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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YRDC is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YRDC is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.0
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
617
Tumor
3.3
957
Tumor
1.0
395
Tumor
0.9
628
Normal
0.9
618
Normal
0.9
537
Tumor
0.9
636
Normal
0.8
925
Tumor
0.8
863
Tumor
0.8
423
Tumor
0.7
387
Tumor
0.7
965
Tumor
0.7
145
Tumor
0.7
642
Normal
0.7
231
Tumor
0.6
351
Tumor
0.6
465
Tumor
0.6
422
Normal
0.6
571
Tumor
0.6
425
Tumor
0.5
724
Normal
0.5
463
Tumor
0.5
426
Normal
0.5
411
Tumor
0.5
428
Normal
0.5
424
Normal
0.5
314
Normal
0.5
393
Tumor
0.5
313
Tumor
0.5
755
Tumor
0.4
414
Normal
0.4
331
Tumor
0.4
727
Tumor
0.4
413
Tumor
0.4
332
Normal
0.4
1013
Tumor
0.4
737
Tumor
0.4
171
Tumor
0.4
277
Tumor
0.4
713
Tumor
0.4
353
Tumor
0.4
1027
Tumor
0.4
467
Tumor
0.4
573
Tumor
0.4
1021
Tumor
0.4
695
Tumor
0.3
877
Tumor
0.3
455
Tumor
0.3
132
Normal
0.3
421
Tumor
0.3
616
Normal
0.3
487
Tumor
0.3
533
Tumor
0.3
341
Tumor
0.3
778
Normal
0.3
385
Tumor
0.3
666
Normal
0.3
391
Tumor
0.3
213
Tumor
0.3
557
Tumor
0.3
283
Tumor
0.3
257
Tumor
0.3
647
Tumor
0.3
937
Tumor
0.3
527
Tumor
0.3
884
Normal
0.3
456
Normal
0.2
358
Normal
0.2
662
Normal
0.2
865
Tumor
0.2
427
Tumor
0.2
943
Tumor
0.2
785
Tumor
0.2
912
Normal
0.2
136
Normal
0.2
777
Tumor
0.2
627
Tumor
0.2
464
Normal
0.2
388
Normal
0.2
223
Tumor
0.2
195
Tumor
0.2
384
Normal
0.2
367
Tumor
0.2
951
Tumor
0.2
513
Tumor
0.2
172
Normal
0.2
312
Normal
0.2
394
Normal
0.2
123
Tumor
0.2
138
Normal
0.2
327
Tumor
0.2
214
Normal
0.2
354
Normal
0.2
185
Tumor
0.2
396
Normal
0.2
227
Tumor
0.2
125
Tumor
0.2
278
Normal
0.2
222
Normal
0.2
267
Tumor
0.2
722
Normal
0.2
1042
Normal
0.2
146
Normal
0.1
217
Tumor
0.1
814
Normal
0.1
477
Tumor
0.1
926
Normal
0.1
852
Normal
0.1
525
Tumor
0.1
1016
Normal
0.1
196
Normal
0.1
286
Normal
0.1
862
Normal
0.1
192
Normal
0.1
813
Tumor
0.1
851
Tumor
0.1
186
Normal
0.1
664
Normal
0.1
815
Tumor
0.1
218
Normal
0.1
868
Normal
0.1
298
Normal
0.1
494
Normal
0.1
366
Normal
0.1
361
Tumor
0.1
858
Normal
0.1
162
Normal
0.1
978
Normal
0.1
981
Tumor
0.1
481
Tumor
0.1
672
Normal
0.1
882
Normal
0.1
137
Tumor
0.1
446
Normal
0.1
488
Normal
0.1
482
Normal
0.1
452
Normal
0.1
228
Normal
0.1
923
Tumor
0.1
938
Normal
0.1
916
Normal
0.1
342
Normal
0.1
1022
Normal
0.1
1041
Tumor
0.1
392
Normal
0.0
818
Normal
0.0
983
Tumor
0.0
444
Normal
0.0
982
Normal
0.0
375
Tumor
0.0
148
Normal
0.0
355
Tumor
0.0
745
Tumor
0.0
232
Normal
0.0
648
Normal
0.0
914
Normal
0.0
188
Normal
0.0
534
Normal
0.0
873
Tumor
0.0
262
