We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EVL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
147.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
124.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
116.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
110.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
103.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
88.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
84.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
84.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
83.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
81.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
80.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
73.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
70.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
69.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
67.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
62.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
61.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
60.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
59.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
58.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
58.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
54.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
54.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
53.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
52.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
48.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
47.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
47.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
46.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
46.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
46.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
46.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
45.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
45.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
45.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
45.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
44.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
43.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
43.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
41.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
41.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
41.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
41.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
40.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
39.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
39.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
38.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
38.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
38.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
38.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
37.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
36.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
35.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
35.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
35.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
34.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
34.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
34.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
34.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
34.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
32.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
31.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
30.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
30.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
29.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
29.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
29.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
29.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
28.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
27.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
27.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
26.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
26.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
24.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
24.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
23.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
22.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
20.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
20.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
20.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
19.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
17.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
14.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
14.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EVL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.1
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
143.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
143.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
121.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
104.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
104.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
90.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
76.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
76.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
74.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
73.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
73.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
70.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
70.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
67.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
67.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
66.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
65.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
64.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
64.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
61.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
58.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
57.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
57.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
55.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
55.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
52.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
51.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
50.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
50.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
49.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
48.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
48.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
47.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
47.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
46.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
46.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
45.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
44.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
44.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
43.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
43.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
43.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
43.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
43.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
43.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
41.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
41.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
40.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
40.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
40.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
40.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
39.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
39.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
39.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
38.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
38.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
37.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
36.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
35.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
35.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
35.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
34.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
34.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
34.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
34.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
33.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
33.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
32.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
32.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
32.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
30.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
28.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
26.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
24.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
23.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
23.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.5
724
Normal
1.3
492
Normal
1.2
661
Tumor
1.2
978
Normal
1.1
434
Normal
1.1
536
Normal
1.1
1031
Tumor
1.1
192
Normal
1.0
524
Normal
1.0
467
Tumor
1.0
721
Tumor
1.0
213
Tumor
0.9
535
Tumor
0.9
444
Normal
0.9
188
Normal
0.8
498
Normal
0.8
966
Normal
0.8
716
Normal
0.8
478
Normal
0.8
383
Tumor
0.8
917
Tumor
0.8
126
Normal
0.8
823
Tumor
0.8
861
Tumor
0.8
814
Normal
0.8
455
Tumor
0.8
471
Tumor
0.8
362
Normal
0.7
686
Normal
0.7
943
Tumor
0.7
916
Normal
0.7
224
Normal
0.7
262
Normal
0.7
628
Normal
0.7
857
Tumor
0.7
268
Normal
0.7
384
Normal
0.6
311
Tumor
0.6
558
Normal
0.6
516
Normal
0.6
852
Normal
0.6
146
Normal
0.6
538
Normal
0.6
447
Tumor
0.6
963
Tumor
0.6
1043
Tumor
0.6
195
Tumor
0.6
223
Tumor
0.6
975
Tumor
0.5
141
Tumor
0.5
375
Tumor
0.5
386
Normal
0.5
914
Normal
0.5
1044
Normal
0.5
366
Normal
0.5
468
Normal
0.5
976
Normal
0.5
851
Tumor
0.5
881
Tumor
0.5
493
Tumor
0.5
563
Tumor
0.5
217
Tumor
0.5
312
Normal
0.5
185
Tumor
0.5
1042
Normal
0.5
385
Tumor
0.5
284
Normal
0.5
138
Normal
0.5
272
Normal
0.5
958
Normal
0.5
191
Tumor
0.4
212
Normal
0.4
415
Tumor
0.4
662
Normal
0.4
696
Normal
0.4
1015
Tumor
0.4
365
Tumor
0.4
396
Normal
0.4
984
Normal
0.4
874
Normal
0.4
918
Normal
0.3
142
Normal
0.3
494
Normal
0.3
421
Tumor
0.3
913
Tumor
0.3
514
Normal
0.3
714
Normal
0.3
756
Normal
0.3
461
Tumor
0.3
1028
Normal
0.3
954
Normal
0.3
956
Normal
0.3
187
Tumor
0.3
968
Normal
0.3
432
Normal
0.3
518
Normal
0.3
672
Normal
0.3
728
Normal
0.3
124
Normal
0.3
952
Normal
0.3
528
Normal
0.3
297
Tumor
0.3
925
Tumor
0.3
697
Tumor
0.2
456
Normal
0.2
491
Tumor
0.2
664
Normal
0.2
391
Tumor
0.2
114
Normal
0.2
574
Normal
0.2
778
Normal
0.2
526
Normal
0.2
926
Normal
0.2
817
Tumor
0.2
364
Normal
0.2
343
Tumor
0.2
867
Tumor
0.2
738
Normal
0.2
395
Tumor
0.2
218
Normal
0.2
392
Normal
0.2
573
Tumor
0.2
525
Tumor
0.2
136
Normal
0.2
617
Tumor
0.2
367
Tumor
0.2
816
Normal
0.2
666
Normal
0.2
474
Normal
0.2
858
Normal
0.2
983
Tumor
0.1
786
Normal
0.1
868
Normal
0.1
922
Normal
0.1
352
Normal
0.1
818
Normal
0.1
412
Normal
0.1
1016
Normal
0.1
472
Normal
0.1
387
Tumor
0.1
111
Normal
0.1
864
Normal
0.1
882
Normal
0.1
283
Tumor
0.1
866
Normal
0.1
1032
Normal
0.1
416
Normal
0.1
145
Tumor
0.1
135
Tumor
0.1
884
Normal
0.1
1027
Tumor
0.1
1026
Normal
0.1
937
Tumor
0.1
483
Tumor
0.1
713
Tumor
0.1
1022
Normal
0.1
955
Tumor
0.1
546
Normal
0.0
964
Normal
0.0
451
Tumor
0.0
388
Normal
0.0
258
Normal
0.0
824
Normal
0.0
698
Normal
0.0
488
Normal
0.0
446
Normal
0.0
355
Tumor
0.0
132
Normal
0.0
924
Normal
0.0
214
Normal
0.0
278
Normal
0.0
1014
Normal
0.0
564
Normal
0.0
1046
Normal
0.0
424
Normal
0.0
413
Tumor
0.0
298
Normal
0.0
912
Normal
0.0
727
Tumor
0.0
228
Normal
0.0
557
Tumor
0.0
363
Tumor
0.0
722
Normal
0.0
137
Tumor
-0.1
862
Normal
-0.1
883
Tumor
-0.1
394
Normal
-0.1
723
Tumor
-0.1
938
Normal
-0.1
554
Normal
-0.1
172
Normal
-0.1
332
Normal
-0.1
368
Normal
-0.1
448
Normal
-0.1
462
Normal
-0.1
232
Normal
-0.1
344
Normal
-0.1
466
Normal
-0.1
641
Tumor
-0.1
663
Tumor
-0.1
568
Normal
-0.1
742
Normal
-0.1
464
Normal
-0.1
356
Normal
-0.1
113
Tumor
-0.2
162
Normal
-0.2
161
Tumor
-0.2
354
Normal
-0.2
463
Tumor
-0.2
422
Normal
-0.2
944
Normal
-0.2
648
Normal
-0.2
744
Normal
-0.2
572
Normal
-0.2
482
Normal
-0.2
534
Normal
-0.2
878
Normal
-0.2
484
Normal
-0.2
328
Normal
-0.2
616
Normal
-0.2
953
Tumor
-0.2
286
Normal
-0.2
951
Tumor
-0.2
715
Tumor
-0.2
642
Normal
-0.2
148
Normal
-0.2
865
Tumor
-0.2
523
Tumor
-0.2
414
Normal
-0.2
915
Tumor
-0.2
545
Tumor
-0.2
427
Tumor
-0.3
813
Tumor
-0.3
967
Tumor
-0.3
982
Normal
-0.3
815
Tumor
-0.3
376
Normal
-0.3
785
Tumor
-0.3
1045
Tumor
-0.3
665
Tumor
-0.3
261
Tumor
-0.3
428
Normal
-0.3
221
Tumor
-0.3
452
Normal
-0.3
863
Tumor
-0.3
196
Normal
-0.3
553
Tumor
-0.3
426
Normal
-0.3
497
Tumor
-0.3
277
Tumor
-0.3
755
Tumor
-0.3
923
Tumor
-0.3
433
Tumor
-0.4
746
Normal
-0.4
436
Normal
-0.4
636
Normal
-0.4
353
Tumor
-0.4
737
Tumor
-0.4
431
Tumor
-0.4
271
Tumor
-0.4
571
Tumor
-0.4
921
Tumor
-0.4
671
Tumor
-0.4
443
Tumor
-0.4
222
Normal
-0.4
186
Normal
-0.4
618
Normal
-0.4
685
Tumor
-0.4
515
Tumor
-0.4
1025
Tumor
-0.4
537
Tumor
-0.5
128
Normal
-0.5
327
Tumor
-0.5
423
Tumor
-0.5
341
Tumor
-0.5
285
Tumor
-0.5
527
Tumor
-0.5
314
Normal
-0.5
1041
Tumor
-0.5
877
Tumor
-0.5
231
Tumor
-0.6
331
Tumor
-0.6
977
Tumor
-0.6
358
Normal
-0.6
481
Tumor
-0.6
473
Tumor
-0.6
873
Tumor
-0.6
487
Tumor
-0.7
342
Normal
-0.7
517
Tumor
-0.7
147
Tumor
-0.7
957
Tumor
-0.8
127
Tumor
-0.8
227
Tumor
-0.8
361
Tumor
-0.8
131
Tumor
-0.8
745
Tumor
-0.8
533
Tumor
-0.8
695
Tumor
-0.8
647
Tumor
-0.9
627
Tumor
-0.9
513
Tumor
-0.9
1021
Tumor
-0.9
393
Tumor
-0.9
477
Tumor
-0.9
267
Tumor
-0.9
125
Tumor
-0.9
567
Tumor
-1.0
911
Tumor
-1.0
425
Tumor
-1.0
411
Tumor
-1.1
615
Tumor
-1.1
313
Tumor
-1.1
351
Tumor
-1.1
965
Tumor
-1.1
257
Tumor
-1.1
171
Tumor
-1.2
112
Tumor
-1.2
445
Tumor
-1.2
777
Tumor
-1.2
123
Tumor
-1.2
465
Tumor
-1.3
435
Tumor
-1.4
1013
Tumor
-1.4
981
Tumor
-1.4
741
Tumor
-1.6
635
Tumor
-1.6
357
Tumor
-1.7
743
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
