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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSC22D2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TSC22D2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.5
Number of samples
231
Samples
Sample
Description
TPM
DO23544
0 years, male, NA, stage:2, alive, 960 days
35.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.1
863
Tumor
1.1
665
Tumor
1.0
915
Tumor
0.9
715
Tumor
0.9
112
Tumor
0.8
261
Tumor
0.7
727
Tumor
0.6
451
Tumor
0.6
1041
Tumor
0.6
685
Tumor
0.6
537
Tumor
0.6
125
Tumor
0.5
983
Tumor
0.5
743
Tumor
0.5
471
Tumor
0.5
283
Tumor
0.5
331
Tumor
0.5
861
Tumor
0.5
921
Tumor
0.4
473
Tumor
0.4
957
Tumor
0.4
977
Tumor
0.4
297
Tumor
0.4
231
Tumor
0.4
851
Tumor
0.4
745
Tumor
0.4
535
Tumor
0.4
435
Tumor
0.4
567
Tumor
0.4
497
Tumor
0.4
431
Tumor
0.4
663
Tumor
0.4
444
Normal
0.4
351
Tumor
0.4
445
Tumor
0.4
981
Tumor
0.3
813
Tumor
0.3
741
Tumor
0.3
867
Tumor
0.3
391
Tumor
0.3
463
Tumor
0.3
545
Tumor
0.3
963
Tumor
0.3
672
Normal
0.3
965
Tumor
0.3
477
Tumor
0.3
524
Normal
0.3
313
Tumor
0.3
967
Tumor
0.3
563
Tumor
0.3
1013
Tumor
0.3
478
Normal
0.3
617
Tumor
0.3
641
Tumor
0.2
883
Tumor
0.2
523
Tumor
0.2
661
Tumor
0.2
161
Tumor
0.2
528
Normal
0.2
493
Tumor
0.2
533
Tumor
0.2
918
Normal
0.2
553
Tumor
0.2
536
Normal
0.2
1043
Tumor
0.2
1015
Tumor
0.2
375
Tumor
0.2
937
Tumor
0.2
814
Normal
0.2
491
Tumor
0.2
498
Normal
0.2
367
Tumor
0.2
786
Normal
0.2
943
Tumor
0.2
341
Tumor
0.2
755
Tumor
0.2
271
Tumor
0.2
953
Tumor
0.2
815
Tumor
0.2
517
Tumor
0.2
285
Tumor
0.2
671
Tumor
0.2
386
Normal
0.2
955
Tumor
0.2
525
Tumor
0.2
363
Tumor
0.2
483
Tumor
0.2
648
Normal
0.2
662
Normal
0.2
516
Normal
0.2
557
Tumor
0.1
492
Normal
0.1
487
Tumor
0.1
874
Normal
0.1
737
Tumor
0.1
137
Tumor
0.1
277
Tumor
0.1
951
Tumor
0.1
724
Normal
0.1
1016
Normal
0.1
862
Normal
0.1
538
Normal
0.1
355
Tumor
0.1
1021
Tumor
0.1
211
Tumor
0.1
415
Tumor
0.1
878
Normal
0.1
968
Normal
0.1
434
Normal
0.1
982
Normal
0.1
461
Tumor
0.1
257
Tumor
0.1
866
Normal
0.1
518
Normal
0.1
714
Normal
0.1
546
Normal
0.1
311
Tumor
0.1
978
Normal
0.1
558
Normal
0.1
952
Normal
0.1
312
Normal
0.1
572
Normal
0.1
534
Normal
0.1
664
Normal
0.1
627
Tumor
0.1
554
Normal
0.1
873
Tumor
0.1
515
Tumor
0.1
817
Tumor
0.1
852
Normal
0.1
666
Normal
0.1
984
Normal
0.1
881
Tumor
0.1
756
Normal
0.1
976
Normal
0.1
387
Tumor
0.1
223
Tumor
0.1
696
Normal
0.1
1027
Tumor
0.1
383
Tumor
0.1
723
Tumor
0.1
464
Normal
0.1
635
Tumor
0.1
171
Tumor
0.1
573
Tumor
0.0
975
Tumor
0.0
958
Normal
0.0
1014
Normal
0.0
278
Normal
0.0
877
Tumor
0.0
421
Tumor
0.0
1042
Normal
0.0
396
Normal
0.0
917
Tumor
0.0
123
Tumor
0.0
868
Normal
0.0
385
Tumor
0.0
447
Tumor
0.0
268
Normal
