
Tumor
0.1
432
Normal
0.1
824
Normal
0.1
435
Tumor
0.1
685
Tumor
0.1
286
Normal
0.1
523
Tumor
0.1
466
Normal
0.1
478
Normal
0.1
746
Normal
0.1
212
Normal
0.1
298
Normal
0.1
642
Normal
0.1
851
Tumor
0.1
574
Normal
0.1
728
Normal
0.1
952
Normal
0.1
376
Normal
0.1
492
Normal
0.1
341
Tumor
0.1
884
Normal
0.1
314
Normal
0.1
1042
Normal
0.1
744
Normal
0.1
332
Normal
0.1
328
Normal
0.1
696
Normal
0.1
868
Normal
0.1
914
Normal
0.1
214
Normal
0.1
278
Normal
0.1
228
Normal
0.1
564
Normal
0.1
467
Tumor
0.1
916
Normal
0.1
421
Tumor
0.1
137
Tumor
0.1
368
Normal
0.1
446
Normal
0.1
912
Normal
0.1
464
Normal
0.1
172
Normal
0.1
388
Normal
0.1
114
Normal
0.1
358
Normal
0.1
648
Normal
0.1
493
Tumor
0.1
148
Normal
0.1
268
Normal
0.1
396
Normal
0.1
557
Tumor
0.1
187
Tumor
0.1
352
Normal
0.1
361
Tumor
0.1
716
Normal
0.1
132
Normal
0.1
498
Normal
0.1
284
Normal
0.1
755
Tumor
0.1
1026
Normal
0.1
414
Normal
0.1
722
Normal
0.1
852
Normal
0.1
567
Tumor
0.1
357
Tumor
0.1
434
Normal
0.1
481
Tumor
0.1
364
Normal
0.1
882
Normal
0.1
1016
Normal
0.1
422
Normal
0.1
232
Normal
0.1
272
Normal
0.0
138
Normal
0.0
433
Tumor
0.0
188
Normal
0.0
162
Normal
0.0
858
Normal
0.0
436
Normal
0.0
262
Normal
0.0
785
Tumor
0.0
983
Tumor
0.0
393
Tumor
0.0
666
Normal
0.0
525
Tumor
0.0
874
Normal
0.0
483
Tumor
0.0
384
Normal
0.0
727
Tumor
0.0
424
Normal
0.0
883
Tumor
0.0
662
Normal
0.0
563
Tumor
0.0
818
Normal
0.0
1025
Tumor
0.0
413
Tumor
0.0
456
Normal
0.0
136
Normal
0.0
665
Tumor
0.0
627
Tumor
0.0
857
Tumor
0.0
362
Normal
0.0
124
Normal
0.0
967
Tumor
0.0
147
Tumor
0.0
392
Normal
0.0
354
Normal
0.0
428
Normal
0.0
664
Normal
0.0
444
Normal
0.0
1031
Tumor
0.0
455
Tumor
0.0
224
Normal
0.0
363
Tumor
0.0
617
Tumor
0.0
721
Tumor
0.0
221
Tumor
0.0
1045
Tumor
0.0
261
Tumor
0.0
715
Tumor
0.0
672
Normal
0.0
145
Tumor
0.0
312
Normal
0.0
383
Tumor
0.0
146
Normal
0.0
1021
Tumor
0.0
111
Normal
0.0
451
Tumor
0.0
471
Tumor
0.0
923
Tumor
-0.1
386
Normal
-0.1
573
Tumor
-0.1
913
Tumor
-0.1
394
Normal
-0.1
366
Normal
-0.1
267
Tumor
-0.1
126
Normal
-0.1
553
Tumor
-0.1
815
Tumor
-0.1
227
Tumor
-0.1
921
Tumor
-0.1
1015
Tumor
-0.1
141
Tumor
-0.1
171
Tumor
-0.1
192
Normal
-0.1
814
Normal
-0.1
957
Tumor
-0.1
185
Tumor
-0.1
953
Tumor
-0.1
223
Tumor
-0.1
123
Tumor
-0.1
191
Tumor
-0.1
427
Tumor
-0.1
1041
Tumor
-0.1
615
Tumor
-0.1
231
Tumor
-0.1
355
Tumor
-0.1
257
Tumor
-0.1
258
Normal
-0.2
911
Tumor
-0.2
641
Tumor
-0.2
195
Tumor
-0.2
517
Tumor
-0.2
411
Tumor
-0.2
391
Tumor
-0.2
963
Tumor
-0.2
975
Tumor
-0.2
311
Tumor
-0.2
217
Tumor
-0.2
461
Tumor
-0.2
713
Tumor
-0.2
741
Tumor
-0.2
663
Tumor
-0.2
881
Tumor
-0.2
277
Tumor
-0.2
951
Tumor
-0.2
647
Tumor
-0.2
545
Tumor
-0.3
447
Tumor
-0.3
387
Tumor
-0.3
211
Tumor
-0.3
271
Tumor
-0.3
395
Tumor
-0.3
965
Tumor
-0.3
473
Tumor
-0.3
917
Tumor
-0.3
161
Tumor
-0.3
313
Tumor
-0.3
285
Tumor
-0.3
571
Tumor
-0.3
331
Tumor
-0.3
135
Tumor
-0.3
131
Tumor
-0.4
351
Tumor
-0.4
943
Tumor
-0.4
697
Tumor
-0.4
743
Tumor
-0.4
817
Tumor
-0.4
537
Tumor
-0.4
297
Tumor
-0.4
463
Tumor
-0.4
863
Tumor
-0.4
535
Tumor
-0.5
491
Tumor
-0.5
125
Tumor
-0.5
343
Tumor
-0.5
375
Tumor
-0.6
724
Normal
-0.6
777
Tumor
-0.6
737
Tumor
-0.7
661
Tumor
-0.7
671
Tumor
-0.8
283
Tumor
-0.8
877
Tumor
-0.8
367
Tumor
-0.8
385
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
