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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRP7A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
42.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
42.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
21.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
19.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
11.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RRP7A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.9
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
47.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
9.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.4
331
Tumor
1.3
367
Tumor
1.2
685
Tumor
1.2
951
Tumor
1.2
517
Tumor
1.2
537
Tumor
1.1
967
Tumor
1.0
671
Tumor
0.9
351
Tumor
0.9
227
Tumor
0.9
724
Normal
0.9
965
Tumor
0.8
267
Tumor
0.8
427
Tumor
0.8
535
Tumor
0.7
285
Tumor
0.7
483
Tumor
0.7
497
Tumor
0.7
661
Tumor
0.7
413
Tumor
0.7
635
Tumor
0.7
1021
Tumor
0.7
567
Tumor
0.6
171
Tumor
0.6
715
Tumor
0.6
817
Tumor
0.6
112
Tumor
0.6
395
Tumor
0.6
271
Tumor
0.5
123
Tumor
0.5
925
Tumor
0.5
127
Tumor
0.5
363
Tumor
0.5
545
Tumor
0.5
385
Tumor
0.5
923
Tumor
0.5
361
Tumor
0.5
423
Tumor
0.5
557
Tumor
0.5
727
Tumor
0.5
425
Tumor
0.5
493
Tumor
0.4
353
Tumor
0.4
375
Tumor
0.4
357
Tumor
0.4
1031
Tumor
0.4
953
Tumor
0.4
473
Tumor
0.4
187
Tumor
0.4
963
Tumor
0.4
513
Tumor
0.4
1025
Tumor
0.4
721
Tumor
0.4
515
Tumor
0.4
471
Tumor
0.4
113
Tumor
0.4
573
Tumor
0.4
533
Tumor
0.4
383
Tumor
0.4
867
Tumor
0.3
1041
Tumor
0.3
937
Tumor
0.3
877
Tumor
0.3
665
Tumor
0.3
223
Tumor
0.3
376
Normal
0.3
445
Tumor
0.3
391
Tumor
0.3
815
Tumor
0.3
881
Tumor
0.3
737
Tumor
0.3
387
Tumor
0.3
785
Tumor
0.3
343
Tumor
0.3
421
Tumor
0.3
366
Normal
0.3
368
Normal
0.3
957
Tumor
0.3
221
Tumor
0.3
975
Tumor
0.3
943
Tumor
0.3
883
Tumor
0.3
186
Normal
0.3
443
Tumor
0.3
384
Normal
0.3
525
Tumor
0.2
447
Tumor
0.2
641
Tumor
0.2
185
Tumor
0.2
211
Tumor
0.2
131
Tumor
0.2
1016
Normal
0.2
977
Tumor
0.2
553
Tumor
0.2
231
Tumor
0.2
451
Tumor
0.2
433
Tumor
0.2
873
Tumor
0.2
526
Normal
0.2
217
Tumor
0.2
861
Tumor
0.2
865
Tumor
0.2
362
Normal
0.2
917
Tumor
0.2
487
Tumor
0.2
615
Tumor
0.2
111
Normal
0.2
571
Tumor
0.2
455
Tumor
0.2
527
Tumor
0.2
713
Tumor
0.2
741
Tumor
0.2
414
Normal
0.1
523
Tumor
0.1
128
Normal
0.1
477
Tumor
0.1
135
Tumor
0.1
191
Tumor
0.1
913
Tumor
0.1
195
Tumor
0.1
863
Tumor
0.1
162
Normal
0.1
518
Normal
0.1
851
Tumor
0.1
188
Normal
0.1
358
Normal
0.1
921
Tumor
0.1
145
Tumor
0.1
1045
Tumor
0.1
172
Normal
0.1
424
Normal
0.1
431
Tumor
0.1
647
Tumor
0.1
393
Tumor
0.1
481
Tumor
0.1
426
Normal
0.1
365
Tumor
0.1
524
Normal
0.1
388
Normal
0.1
297
Tumor
0.1
695
Tumor
0.1
341
Tumor
0.1
1027
Tumor
0.1
1026
Normal
0.1
137
Tumor
0.1
428
Normal
0.1
814
Normal
0.1
261
Tumor
0.1
534
Normal
0.1
697
Tumor
0.1
958
Normal
0.1