Normal
0.0
786
Normal
0.0
661
Tumor
0.0
258
Normal
0.0
953
Tumor
0.0
1032
Normal
0.0
416
Normal
0.0
567
Tumor
0.0
268
Normal
0.0
432
Normal
0.0
126
Normal
0.0
386
Normal
0.0
297
Tumor
0.0
466
Normal
0.0
352
Normal
0.0
212
Normal
0.0
363
Tumor
0.0
443
Tumor
0.0
493
Tumor
0.0
545
Tumor
0.0
615
Tumor
0.0
1015
Tumor
0.0
368
Normal
0.0
468
Normal
0.0
161
Tumor
0.0
491
Tumor
0.0
328
Normal
0.0
866
Normal
0.0
635
Tumor
0.0
284
Normal
0.0
1026
Normal
0.0
364
Normal
0.0
221
Tumor
0.0
741
Tumor
0.0
142
Normal
0.0
451
Tumor
0.0
686
Normal
0.0
563
Tumor
0.0
311
Tumor
0.0
492
Normal
0.0
954
Normal
-0.1
497
Tumor
-0.1
824
Normal
-0.1
435
Tumor
-0.1
883
Tumor
-0.1
823
Tumor
-0.1
922
Normal
-0.1
864
Normal
-0.1
261
Tumor
-0.1
546
Normal
-0.1
746
Normal
-0.1
357
Tumor
-0.1
515
Tumor
-0.1
483
Tumor
-0.1
498
Normal
-0.1
918
Normal
-0.1
685
Tumor
-0.1
484
Normal
-0.1
141
Tumor
-0.1
924
Normal
-0.1
365
Tumor
-0.1
696
Normal
-0.1
955
Tumor
-0.1
434
Normal
-0.1
528
Normal
-0.1
716
Normal
-0.1
383
Tumor
-0.1
436
Normal
-0.1
113
Tumor
-0.1
665
Tumor
-0.1
524
Normal
-0.1
135
Tumor
-0.1
867
Tumor
-0.1
861
Tumor
-0.1
272
Normal
-0.1
344
Normal
-0.1
913
Tumor
-0.1
944
Normal
-0.1
124
Normal
-0.1
472
Normal
-0.1
956
Normal
-0.1
431
Tumor
-0.1
874
Normal
-0.1
721
Tumor
-0.1
462
Normal
-0.1
878
Normal
-0.1
271
Tumor
-0.1
1028
Normal
-0.1
538
Normal
-0.2
412
Normal
-0.2
478
Normal
-0.2
574
Normal
-0.2
128
Normal
-0.2
362
Normal
-0.2
224
Normal
-0.2
816
Normal
-0.2
756
Normal
-0.2
663
Tumor
-0.2
714
Normal
-0.2
461
Tumor
-0.2
471
Tumor
-0.2
671
Tumor
-0.2
114
Normal
-0.2
526
Normal
-0.2
514
Normal
-0.2
911
Tumor
-0.2
558
Normal
-0.2
958
Normal
-0.2
857
Tumor
-0.2
433
Tumor
-0.2
968
Normal
-0.2
473
Tumor
-0.2
1031
Tumor
-0.2
553
Tumor
-0.2
572
Normal
-0.2
568
Normal
-0.2
445
Tumor
-0.2
984
Normal
-0.2
723
Tumor
-0.2
728
Normal
-0.2
415
Tumor
-0.2
952
Normal
-0.2
743
Tumor
-0.2
356
Normal
-0.2
127
Tumor
-0.2
111
Normal
-0.3
187
Tumor
-0.3
474
Normal
-0.3
564
Normal
-0.3
191
Tumor
-0.3
964
Normal
-0.3
742
Normal
-0.3
915
Tumor
-0.3
977
Tumor
-0.3
112
Tumor
-0.3
966
Normal
-0.3
976
Normal
-0.3
285
Tumor
-0.3
376
Normal
-0.3
1025
Tumor
-0.3
518
Normal
-0.3
881
Tumor
-0.3
516
Normal
-0.4
921
Tumor
-0.4
967
Tumor
-0.4
738
Normal
-0.4
131
Tumor
-0.4
817
Tumor
-0.4
517
Tumor
-0.4
343
Tumor
-0.4
147
Tumor
-0.4
1014
Normal
-0.4
211
Tumor
-0.4
917
Tumor
-0.4
554
Normal
-0.5
975
Tumor
-0.6
523
Tumor
-0.6
715
Tumor
-0.7
641
Tumor
-0.7
744
Normal
-0.7
963
Tumor
-0.9
1044
Normal
N/A
1043
Tumor
N/A
1046
Normal
N/A
1045
Tumor
N/A
535
Tumor
N/A
536
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