0.0
343
Tumor
0.0
527
Tumor
0.0
864
Normal
0.0
443
Tumor
0.0
298
Normal
0.0
455
Tumor
0.0
113
Tumor
0.0
187
Tumor
0.0
221
Tumor
0.0
514
Normal
0.0
488
Normal
0.0
966
Normal
0.0
412
Normal
0.0
212
Normal
0.0
466
Normal
0.0
446
Normal
0.0
722
Normal
0.0
392
Normal
0.0
954
Normal
0.0
513
Tumor
0.0
413
Tumor
0.0
456
Normal
0.0
395
Tumor
0.0
468
Normal
0.0
785
Tumor
0.0
394
Normal
0.0
816
Normal
0.0
778
Normal
0.0
882
Normal
0.0
964
Normal
0.0
728
Normal
0.0
526
Normal
0.0
384
Normal
0.0
647
Tumor
0.0
924
Normal
0.0
472
Normal
0.0
135
Tumor
0.0
956
Normal
0.0
227
Tumor
0.0
344
Normal
0.0
746
Normal
0.0
185
Tumor
0.0
145
Tumor
0.0
742
Normal
0.0
425
Tumor
0.0
365
Tumor
0.0
1025
Tumor
0.0
452
Normal
0.0
224
Normal
0.0
1045
Tumor
0.0
124
Normal
0.0
217
Tumor
-0.1
944
Normal
-0.1
484
Normal
-0.1
618
Normal
-0.1
912
Normal
-0.1
1026
Normal
-0.1
911
Tumor
-0.1
433
Tumor
-0.1
738
Normal
-0.1
922
Normal
-0.1
188
Normal
-0.1
777
Tumor
-0.1
716
Normal
-0.1
615
Tumor
-0.1
136
Normal
-0.1
824
Normal
-0.1
695
Tumor
-0.1
474
Normal
-0.1
925
Tumor
-0.1
213
Tumor
-0.1
865
Tumor
-0.1
138
Normal
-0.1
228
Normal
-0.1
1028
Normal
-0.1
818
Normal
-0.1
642
Normal
-0.1
857
Tumor
-0.1
424
Normal
-0.1
286
Normal
-0.1
916
Normal
-0.1
436
Normal
-0.1
132
Normal
-0.1
366
Normal
-0.1
721
Tumor
-0.1
481
Tumor
-0.1
352
Normal
-0.1
494
Normal
-0.1
571
Tumor
-0.1
467
Tumor
-0.1
218
Normal
-0.1
114
Normal
-0.1
362
Normal
-0.1
364
Normal
-0.1
416
Normal
-0.1
628
Normal
-0.1
1031
Tumor
-0.1
342
Normal
-0.1
142
Normal
-0.1
884
Normal
-0.1
744
Normal
-0.1
126
Normal
-0.1
388
Normal
-0.1
192
Normal
-0.1
141
Tumor
-0.1
465
Tumor
-0.2
422
Normal
-0.2
574
Normal
-0.2
858
Normal
-0.2
332
Normal
-0.2
938
Normal
-0.2
823
Tumor
-0.2
926
Normal
-0.2
698
Normal
-0.2
314
Normal
-0.2
913
Tumor
-0.2
146
Normal
-0.2
1022
Normal
-0.2
914
Normal
-0.2
686
Normal
-0.2
195
Tumor
-0.2
432
Normal
-0.2
1044
Normal
-0.2
426
Normal
-0.2
423
Tumor
-0.2
616
Normal
-0.2
448
Normal
-0.2
222
Normal
-0.2
411
Tumor
-0.2
368
Normal
-0.2
361
Tumor
-0.2
262
Normal
-0.2
328
Normal
-0.2
357
Tumor
-0.2
232
Normal
-0.2
482
Normal
-0.3
111
Normal
-0.3
568
Normal
-0.3
1032
Normal
-0.3
127
Tumor
-0.3
636
Normal
-0.3
147
Tumor
-0.3
267
Tumor
-0.3
393
Tumor
-0.3
148
Normal
-0.3
272
Normal
-0.3
428
Normal
-0.3
284
Normal
-0.3
427
Tumor
-0.3
354
Normal
-0.3
128
Normal
-0.3
1046
Normal
-0.3
462
Normal
-0.3
356
Normal
-0.3
327
Tumor
-0.3
186
Normal
-0.3
564
Normal
-0.3
172
Normal
-0.3
376
Normal
-0.3
214
Normal
-0.3
358
Normal
-0.3
713
Tumor
-0.3
353
Tumor
-0.4
697
Tumor
-0.4
162
Normal
-0.4
923
Tumor
-0.4
258
Normal
-0.4
414
Normal
-0.4
196
Normal
-0.4
191
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