147
Tumor
0.0
422
Normal
0.0
213
Tumor
0.0
352
Normal
0.0
911
Tumor
0.0
141
Tumor
0.0
755
Tumor
0.0
146
Normal
0.0
467
Tumor
0.0
327
Tumor
0.0
114
Normal
0.0
142
Normal
0.0
415
Tumor
0.0
344
Normal
0.0
396
Normal
0.0
663
Tumor
0.0
915
Tumor
0.0
125
Tumor
0.0
716
Normal
0.0
916
Normal
0.0
138
Normal
0.0
536
Normal
0.0
912
Normal
0.0
456
Normal
0.0
435
Tumor
0.0
465
Tumor
0.0
257
Tumor
0.0
745
Tumor
0.0
461
Tumor
0.0
698
Normal
0.0
132
Normal
0.0
262
Normal
0.0
492
Normal
0.0
148
Normal
0.0
354
Normal
0.0
311
Tumor
0.0
857
Tumor
0.0
617
Tumor
-0.1
488
Normal
-0.1
983
Tumor
-0.1
672
Normal
-0.1
283
Tumor
-0.1
161
Tumor
-0.1
313
Tumor
-0.1
966
Normal
-0.1
563
Tumor
-0.1
394
Normal
-0.1
1032
Normal
-0.1
312
Normal
-0.1
272
Normal
-0.1
482
Normal
-0.1
1046
Normal
-0.1
572
Normal
-0.1
452
Normal
-0.1
314
Normal
-0.1
514
Normal
-0.1
823
Tumor
-0.1
666
Normal
-0.1
868
Normal
-0.1
862
Normal
-0.1
392
Normal
-0.1
268
Normal
-0.1
616
Normal
-0.1
448
Normal
-0.1
813
Tumor
-0.1
491
Tumor
-0.1
926
Normal
-0.1
494
Normal
-0.1
444
Normal
-0.1
864
Normal
-0.1
472
Normal
-0.1
212
Normal
-0.1
228
Normal
-0.1
664
Normal
-0.1
386
Normal
-0.1
136
Normal
-0.1
434
Normal
-0.1
463
Tumor
-0.1
874
Normal
-0.1
1042
Normal
-0.1
686
Normal
-0.1
648
Normal
-0.1
436
Normal
-0.1
866
Normal
-0.1
528
Normal
-0.1
484
Normal
-0.1
858
Normal
-0.1
1043
Tumor
-0.1
446
Normal
-0.2
714
Normal
-0.2
124
Normal
-0.2
964
Normal
-0.2
914
Normal
-0.2
954
Normal
-0.2
938
Normal
-0.2
355
Tumor
-0.2
1044
Normal
-0.2
722
Normal
-0.2
546
Normal
-0.2
662
Normal
-0.2
627
Tumor
-0.2
286
Normal
-0.2
777
Tumor
-0.2
564
Normal
-0.2
432
Normal
-0.2
1014
Normal
-0.2
852
Normal
-0.2
416
Normal
-0.2
478
Normal
-0.2
696
Normal
-0.2
824
Normal
-0.2
818
Normal
-0.2
558
Normal
-0.2
328
Normal
-0.2
955
Tumor
-0.2
554
Normal
-0.2
516
Normal
-0.2
574
Normal
-0.2
956
Normal
-0.2
628
Normal
-0.2
224
Normal
-0.2
356
Normal
-0.2
498
Normal
-0.2
284
Normal
-0.2
412
Normal
-0.3
978
Normal
-0.3
466
Normal
-0.3
222
Normal
-0.3
196
Normal
-0.3
218
Normal
-0.3
232
Normal
-0.3
568
Normal
-0.3
462
Normal
-0.3
976
Normal
-0.3
277
Tumor
-0.3
984
Normal
-0.3
968
Normal
-0.3
342
Normal
-0.3
944
Normal
-0.3
728
Normal
-0.3
922
Normal
-0.3
332
Normal
-0.3
1028
Normal
-0.3
636
Normal
-0.3
1015
Tumor
-0.3
192
Normal
-0.3
126
Normal
-0.3
364
Normal
-0.3
884
Normal
-0.3
982
Normal
-0.3
742
Normal
-0.3
474
Normal
-0.4
278
Normal
-0.4
924
Normal
-0.4
952
Normal
-0.4
882
Normal
-0.4
538
Normal
-0.4
1022
Normal
-0.4
642
Normal
-0.4
1013
Tumor
-0.4
464
Normal
-0.4
411
Tumor
-0.4
298
Normal
-0.4
468
Normal
-0.4
918
Normal
-0.4
258
Normal
-0.5
816
Normal
-0.5
214
Normal
-0.5
746
Normal
-0.5
786
Normal
-0.5
723
Tumor
-0.5
618
Normal
-0.5
878
Normal
-0.5
738
Normal
-0.5
744
Normal
-0.6
756
Normal
-0.6
981
Tumor
-0.6
778
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
