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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYL6B is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
122.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
117.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
106.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
105.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
98.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
82.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
79.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
71.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
68.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
67.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
67.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
66.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
64.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
64.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
61.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
60.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
59.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
56.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
56.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
54.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
53.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
52.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
52.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
49.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
49.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
48.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
46.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
45.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
45.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
44.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
44.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
44.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
43.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
42.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
41.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
41.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
41.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
40.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
40.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
40.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
39.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
39.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
39.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
38.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
38.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
38.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
36.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
36.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
36.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
36.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
36.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
35.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
35.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
34.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
33.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
32.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
32.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
32.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
32.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
32.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
31.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
30.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
30.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
30.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
30.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
29.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
29.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
29.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
28.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
27.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
27.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
27.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
26.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
25.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
23.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
23.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
22.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
21.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
20.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
20.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
19.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
15.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYL6B is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.4
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
98.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
69.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
69.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
67.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
62.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
61.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
59.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
58.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
57.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
54.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
54.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
54.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
49.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
47.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
46.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
44.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
44.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
42.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
40.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
39.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
39.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
38.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
34.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
33.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
32.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
30.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
27.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
365
Tumor
1.0
545
Tumor
0.6
917
Tumor
0.6
192
Normal
0.5
536
Normal
0.5
498
Normal
0.5
311
Tumor
0.4
538
Normal
0.4
943
Tumor
0.4
516
Normal
0.4
478
Normal
0.4
967
Tumor
0.4
635
Tumor
0.4
492
Normal
0.4
727
Tumor
0.3
924
Normal
0.3
785
Tumor
0.3
923
Tumor
0.3
958
Normal
0.3
355
Tumor
0.3
1045
Tumor
0.3
813
Tumor
0.3
627
Tumor
0.3
185
Tumor
0.3
878
Normal
0.3
297
Tumor
0.3
982
Normal
0.2
137
Tumor
0.2
874
Normal
0.2
698
Normal
0.2
513
Tumor
0.2
1028
Normal
0.2
916
Normal
0.2
412
Normal
0.2
823
Tumor
0.2
455
Tumor
0.2
363
Tumor
0.2
524
Normal
0.2
976
Normal
0.2
331
Tumor
0.2
223
Tumor
0.2
421
Tumor
0.2
921
Tumor
0.2
952
Normal
0.2
471
Tumor
0.2
956
Normal
0.2
212
Normal
0.2
472
Normal
0.2
883
Tumor
0.2
268
Normal
0.2
744
Normal
0.2
527
Tumor
0.2
918
Normal
0.1
816
Normal
0.1
957
Tumor
0.1
283
Tumor
0.1
416
Normal
0.1
672
Normal
0.1
723
Tumor
0.1
778
Normal
0.1
386
Normal
0.1
1015
Tumor
0.1
852
Normal
0.1
474
Normal
0.1
415
Tumor
0.1
535
Tumor
0.1
461
Tumor
0.1
447
Tumor
0.1
546
Normal
0.1
284
Normal
0.1
494
Normal
0.1
572
Normal
0.1
448
Normal
0.1
925
Tumor
0.1
224
Normal
0.1
228
Normal
0.1
188
Normal
0.1
814
Normal
0.1
671
Tumor
0.1
715
Tumor
0.1
344
Normal
0.1
146
Normal
0.1
528
Normal
0.1
975
Tumor
0.1
497
Tumor
0.1
743
Tumor
0.1
914
Normal
0.1
714
Normal
0.1
375
Tumor
0.1
697
Tumor
0.1
881
Tumor
0.1
817
Tumor
0.1
366
Normal
0.1
938
Normal
0.1
737
Tumor
0.1
968
Normal
0.1
477
Tumor
0.1
716
Normal
0.1
866
Normal
0.1
126
Normal
0.1
195
Tumor
0.0
911
Tumor
0.0
488
Normal
0.0
746
Normal
0.0
534
Normal
0.0
922
Normal
0.0
563
Tumor
0.0
434
Normal
0.0
343
Tumor
0.0
868
Normal
0.0
738
Normal
0.0
214
Normal
0.0
364
Normal
0.0
327
Tumor
0.0
124
Normal
0.0
686
Normal
0.0
954
Normal
0.0
984
Normal
0.0
857
Tumor
0.0
554
Normal
0.0
983
Tumor
0.0
745
Tumor
0.0
568
Normal
0.0
786
Normal
0.0
1044
Normal
0.0
286
Normal
0.0
312
Normal
0.0
484
Normal
0.0
394
Normal
0.0
862
Normal
0.0
574
Normal
0.0
728
Normal
0.0
368
Normal
0.0
696
Normal
0.0
777
Tumor
0.0
966
Normal
0.0
142
Normal
0.0
444
Normal
0.0
211
Tumor
0.0
965
Tumor
0.0
964
Normal
0.0
277
Tumor
0.0
742
Normal
0.0
1016
Normal
0.0
396
Normal
0.0
518
Normal
0.0
213
Tumor
0.0
328
Normal
0.0
642
Normal
0.0
514
Normal
0.0
944
Normal
0.0
553
Tumor
-0.1
483
Tumor
-0.1
462
Normal
-0.1
755
Tumor
-0.1
713
Tumor
-0.1
695
Tumor
-0.1
367
Tumor
-0.1
1042
Normal
-0.1
218
Normal
-0.1
392
Normal
-0.1
571
Tumor
-0.1
131
Tumor
-0.1
685
Tumor
-0.1
863
Tumor
-0.1
388
Normal
-0.1
721
Tumor
-0.1
464
Normal
-0.1
482
Normal
-0.1
357
Tumor
-0.1
258
Normal
-0.1
376
Normal
-0.1
278
Normal
-0.1
1026
Normal
-0.1
877
Tumor
-0.1
915
Tumor
-0.1
864
Normal
-0.1
383
Tumor
-0.1
515
Tumor
-0.1
867
Tumor
-0.1
138
Normal
-0.1
456
Normal
-0.1
662
Normal
-0.1
493
Tumor
-0.1
963
Tumor
-0.1
882
Normal
-0.1
937
Tumor
-0.1
473
Tumor
-0.1
445
Tumor
-0.1
196
Normal
-0.1
913
Tumor
-0.1
756
Normal
-0.1
262
Normal
-0.1
423
Tumor
-0.1
272
Normal
-0.1
722
Normal
-0.1
285
Tumor
-0.1
141
Tumor
-0.1
356
Normal
-0.1
463
Tumor
-0.1
873
Tumor
-0.1
114
Normal
-0.1
1022
Normal
-0.1
664
Normal
-0.1
1031
Tumor
-0.1
257
Tumor
-0.2
558
Normal
-0.2
537
Tumor
-0.2
422
Normal
-0.2
222
Normal
-0.2
491
Tumor
-0.2
615
Tumor
-0.2
618
Normal
-0.2
426
Normal
-0.2
186
Normal
-0.2
361
Tumor
-0.2
523
Tumor
-0.2
395
Tumor
-0.2
517
Tumor
-0.2
414
Normal
-0.2
342
Normal
-0.2
526
Normal
-0.2
298
Normal
-0.2
955
Tumor
-0.2
362
Normal
-0.2
424
Normal
-0.2
332
Normal
-0.2
564
Normal
-0.2
341
Tumor
-0.2
172
Normal
-0.2
465
Tumor
-0.2
136
Normal
-0.2
1043
Tumor
-0.2
384
Normal
-0.2
313
Tumor
-0.2
125
Tumor
-0.2
187
Tumor
-0.2
387
Tumor
-0.2
111
Normal
-0.2
953
Tumor
-0.2
385
Tumor
-0.2
261
Tumor
-0.2
393
Tumor
-0.2
865
Tumor
-0.2
452
Normal
-0.2
217
Tumor
-0.2
824
Normal
-0.2
617
Tumor
-0.2
433
Tumor
-0.2
487
Tumor
-0.2
162
Normal
-0.2
628
Normal
-0.2
1032
Normal
-0.2
926
Normal
-0.2
232
Normal
-0.2
231
Tumor
-0.2
481
Tumor
-0.3
647
Tumor
-0.3
1021
Tumor
-0.3
466
Normal
-0.3
1027
Tumor
-0.3
436
Normal
-0.3
428
Normal
-0.3
432
Normal
-0.3
1013
Tumor
-0.3
354
Normal
-0.3
1014
Normal
-0.3
636
Normal
-0.3
191
Tumor
-0.3
724
Normal
-0.3
128
Normal
-0.3
661
Tumor
-0.3
148
Normal
-0.3
227
Tumor
-0.3
443
Tumor
-0.3
161
Tumor
-0.3
884
Normal
-0.3
861
Tumor
-0.3
221
Tumor
-0.3
951
Tumor
-0.3
525
Tumor
-0.3
648
Normal
-0.3
567
Tumor
-0.3
411
Tumor
-0.3
858
Normal
-0.3
352
Normal
-0.3
127
Tumor
-0.3
851
Tumor
-0.3
427
Tumor
-0.3
112
Tumor
-0.3
135
Tumor
-0.3
351
Tumor
-0.3
1025
Tumor
-0.4
446
Normal
-0.4
533
Tumor
-0.4
977
Tumor
-0.4
267
Tumor
-0.4
147
Tumor
-0.4
425
Tumor
-0.4
145
Tumor
-0.4
271
Tumor
-0.4
353
Tumor
-0.4
663
Tumor
-0.4
468
Normal
-0.4
413
Tumor
-0.4
451
Tumor
-0.4
815
Tumor
-0.4
132
Normal
-0.4
912
Normal
-0.4
981
Tumor
-0.4
113
Tumor
-0.4
666
Normal
-0.4
616
Normal
-0.4
741
Tumor
-0.4
978
Normal
-0.4
467
Tumor
-0.5
123
Tumor
-0.5
1046
Normal
-0.5
358
Normal
-0.5
818
Normal
-0.5
557
Tumor
-0.5
171
Tumor
-0.6
641
Tumor
-0.6
1041
Tumor
-0.6
314
Normal
-0.6
391
Tumor
-0.6
573
Tumor
-0.7
435
Tumor
-0.7
431
Tumor
-0.8
665
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
